Mutagenetix > Incidental Mutation

Incidental Mutation 'R4996:Nefm'

385287

Institutional Source

Beutler Lab

Gene Symbol

Nefm

Ensembl Gene

ENSMUSG00000022054

Gene Name

neurofilament, medium polypeptide

Synonyms

NF-M, Nfm, neurofilament-M, NF160, NF165, Nef3

MMRRC Submission

042590-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.367) question?

Stock #

R4996 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

68356994-68362453 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to C at 68358570 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000106718 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022638] [ENSMUST00000111089]

AlphaFold

no structure available at present

Predicted Effect

unknown
Transcript: ENSMUST00000022638
AA Change: E488G

SMART Domains

Protein: ENSMUSP00000022638
Gene: ENSMUSG00000022054
AA Change: E488G

Domain	Start	End	E-Value	Type
Pfam:Filament_head	9	97	2.6e-18	PFAM
Filament	98	409	1.16e-131	SMART
coiled coil region	460	533	N/A	INTRINSIC
low complexity region	540	604	N/A	INTRINSIC
low complexity region	608	668	N/A	INTRINSIC
low complexity region	703	719	N/A	INTRINSIC
low complexity region	736	754	N/A	INTRINSIC
low complexity region	777	796	N/A	INTRINSIC
low complexity region	816	824	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111089

