Incidental Mutation 'R0423:Ppip5k2'
| ID |
38561 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ppip5k2
|
| Ensembl Gene |
ENSMUSG00000040648 |
| Gene Name |
diphosphoinositol pentakisphosphate kinase 2 |
| Synonyms |
Hisppd1, Cfap160, Vip2 |
| MMRRC Submission |
038625-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.231)
|
| Stock # |
R0423 (G1)
|
| Quality Score |
162 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
97633773-97698136 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 97689152 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Proline
at position 38
(S38P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000108466
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000042509]
[ENSMUST00000112845]
[ENSMUST00000171129]
|
| AlphaFold |
Q6ZQB6 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000042509
AA Change: S44P
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000043401
Gene: ENSMUSG00000040648
AA Change: S44P
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
29 |
41 |
N/A |
INTRINSIC |
|
PDB:4NZO|A
|
42 |
366 |
N/A |
PDB |
|
Pfam:His_Phos_2
|
379 |
894 |
2.9e-112 |
PFAM |
|
low complexity region
|
1073 |
1092 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000112845
AA Change: S38P
PolyPhen 2
Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000108466
Gene: ENSMUSG00000040648
AA Change: S38P
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
29 |
41 |
N/A |
INTRINSIC |
|
PDB:4NZO|A
|
42 |
366 |
N/A |
PDB |
|
Pfam:His_Phos_2
|
379 |
894 |
6.9e-141 |
PFAM |
|
low complexity region
|
993 |
1006 |
N/A |
INTRINSIC |
|
low complexity region
|
1192 |
1211 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000171129
AA Change: S38P
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000132889
Gene: ENSMUSG00000040648
AA Change: S38P
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
29 |
41 |
N/A |
INTRINSIC |
|
PDB:4NZO|A
|
42 |
366 |
N/A |
PDB |
|
Pfam:His_Phos_2
|
379 |
894 |
2.9e-112 |
PFAM |
|
low complexity region
|
1073 |
1092 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.0858 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.1%
- 10x: 95.9%
- 20x: 91.9%
|
| Validation Efficiency |
99% (84/85) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the histidine acid phosphatase family of proteins. Despite containing a histidine acid phosphatase domain, the encoded protein functions as an inositol pyrophosphate kinase, and is thought to lack phosphatase activity. This kinase activity is the mechanism by which the encoded protein synthesizes high-energy inositol pyrophosphates, which act as signaling molecules that regulate cellular homeostasis and other processes. This gene may be associated with autism spectrum disorder in human patients. [provided by RefSeq, Sep 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 71 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4930432E11Rik |
A |
T |
7: 29,261,825 (GRCm39) |
|
noncoding transcript |
Het |
| A630001G21Rik |
A |
G |
1: 85,654,187 (GRCm39) |
I50T |
probably benign |
Het |
| Abhd12 |
T |
C |
2: 150,680,312 (GRCm39) |
T264A |
possibly damaging |
Het |
| Acsm3 |
T |
C |
7: 119,376,382 (GRCm39) |
Y370H |
probably damaging |
Het |
| Ank2 |
G |
T |
3: 126,723,509 (GRCm39) |
Y3789* |
probably null |
Het |
| Anxa4 |
C |
T |
6: 86,737,719 (GRCm39) |
A1T |
probably damaging |
Het |
| Apba1 |
T |
A |
19: 23,922,362 (GRCm39) |
