Mutagenetix > Incidental Mutation

Incidental Mutation 'R4988:Skint10'

385945

Institutional Source

Beutler Lab

Gene Symbol

Skint10

Ensembl Gene

ENSMUSG00000048766

Gene Name

selection and upkeep of intraepithelial T cells 10

Synonyms

A030001H23Rik

MMRRC Submission

042582-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.049) question?

Stock #

R4988 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

112568344-112632063 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 112586069 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 182 (C182*)

Ref Sequence

ENSEMBL: ENSMUSP00000058838 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060327]

AlphaFold

A7TZG1

Predicted Effect

probably null
Transcript: ENSMUST00000060327
AA Change: C182*

SMART Domains

Protein: ENSMUSP00000058838
Gene: ENSMUSG00000048766
AA Change: C182*

Domain	Start	End	E-Value	Type
low complexity region	35	48	N/A	INTRINSIC
PDB:4F8T\|A	50	149	5e-8	PDB
Blast:IG_like	56	143	3e-11	BLAST
transmembrane domain	162	184	N/A	INTRINSIC
transmembrane domain	212	229	N/A	INTRINSIC
transmembrane domain	249	271	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.7%

Validation Efficiency

100% (58/58)

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
AA986860	G	A	1: 130,670,447 (GRCm39)	G223E	probably damaging	Het
Abcb11	T	C	2: 69,154,236 (GRCm39)	N110S	probably benign	Het
Acaca	T	A	11: 84,154,121 (GRCm39)	H947Q	probably damaging	Het
Akap13	T	C	7: 75,380,276 (GRCm39)	M2202T	probably damaging	Het
Amy2b	T	C	3: 113,058,550 (GRCm39)		noncoding transcript	Het
Arhgef4	A	T	1: 34,762,535 (GRCm39)	H597L	unknown	Het
Asgr2	A	G	11: 69,988,665 (GRCm39)	I119M	probably benign	Het
Casc3	T	G	11: 98,712,700 (GRCm39)		probably null	Het
Cbr1b	A	G	16: 93,426,884 (GRCm39)	T162A	probably benign	Het
Ccdc7b	T	A	8: 129,872,013 (GRCm39)	M239K	possibly damaging	Het
Cdc27	A	G	11: 104,416,950 (GRCm39)	S334P	possibly damaging	Het
Ces1c	T	C	8: 93,827,336 (GRCm39)	E476G	probably damaging	Het
Clec3a	T	A	8: 115,144,827 (GRCm39)	M1K	probably null	Het
Col9a1	T	C	1: 24,224,273 (GRCm39)	S152P	unknown	Het
Cpd	A	G	11: 76,705,656 (GRCm39)	S359P	probably damaging	Het
Ctnnal1	A	T	4: 56,847,854 (GRCm39)	L95*	probably null	Het
Dhx57	T	C	17: 80,558,827 (GRCm39)	D1044G	probably damaging	Het
Dync1h1	C	A	12: 110,624,560 (GRCm39)	T3700N	probably damaging	Het
Efcab5	A	G	11: 77,028,078 (GRCm39)	S418P	probably damaging	Het
Elp5	T	C	11: 69,870,668 (GRCm39)	D59G	probably benign	Het
Fam210a	G	A	18: 68,409,218 (GRCm39)	R31C	probably benign	Het
Farp1	A	G	14: 121,513,019 (GRCm39)	T792A	probably damaging	Het
Fmc1	A	T	6: 38,511,917 (GRCm39)	Y37F	probably benign	Het
Gm10717	T	A	9: 3,026,368 (GRCm39)	L72M	probably benign	Het
Gm1758	A	T	16: 14,320,067 (GRCm39)		noncoding transcript	Het
Gm4553	G	A	7: 141,718,729 (GRCm39)		probably benign	Het
Gpr156	A	G	16: 37,768,577 (GRCm39)	T33A	possibly damaging	Het
Hhat	A	T	1: 192,339,602 (GRCm39)		probably benign	Het
Hint2	T	C	4: 43,654,953 (GRCm39)	I59V	possibly damaging	Het
Hps4	C	T	5: 112,526,019 (GRCm39)		probably benign	Het
Hsd17b8	A	G	17: 34,246,262 (GRCm39)	F137S	probably damaging	Het
Klrc2	A	T	6: 129,633,426 (GRCm39)	C192S	probably benign	Het
Map1a	C	T	2: 121,133,531 (GRCm39)	T1211I	probably benign	Het
Mtus1	T	C	8: 41,537,578 (GRCm39)	N46S	probably benign	Het
Myo18a	T	C	11: 77,736,347 (GRCm39)		probably null	Het
Nbas	T	C	12: 13,458,266 (GRCm39)	S1258P	probably benign	Het
Ndst1	C	T	18: 60,836,005 (GRCm39)	G426D	probably damaging	Het
Nepro	A	G	16: 44,554,905 (GRCm39)	E327G	possibly damaging	Het
Nutm2	C	T	13: 50,626,379 (GRCm39)	T322I	possibly damaging	Het
Or10s1	G	A	9: 39,985,961 (GRCm39)	M123I	probably damaging	Het
Or1j18	T	C	2: 36,624,996 (GRCm39)	I221T	possibly damaging	Het
Or2m13	A	T	16: 19,225,860 (GRCm39)	M302K	probably benign	Het
Or6c66	T	C	10: 129,461,930 (GRCm39)		probably null	Het
Pcdhb15	G	A	18: 37,608,855 (GRCm39)	A696T	probably damaging	Het
Polm	C	A	11: 5,787,618 (GRCm39)	R45L	probably damaging	Het
Pon3	G	A	6: 5,254,582 (GRCm39)	R27*	probably null	Het
Proser1	T	C	3: 53,387,046 (GRCm39)	I845T	probably damaging	Het
Rassf8	A	G	6: 145,762,870 (GRCm39)	N406D	possibly damaging	Het
Slc6a19	C	T	13: 73,833,959 (GRCm39)	W366*	probably null	Het
St7	T	C	6: 17,934,225 (GRCm39)	F470L	probably damaging	Het
St8sia4	T	A	1: 95,519,522 (GRCm39)	Y322F	possibly damaging	Het
Trav8n-2	A	T	14: 53,975,814 (GRCm39)		probably benign	Het
Vwa8	A	T	14: 79,435,723 (GRCm39)	H1811L	probably benign	Het
Zfp14	G	A	7: 29,737,482 (GRCm39)	T501I	probably benign	Het