SMART Domains

Protein: ENSMUSP00000106718
Gene: ENSMUSG00000022054

Domain	Start	End	E-Value	Type
Pfam:Filament_head	9	97	1.6e-16	PFAM
Pfam:Filament	98	403	1.1e-104	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.5%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced axon diameter. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930505A04Rik	C	T	11: 30,376,349 (GRCm39)	V173M	probably damaging	Het
Actl11	A	G	9: 107,808,934 (GRCm39)	I1086V	possibly damaging	Het
Adgrv1	T	C	13: 81,726,853 (GRCm39)	S500G	probably benign	Het
Ahcyl1	A	T	3: 107,575,603 (GRCm39)	V394E	probably damaging	Het
Alg9	T	C	9: 50,720,005 (GRCm39)	F494L	probably damaging	Het
Ankrd55	C	A	13: 112,492,622 (GRCm39)	D264E	possibly damaging	Het
Asb14	A	G	14: 26,634,073 (GRCm39)	N426S	possibly damaging	Het
Atm	A	T	9: 53,435,807 (GRCm39)	F168I	probably benign	Het
Atp13a4	A	T	16: 29,290,822 (GRCm39)	I209N	probably damaging	Het
BB014433	A	T	8: 15,092,166 (GRCm39)	L229Q	probably benign	Het
Calml3	T	C	13: 3,854,142 (GRCm39)	D21G	probably damaging	Het
Capn10	A	G	1: 92,872,858 (GRCm39)	N528S	probably damaging	Het
Ccnl2	T	A	4: 155,897,981 (GRCm39)	D141E	possibly damaging	Het
Cd163	A	G	6: 124,296,106 (GRCm39)	I817V	probably benign	Het
Cgnl1	CTTGCCCAGGTT	CTT	9: 71,632,108 (GRCm39)		probably benign	Het
Cln6	T	A	9: 62,757,937 (GRCm39)	I232N	probably damaging	Het
Col22a1	A	C	15: 71,879,010 (GRCm39)	V49G	probably damaging	Het
Csmd1	A	T	8: 15,960,452 (GRCm39)	M3321K	probably damaging	Het
Cyp2u1	T	A	3: 131,091,933 (GRCm39)	M196L	probably benign	Het
Dlec1	T	G	9: 118,975,118 (GRCm39)	L1566R	probably damaging	Het
Dnajc3	A	G	14: 119,209,839 (GRCm39)	T305A	probably benign	Het
Drp2	G	A	X: 133,342,065 (GRCm39)	R567H	probably damaging	Homo
Efhd1	G	T	1: 87,192,280 (GRCm39)	G37W	possibly damaging	Het
Exph5	G	C	9: 53,286,910 (GRCm39)	E1330D	possibly damaging	Het
Fbln2	A	T	6: 91,242,992 (GRCm39)	Y913F	probably benign	Het
Fmnl1	G	A	11: 103,073,482 (GRCm39)	S167N	possibly damaging	Het
Frs3	A	G	17: 48,012,635 (GRCm39)	E114G	probably damaging	Het
Gmpr2	T	C	14: 55,914,252 (GRCm39)	I169T	probably damaging	Het
Gria2	A	G	3: 80,614,448 (GRCm39)	S531P	probably damaging	Het
Hace1	G	A	10: 45,526,046 (GRCm39)	A296T	probably benign	Het
Ift70a1	C	T	2: 75,810,266 (GRCm39)	G606S	probably benign	Het
Inhbb	A	C	1: 119,348,548 (GRCm39)	L90R	probably damaging	Het
Insr	C	T	8: 3,242,665 (GRCm39)	R18Q	probably null	Het
Kdm6b	G	T	11: 69,296,557 (GRCm39)	P570Q	probably damaging	Het
Lama3	T	C	18: 12,651,800 (GRCm39)	V1803A	probably benign	Het
Lpin3	T	A	2: 160,747,207 (GRCm39)	L811Q	probably damaging	Het
Lrrc8e	C	T	8: 4,285,166 (GRCm39)	L464F	probably damaging	Het
Micall2	A	G	5: 139,696,344 (GRCm39)	S729P	probably benign	Het
Naca	C	T	10: 127,878,298 (GRCm39)		probably benign	Het
Nav1	A	T	1: 135,393,709 (GRCm39)	S1010T	probably damaging	Het
Nlrp9c	A	T	7: 26,085,172 (GRCm39)	F136I	possibly damaging	Het
Nup210	A	T	6: 91,030,418 (GRCm39)	F137Y	probably benign	Het
Or1o3	A	G	17: 37,573,758 (GRCm39)	S266P	probably benign	Het
Or3a1c	A	G	11: 74,046,157 (GRCm39)	H59R	probably damaging	Het
Or8k32	T	C	2: 86,368,615 (GRCm39)	I215V	probably benign	Het
Otog	C	A	7: 45,948,030 (GRCm39)	H2344N	possibly damaging	Het
Otog	C	A	7: 45,954,934 (GRCm39)	C517*	probably null	Het
Pcdhac1	C	T	18: 37,225,580 (GRCm39)	Q798*	probably null	Het
Pdhx	T	C	2: 102,860,657 (GRCm39)	D330G	probably damaging	Het
Peg10	ACATCAGGATCC	ACATCAGGATCCCCATCAGGATCC	6: 4,756,454 (GRCm39)		probably benign	Het
Pgr	C	A	9: 8,900,914 (GRCm39)	P149Q	probably damaging	Het
Plaat1	G	A	16: 29,036,456 (GRCm39)	W31*	probably null	Het
Ppm1h	A	T	10: 122,777,245 (GRCm39)	I504F	probably damaging	Het
Ppp6r3	A	G	19: 3,523,833 (GRCm39)	S556P	probably damaging	Het
Ranbp9	G	A	13: 43,578,570 (GRCm39)	Q168*	probably null	Het
Relb	A	T	7: 19,349,528 (GRCm39)	L259Q	probably benign	Het
Rfx5	G	A	3: 94,863,126 (GRCm39)	V73I	probably benign	Het
Rgcc	T	C	14: 79,527,716 (GRCm39)	D125G	possibly damaging	Het
Rmnd5b	A	G	11: 51,518,735 (GRCm39)	V86A	probably damaging	Het
Slc15a5	G	A	6: 138,020,583 (GRCm39)	T250M	probably damaging	Het
Slc7a2	A	T	8: 41,365,599 (GRCm39)	K477*	probably null	Het
Slx9	A	T	10: 77,351,367 (GRCm39)	W14R	probably null	Het
Smc2	T	A	4: 52,461,042 (GRCm39)		probably null	Het
Sox5	A	T	6: 143,974,070 (GRCm39)	L226*	probably null	Het
Sp140l2	G	T	1: 85,224,815 (GRCm39)	A240E	probably benign	Het
Syne2	A	G	12: 75,990,724 (GRCm39)	E1903G	possibly damaging	Het
Tenm3	A	T	8: 48,688,861 (GRCm39)	I2226N	probably damaging	Het
Tmtc3	A	T	10: 100,283,086 (GRCm39)	I823N	probably damaging	Het
Top6bl	T	A	19: 4,676,112 (GRCm39)	K673N	probably benign	Het
Tor3a	T	C	1: 156,483,342 (GRCm39)	Y360C	probably damaging	Het
Trpc3	T	C	3: 36,716,967 (GRCm39)	E357G	probably benign	Het
Tubgcp6	A	T	15: 88,987,693 (GRCm39)	N1093K	possibly damaging	Het
Vmn1r64	T	A	7: 5,887,052 (GRCm39)	T164S	probably benign	Het
Vmn2r40	T	A	7: 8,911,166 (GRCm39)	Q709L	probably damaging	Het
Vmn2r81	A	T	10: 79,129,247 (GRCm39)	I713L	probably benign	Het
Washc5	T	C	15: 59,205,484 (GRCm39)	T686A	probably benign	Het
Wipf1	GCCTCCTCCTCCTCCTCCTCCTCC	GCCTCCTCCTCCTCCTCCTCC	2: 73,270,418 (GRCm39)		probably benign	Het