V810D |
probably damaging |
Het |
| Bank1 |
A |
G |
3: 135,989,778 (GRCm39) |
I104T |
possibly damaging |
Het |
| Birc6 |
T |
C |
17: 75,003,292 (GRCm39) |
Y4721H |
probably damaging |
Het |
| Bmpr2 |
A |
G |
1: 59,907,669 (GRCm39) |
T921A |
probably benign |
Het |
| Ccdc102a |
A |
C |
8: 95,632,554 (GRCm39) |
|
probably benign |
Het |
| Ccdc141 |
C |
A |
2: 76,869,794 (GRCm39) |
D904Y |
probably damaging |
Het |
| Ccdc96 |
A |
G |
5: 36,642,591 (GRCm39) |
K199R |
probably benign |
Het |
| Cdh10 |
G |
A |
15: 18,986,965 (GRCm39) |
V399I |
probably benign |
Het |
| Cenpk |
A |
G |
13: 104,370,733 (GRCm39) |
T85A |
probably benign |
Het |
| Col6a2 |
A |
C |
10: 76,450,751 (GRCm39) |
V60G |
possibly damaging |
Het |
| Cops7b |
A |
G |
1: 86,526,753 (GRCm39) |
D119G |
probably benign |
Het |
| Cstf2t |
A |
G |
19: 31,061,676 (GRCm39) |
E404G |
possibly damaging |
Het |
| Ctnna2 |
A |
T |
6: 77,630,052 (GRCm39) |
V134E |
probably damaging |
Het |
| Cwh43 |
A |
C |
5: 73,574,085 (GRCm39) |
M250L |
probably benign |
Het |
| Daam2 |
T |
A |
17: 49,776,449 (GRCm39) |
K813* |
probably null |
Het |
| Dhcr24 |
G |
A |
4: 106,443,733 (GRCm39) |
|
probably benign |
Het |
| Dnah8 |
G |
T |
17: 30,920,955 (GRCm39) |
R1182L |
probably benign |
Het |
| Doc2a |
C |
T |
7: 126,447,830 (GRCm39) |
P25S |
probably damaging |
Het |
| Dst |
A |
G |
1: 34,317,116 (GRCm39) |
S6823G |
possibly damaging |
Het |
| Espl1 |
T |
A |
15: 102,212,421 (GRCm39) |
L509* |
probably null |
Het |
| Fbxw19 |
C |
T |
9: 109,315,134 (GRCm39) |
V143I |
probably benign |
Het |
| Fbxw5 |
A |
G |
2: 25,394,538 (GRCm39) |
T171A |
possibly damaging |
Het |
| Gfra2 |
C |
T |
14: 71,133,521 (GRCm39) |
T117M |
probably damaging |
Het |
| Gm454 |
T |
A |
5: 138,202,403 (GRCm39) |
|
noncoding transcript |
Het |
| Ilrun |
A |
C |
17: 28,005,207 (GRCm39) |
Y117D |
probably damaging |
Het |
| Kcnq4 |
A |
G |
4: 120,574,705 (GRCm39) |
S120P |
probably damaging |
Het |
| Krt84 |
A |
T |
15: 101,437,155 (GRCm39) |
L336Q |
probably damaging |
Het |
| Lilra6 |
T |
A |
7: 3,917,774 (GRCm39) |
|
probably benign |
Het |
| Mbnl2 |
G |
A |
14: 120,562,736 (GRCm39) |
R29H |
probably damaging |
Het |
| Mcm3ap |
G |
A |
10: 76,338,539 (GRCm39) |
G1389D |
probably benign |
Het |
| Mettl13 |
A |
T |
1: 162,371,954 (GRCm39) |
I305N |
probably damaging |
Het |
| Muc6 |
A |
G |
7: 141,238,548 (GRCm39) |
S30P |
probably benign |
Het |
| Myh7 |
T |
A |
14: 55,216,646 (GRCm39) |
Q1237L |
probably benign |
Het |
| Myo9a |
T |
G |
9: 59,802,619 (GRCm39) |
D2035E |
probably damaging |
Het |
| Nat10 |
A |
G |
2: 103,578,572 (GRCm39) |
S211P |
probably damaging |
Het |
| Ntm |
T |
C |
9: 29,090,395 (GRCm39) |
Y108C |
probably damaging |
Het |
| Or14c39 |
T |
C |
7: 86,344,434 (GRCm39) |
Y257H |
possibly damaging |
Het |
| Or7g25 |
A |
T |
9: 19,160,248 (GRCm39) |
L149* |
probably null |
Het |
| Pcdhb16 |
A |
G |
18: 37,613,422 (GRCm39) |
D794G |
probably benign |
Het |
| Phlpp1 |
A |
G |
1: 106,267,345 (GRCm39) |
T753A |
probably benign |
Het |
| Pierce1 |
T |
C |
2: 28,356,036 (GRCm39) |
|
probably benign |
Het |
| Pnldc1 |
T |
C |
17: 13,108,963 (GRCm39) |
Q511R |
possibly damaging |
Het |
| Pygb |
A |
G |
2: 150,665,904 (GRCm39) |
K593E |
probably benign |
Het |
| Rangap1 |
A |
T |
15: 81,589,664 (GRCm39) |
F564I |
probably damaging |
Het |
| Rictor |
A |
T |
15: 6,803,381 (GRCm39) |
I498F |
possibly damaging |
Het |
| Rnase12 |