Other mutations in Skint10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02660:Skint10	APN	4	112,622,227 (GRCm39)	unclassified	probably benign
IGL02891:Skint10	APN	4	112,586,023 (GRCm39)	missense	probably benign	0.03
R0067:Skint10	UTSW	4	112,568,753 (GRCm39)	missense	probably benign
R0067:Skint10	UTSW	4	112,568,753 (GRCm39)	missense	probably benign
R0540:Skint10	UTSW	4	112,630,224 (GRCm39)	critical splice donor site	probably null
R0544:Skint10	UTSW	4	112,586,008 (GRCm39)	splice site	probably benign
R0711:Skint10	UTSW	4	112,573,102 (GRCm39)	splice site	probably benign
R1135:Skint10	UTSW	4	112,568,660 (GRCm39)	nonsense	probably null
R1341:Skint10	UTSW	4	112,622,228 (GRCm39)	unclassified	probably benign
R2845:Skint10	UTSW	4	112,573,023 (GRCm39)	missense	probably benign	0.00
R3717:Skint10	UTSW	4	112,603,936 (GRCm39)	missense	probably damaging	1.00
R3718:Skint10	UTSW	4	112,603,936 (GRCm39)	missense	probably damaging	1.00
R4349:Skint10	UTSW	4	112,626,968 (GRCm39)	makesense	probably null
R4857:Skint10	UTSW	4	112,603,830 (GRCm39)	missense	possibly damaging	0.92
R5010:Skint10	UTSW	4	112,584,869 (GRCm39)	missense	probably benign	0.14
R5354:Skint10	UTSW	4	112,568,790 (GRCm39)	missense	possibly damaging	0.57
R5567:Skint10	UTSW	4	112,573,067 (GRCm39)	missense	probably damaging	0.98
R5716:Skint10	UTSW	4	112,568,844 (GRCm39)	missense	probably damaging	0.97
R5827:Skint10	UTSW	4	112,603,972 (GRCm39)	missense	probably benign	0.00
R6705:Skint10	UTSW	4	112,630,301 (GRCm39)	intron	probably benign
R7220:Skint10	UTSW	4	112,586,170 (GRCm39)	missense	probably benign	0.00
R7620:Skint10	UTSW	4	112,573,014 (GRCm39)	missense	possibly damaging	0.78
R7724:Skint10	UTSW	4	112,622,289 (GRCm39)	nonsense	probably null
R7827:Skint10	UTSW	4	112,632,003 (GRCm39)	nonsense	probably null
R8007:Skint10	UTSW	4	112,568,865 (GRCm39)	missense	possibly damaging	0.87
R8056:Skint10	UTSW	4	112,573,010 (GRCm39)	missense	probably benign	0.02
R8816:Skint10	UTSW	4	112,603,892 (GRCm39)	missense	probably benign	0.15
R9419:Skint10	UTSW	4	112,572,981 (GRCm39)	missense	probably damaging	1.00
X0028:Skint10	UTSW	4	112,603,862 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CCATAACCTGAGGTTCTCTGAAC -3'
(R):5'- GGATCGGGGAACTTAGTCTG -3'

Sequencing Primer
(F):5'- CTGAGGTTCTCTGAACATTTTGAGAC -3'
(R):5'- CGGGGAACTTAGTCTGTAATATGAG -3'

Posted On

2016-05-10