Other mutations in Nefm

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02281:Nefm	APN	14	68,361,913 (GRCm39)	missense	probably damaging	1.00
IGL02379:Nefm	APN	14	68,357,688 (GRCm39)	intron	probably benign
IGL02664:Nefm	APN	14	68,357,664 (GRCm39)	intron	probably benign
IGL03115:Nefm	APN	14	68,357,728 (GRCm39)	intron	probably benign
IGL03328:Nefm	APN	14	68,358,739 (GRCm39)	missense	probably benign	0.28
IGL03055:Nefm	UTSW	14	68,360,358 (GRCm39)	missense	probably damaging	0.98
P0025:Nefm	UTSW	14	68,358,414 (GRCm39)	intron	probably benign
R0055:Nefm	UTSW	14	68,358,648 (GRCm39)	intron	probably benign
R0055:Nefm	UTSW	14	68,358,648 (GRCm39)	intron	probably benign
R0111:Nefm	UTSW	14	68,361,991 (GRCm39)	missense	probably benign	0.43
R0240:Nefm	UTSW	14	68,358,583 (GRCm39)	nonsense	probably null
R0240:Nefm	UTSW	14	68,358,583 (GRCm39)	nonsense	probably null
R0480:Nefm	UTSW	14	68,361,608 (GRCm39)	missense	probably damaging	1.00
R0505:Nefm	UTSW	14	68,361,608 (GRCm39)	missense	probably damaging	1.00
R0565:Nefm	UTSW	14	68,362,070 (GRCm39)	missense	probably damaging	1.00
R1454:Nefm	UTSW	14	68,358,828 (GRCm39)	missense	probably damaging	1.00
R1902:Nefm	UTSW	14	68,361,563 (GRCm39)	missense	probably benign	0.02
R2680:Nefm	UTSW	14	68,361,235 (GRCm39)	missense	probably damaging	1.00
R3763:Nefm	UTSW	14	68,361,797 (GRCm39)	missense	probably damaging	1.00
R5426:Nefm	UTSW	14	68,357,515 (GRCm39)	intron	probably benign
R5613:Nefm	UTSW	14	68,358,583 (GRCm39)	nonsense	probably null
R5989:Nefm	UTSW	14	68,361,778 (GRCm39)	missense	probably benign	0.16
R7255:Nefm	UTSW	14	68,353,449 (GRCm39)	missense	probably benign	0.08
R8704:Nefm	UTSW	14	68,358,510 (GRCm39)	missense	unknown
R8775:Nefm	UTSW	14	68,362,108 (GRCm39)	missense	probably damaging	1.00
R8775-TAIL:Nefm	UTSW	14	68,362,108 (GRCm39)	missense	probably damaging	1.00
R9250:Nefm	UTSW	14	68,358,570 (GRCm39)	intron	probably benign
R9720:Nefm	UTSW	14	68,358,793 (GRCm39)	missense	probably benign	0.39

Predicted Primers

PCR Primer
(F):5'- TTGACAGCCACTTCCTCAAC -3'
(R):5'- TTTTCAGGAAGCATCACCGGG -3'

Sequencing Primer
(F):5'- ACTGGAGCCTTCCTTCTCAG -3'
(R):5'- ATCACCGGGCCTCTGTACAC -3'

Posted On

2016-05-10