A |
T |
14: 51,294,613 (GRCm39) |
V22D |
probably benign |
Het |
| Rpl7l1 |
T |
A |
17: 47,091,324 (GRCm39) |
M93L |
probably benign |
Het |
| Smg1 |
T |
C |
7: 117,776,103 (GRCm39) |
R1396G |
possibly damaging |
Het |
| Snx19 |
C |
A |
9: 30,347,133 (GRCm39) |
T692N |
probably damaging |
Het |
| Spag6 |
A |
G |
2: 18,715,404 (GRCm39) |
D61G |
probably benign |
Het |
| Spen |
T |
A |
4: 141,206,647 (GRCm39) |
N660I |
unknown |
Het |
| Sptan1 |
T |
G |
2: 29,918,684 (GRCm39) |
C2246G |
probably null |
Het |
| Svopl |
A |
G |
6: 38,013,642 (GRCm39) |
|
probably benign |
Het |
| Taf2 |
A |
T |
15: 54,928,078 (GRCm39) |
N108K |
probably benign |
Het |
| Thbs4 |
T |
C |
13: 92,893,079 (GRCm39) |
D703G |
probably damaging |
Het |
| Tle6 |
G |
T |
10: 81,434,457 (GRCm39) |
N47K |
possibly damaging |
Het |
| Usp48 |
G |
T |
4: 137,343,722 (GRCm39) |
V452L |
probably benign |
Het |
| Ust |
A |
T |
10: 8,173,912 (GRCm39) |
S198T |
probably damaging |
Het |
| Wnk2 |
T |
A |
13: 49,248,894 (GRCm39) |
M386L |
possibly damaging |
Het |
| Ywhaq |
T |
C |
12: 21,441,382 (GRCm39) |
|
probably benign |
Het |
| Zfp11 |
C |
T |
5: 129,735,302 (GRCm39) |
G53E |
possibly damaging |
Het |
| Zfp316 |
A |
G |
5: 143,238,993 (GRCm39) |
S1009P |
probably damaging |
Het |
| Zfp963 |
A |
G |
8: 70,197,156 (GRCm39) |
Y29H |
probably damaging |
Het |
| Zmym4 |
A |
G |
4: 126,776,112 (GRCm39) |
|
probably benign |
Het |
| Zranb3 |
A |
G |
1: 128,019,607 (GRCm39) |
I45T |
probably damaging |
Het |
|
| Other mutations in Ppip5k2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01927:Ppip5k2
|
APN |
1 |
97,640,848 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02266:Ppip5k2
|
APN |
1 |
97,661,697 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
IGL02705:Ppip5k2
|
APN |
1 |
97,686,924 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03229:Ppip5k2
|
APN |
1 |
97,656,686 (GRCm39) |
missense |
probably damaging |
1.00 |
|
P0033:Ppip5k2
|
UTSW |
1 |
97,645,253 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R0082:Ppip5k2
|
UTSW |
1 |
97,687,057 (GRCm39) |
nonsense |
probably null |
|
|
R0242:Ppip5k2
|
UTSW |
1 |
97,668,816 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0242:Ppip5k2
|
UTSW |
1 |
97,668,816 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0267:Ppip5k2
|
UTSW |
1 |
97,656,722 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0281:Ppip5k2
|
UTSW |
1 |
97,644,278 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0373:Ppip5k2
|
UTSW |
1 |
97,668,262 (GRCm39) |
nonsense |
probably null |
|
|
R0402:Ppip5k2
|
UTSW |
1 |
97,647,579 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0613:Ppip5k2
|
UTSW |
1 |
97,680,465 (GRCm39) |
nonsense |
probably null |
|
|
R0751:Ppip5k2
|
UTSW |
1 |
97,677,377 (GRCm39) |
nonsense |
probably null |
|
|
R1121:Ppip5k2
|
UTSW |
1 |
97,684,585 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1265:Ppip5k2
|
UTSW |
1 |
97,647,625 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1436:Ppip5k2
|
UTSW |
1 |
97,639,507 (GRCm39) |
missense |
probably benign |
0.04 |
|
R1543:Ppip5k2
|
UTSW |
1 |
97,668,607 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1739:Ppip5k2
|
UTSW |
1 |
97,656,682 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1845:Ppip5k2
|
UTSW |
1 |
97,651,531 (GRCm39) |
missense |
possibly damaging |
0.74 |
|
R2191:Ppip5k2
|
UTSW |
1 |
97,671,835 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2430:Ppip5k2
