Incidental Mutation 'R4988:Clec3a'
ID 385955
Institutional Source Beutler Lab
Gene Symbol Clec3a
Ensembl Gene ENSMUSG00000008874
Gene Name C-type lectin domain family 3, member a
Synonyms 1110019O10Rik, Clecsf1, LOC330844
MMRRC Submission 042582-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.076) question?
Stock # R4988 (G1)
Quality Score 225
Status Validated
Chromosome 8
Chromosomal Location 115144826-115152586 bp(+) (GRCm39)
Type of Mutation start codon destroyed
DNA Base Change (assembly) T to A at 115144827 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Lysine at position 1 (M1K)
Ref Sequence ENSEMBL: ENSMUSP00000009018 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000009018]
AlphaFold Q9EPW4
Predicted Effect probably null
Transcript: ENSMUST00000009018
AA Change: M1K

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000009018
Gene: ENSMUSG00000008874
AA Change: M1K

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
CLECT 68 192 6.72e-26 SMART
Meta Mutation Damage Score 0.9364 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 93.7%
Validation Efficiency 100% (58/58)
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
AA986860 G A 1: 130,670,447 (GRCm39) G223E probably damaging Het
Abcb11 T C 2: 69,154,236 (GRCm39) N110S probably benign Het
Acaca T A 11: 84,154,121 (GRCm39) H947Q probably damaging Het
Akap13 T C 7: 75,380,276 (GRCm39) M2202T probably damaging Het
Amy2b T C 3: 113,058,550 (GRCm39) noncoding transcript Het
Arhgef4 A T 1: 34,762,535 (GRCm39) H597L unknown Het
Asgr2 A G 11: 69,988,665 (GRCm39) I119M probably benign Het
Casc3 T G 11: 98,712,700 (GRCm39) probably null Het
Cbr1b A G 16: 93,426,884 (GRCm39) T162A probably benign Het
Ccdc7b T A 8: 129,872,013 (GRCm39) M239K possibly damaging Het
Cdc27 A G 11: 104,416,950 (GRCm39) S334P possibly damaging Het
Ces1c T C 8: 93,827,336 (GRCm39) E476G probably damaging Het
Col9a1 T C 1: 24,224,273 (GRCm39) S152P unknown Het
Cpd A G 11: 76,705,656 (GRCm39) S359P probably damaging Het
Ctnnal1 A T 4: 56,847,854 (GRCm39) L95* probably null Het
Dhx57 T C 17: 80,558,827 (GRCm39) D1044G probably damaging Het
Dync1h1 C A 12: 110,624,560 (GRCm39) T3700N probably damaging Het
Efcab5 A G 11: 77,028,078 (GRCm39) S418P probably damaging Het
Elp5 T C 11: 69,870,668 (GRCm39) D59G probably benign Het
Fam210a G A 18: 68,409,218 (GRCm39) R31C probably benign Het
Farp1 A G 14: 121,513,019 (GRCm39) T792A probably damaging Het
Fmc1 A T 6: 38,511,917 (GRCm39) Y37F probably benign Het
Gm10717 T A 9: 3,026,368 (GRCm39) L72M probably benign Het
Gm1758 A T 16: 14,320,067 (GRCm39) noncoding transcript Het
Gm4553 G A 7: 141,718,729 (GRCm39) probably benign Het
Gpr156 A G 16: 37,768,577 (GRCm39) T33A possibly damaging Het
Hhat A T 1: 192,339,602 (GRCm39) probably benign Het
Hint2 T C 4: 43,654,953 (GRCm39) I59V possibly damaging Het
Hps4 C T 5: 112,526,019 (GRCm39) probably benign Het
Hsd17b8 A G 17: 34,246,262 (GRCm39) F137S probably damaging Het
Klrc2 A T 6: 129,633,426 (GRCm39) C192S probably benign Het
Map1a C T 2: 121,133,531 (GRCm39) T1211I probably benign Het
Mtus1 T C 8: 41,537,578 (GRCm39) N46S probably benign Het
Myo18a T C 11: 77,736,347 (GRCm39) probably null Het
Nbas T C 12: 13,458,266 (GRCm39) S1258P probably benign Het
Ndst1 C T 18: 60,836,005 (GRCm39) G426D probably damaging Het
Nepro A G 16: 44,554,905 (GRCm39) E327G possibly damaging Het
Nutm2 C T 13: 50,626,379 (GRCm39) T322I possibly damaging Het
Or10s1 G A 9: 39,985,961 (GRCm39) M123I probably damaging Het
Or1j18 T C 2: 36,624,996 (GRCm39) I221T possibly damaging Het
Or2m13 A T 16: 19,225,860 (GRCm39) M302K probably benign Het
Or6c66 T C 10: 129,461,930 (GRCm39) probably null Het
Pcdhb15 G A 18: 37,608,855 (GRCm39) A696T probably damaging Het
Polm C A 11: 5,787,618 (GRCm39) R45L probably damaging Het
Pon3 G A 6: 5,254,582 (GRCm39) R27* probably null Het
Proser1 T C 3: 53,387,046 (GRCm39) I845T probably damaging Het
Rassf8 A G 6: 145,762,870 (GRCm39) N406D possibly damaging Het
Skint10 A T 4: 112,586,069 (GRCm39) C182* probably null Het
Slc6a19 C T 13: 73,833,959 (GRCm39) W366* probably null Het
St7 T C 6: 17,934,225 (GRCm39) F470L probably damaging Het
St8sia4 T A 1: 95,519,522 (GRCm39) Y322F possibly damaging Het
Trav8n-2 A T 14: 53,975,814 (GRCm39) probably benign Het
Vwa8 A T 14: 79,435,723 (GRCm39) H1811L probably benign Het
Zfp14 G A 7: 29,737,482 (GRCm39) T501I probably benign Het
Other mutations in Clec3a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01564:Clec3a APN 8 115,152,282 (GRCm39) missense probably damaging 1.00
IGL02391:Clec3a APN 8 115,152,240 (GRCm39) missense probably benign 0.30
R0569:Clec3a UTSW 8 115,152,476 (GRCm39) missense probably damaging 1.00
R5344:Clec3a UTSW 8 115,149,712 (GRCm39) missense probably damaging 1.00
R5443:Clec3a UTSW 8 115,144,893 (GRCm39) missense probably benign 0.10
R6023:Clec3a UTSW 8 115,144,883 (GRCm39) missense possibly damaging 0.52
R6523:Clec3a UTSW 8 115,152,345 (GRCm39) missense probably damaging 1.00
R8263:Clec3a UTSW 8 115,152,369 (GRCm39) missense probably benign 0.00
R8320:Clec3a UTSW 8 115,152,369 (GRCm39) missense probably benign 0.00
R9068:Clec3a UTSW 8 115,152,375 (GRCm39) missense probably damaging 1.00
R9623:Clec3a UTSW 8 115,144,887 (GRCm39) missense probably benign
Z1187:Clec3a UTSW 8 115,144,859 (GRCm39) missense possibly damaging 0.91
Z1188:Clec3a UTSW 8 115,144,859 (GRCm39) missense possibly damaging 0.91
Z1190:Clec3a UTSW 8 115,144,859 (GRCm39) missense possibly damaging 0.91
Predicted Primers PCR Primer
(F):5'- CCATGGCTGGAGGAACATTC -3'
(R):5'- CCACTATGATAGGATGGTCCCC -3'

Sequencing Primer
(F):5'- GGAACATTCCGGCCTTCC -3'
(R):5'- GATGTGAGCCTTGTCCCAACAC -3'
Posted On 2016-05-10