|
UTSW |
1 |
97,662,755 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2762:Ppip5k2
|
UTSW |
1 |
97,645,234 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3014:Ppip5k2
|
UTSW |
1 |
97,671,800 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3759:Ppip5k2
|
UTSW |
1 |
97,683,610 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4603:Ppip5k2
|
UTSW |
1 |
97,682,861 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4772:Ppip5k2
|
UTSW |
1 |
97,648,792 (GRCm39) |
unclassified |
probably benign |
|
|
R4951:Ppip5k2
|
UTSW |
1 |
97,639,474 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R5348:Ppip5k2
|
UTSW |
1 |
97,675,317 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R5350:Ppip5k2
|
UTSW |
1 |
97,648,853 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5584:Ppip5k2
|
UTSW |
1 |
97,678,366 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5599:Ppip5k2
|
UTSW |
1 |
97,668,323 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5883:Ppip5k2
|
UTSW |
1 |
97,635,535 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R5898:Ppip5k2
|
UTSW |
1 |
97,671,887 (GRCm39) |
intron |
probably benign |
|
|
R6184:Ppip5k2
|
UTSW |
1 |
97,661,730 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R6221:Ppip5k2
|
UTSW |
1 |
97,657,753 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6775:Ppip5k2
|
UTSW |
1 |
97,647,585 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R7250:Ppip5k2
|
UTSW |
1 |
97,673,187 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7329:Ppip5k2
|
UTSW |
1 |
97,678,478 (GRCm39) |
splice site |
probably null |
|
|
R7357:Ppip5k2
|
UTSW |
1 |
97,686,941 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R7852:Ppip5k2
|
UTSW |
1 |
97,668,896 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7884:Ppip5k2
|
UTSW |
1 |
97,668,207 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8006:Ppip5k2
|
UTSW |
1 |
97,661,831 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8134:Ppip5k2
|
UTSW |
1 |
97,672,888 (GRCm39) |
missense |
probably benign |
0.12 |
|
R8274:Ppip5k2
|
UTSW |
1 |
97,686,941 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R8436:Ppip5k2
|
UTSW |
1 |
97,683,613 (GRCm39) |
missense |
probably benign |
|
|
R8440:Ppip5k2
|
UTSW |
1 |
97,675,276 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8895:Ppip5k2
|
UTSW |
1 |
97,639,544 (GRCm39) |
missense |
probably benign |
|
|
R9017:Ppip5k2
|
UTSW |
1 |
97,655,139 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9061:Ppip5k2
|
UTSW |
1 |
97,645,187 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9441:Ppip5k2
|
UTSW |
1 |
97,672,921 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9533:Ppip5k2
|
UTSW |
1 |
97,661,792 (GRCm39) |
missense |
probably benign |
0.11 |
|
R9715:Ppip5k2
|
UTSW |
1 |
97,677,312 (GRCm39) |
missense |
|
|
|
R9792:Ppip5k2
|
UTSW |
1 |
97,671,822 (GRCm39) |
nonsense |
probably null |
|
|
R9793:Ppip5k2
|
UTSW |
1 |
97,671,822 (GRCm39) |
nonsense |
probably null |
|
|
R9795:Ppip5k2
|
UTSW |
1 |
97,671,822 (GRCm39) |
nonsense |
probably null |
|
|
Z1177:Ppip5k2
|
UTSW |
1 |
97,644,330 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AATAGTCTCTGCCTGAGGGCAAGG -3'
(R):5'- CATGCGATTGGGTGAAAACACTGC -3'
Sequencing Primer
(F):5'- CACATGCAGCCTTTGAGATAGTC -3'
(R):5'- GAGAATGTGCTCTTCTGACACC -3'
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| Posted On |
2013-05-23 |
Incidental Mutation