Mutagenetix > Incidental Mutation

Incidental Mutation 'R0423:Tle6'

38596

Institutional Source

Beutler Lab

Gene Symbol

Tle6

Ensembl Gene

ENSMUSG00000034758

Gene Name

transducin-like enhancer of split 6

Synonyms

1810057E06Rik, Grg6

MMRRC Submission

038625-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.190) question?

Stock #

R0423 (G1)

Quality Score

Status

Not validated

Chromosome

Chromosomal Location

81426738-81436907 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 81434457 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 47 (N47K)

Ref Sequence

ENSEMBL: ENSMUSP00000114738 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072020] [ENSMUST00000127546] [ENSMUST00000142948] [ENSMUST00000151858]

AlphaFold

Q9WVB3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000072020
AA Change: N47K

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000071905
Gene: ENSMUSG00000034758
AA Change: N47K

Domain	Start	End	E-Value	Type
WD40	283	320	9.6e-2	SMART
Blast:WD40	334	372	2e-12	BLAST
WD40	377	415	6.16e0	SMART
WD40	418	455	7.43e-1	SMART
Blast:WD40	460	496	4e-13	BLAST
WD40	499	538	1.43e0	SMART
WD40	541	578	2.97e0	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124724

Predicted Effect

possibly damaging
Transcript: ENSMUST00000127546
AA Change: N47K

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128278

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131530

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134457

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135008

Predicted Effect

possibly damaging
Transcript: ENSMUST00000142948
AA Change: N47K

PolyPhen 2 Score 0.574 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000117287
Gene: ENSMUSG00000034758
AA Change: N47K

Domain	Start	End	E-Value	Type
WD40	273	310	9.6e-2	SMART
Blast:WD40	324	362	2e-12	BLAST
WD40	367	405	6.16e0	SMART
WD40	408	445	7.43e-1	SMART
Blast:WD40	450	486	4e-13	BLAST
WD40	489	528	1.43e0	SMART
WD40	531	568	2.97e0	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000151858
AA Change: N47K

PolyPhen 2 Score 0.816 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000119945
Gene: ENSMUSG00000034758
AA Change: N47K

Domain	Start	End	E-Value	Type
low complexity region	69	77	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153379

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149721

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137631

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.9%
20x: 91.9%

Validation Efficiency

99% (84/85)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Groucho/ transducin-like Enhancer of split family of transcriptional co-repressors. The encoded protein is a component of the mammalian subcortical maternal complex, which is required for preimplantation development. In mouse, knock out of this gene results in cleavage-stage embryonic arrest resulting from defective cytoplasmic F-actin meshwork formation and asymmetric cell division. In human, an allelic variant in this gene is associated with preimplantation embryonic lethality. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930432E11Rik	A	T	7: 29,261,825 (GRCm39)		noncoding transcript	Het
A630001G21Rik	A	G	1: 85,654,187 (GRCm39)	I50T	probably benign	Het
Abhd12	T	C	2: 150,680,312 (GRCm39)	T264A	possibly damaging	Het
Acsm3	T	C	7: 119,376,382 (GRCm39)	Y370H	probably damaging	Het
Ank2	G	T	3: 126,723,509 (GRCm39)	Y3789*	probably null	Het
Anxa4	C	T	6: 86,737,719 (GRCm39)	A1T	probably damaging	Het
Apba1	T	A	19: 23,922,362 (GRCm39)	V810D	probably damaging	Het
Bank1	A	G	3: 135,989,778 (GRCm39)	I104T	possibly damaging	Het
Birc6	T	C	17: 75,003,292 (GRCm39)	Y4721H	probably damaging	Het
Bmpr2	A	G	1: 59,907,669 (GRCm39)	T921A	probably benign	Het
Ccdc102a	A	C	8: 95,632,554 (GRCm39)		probably benign	Het
Ccdc141	C	A	2: 76,869,794 (GRCm39)	D904Y	probably damaging	Het
Ccdc96	A	G	5: 36,642,591 (GRCm39)	K199R	probably benign	Het
Cdh10	G	A	15: 18,986,965 (GRCm39)	V399I	probably benign	Het
Cenpk	A	G	13: 104,370,733 (GRCm39)	T85A	probably benign	Het
Col6a2	A	C	10: 76,450,751 (GRCm39)	V60G	possibly damaging	Het
Cops7b	A	G	1: 86,526,753 (GRCm39)	D119G	probably benign	Het
Cstf2t	A	G	19: 31,061,676 (GRCm39)	E404G	possibly damaging	Het
Ctnna2	A	T	6: 77,630,052 (GRCm39)	V134E	probably damaging	Het
Cwh43	A	C	5: 73,574,085 (GRCm39)	M250L	probably benign	Het
Daam2	T	A	17: 49,776,449 (GRCm39)	K813*	probably null	Het
Dhcr24	G	A	4: 106,443,733 (GRCm39)		probably benign	Het
Dnah8	G	T	17: 30,920,955 (GRCm39)	R1182L	probably benign	Het
Doc2a	C	T	7: 126,447,830 (GRCm39)	P25S	probably damaging	Het
Dst	A	G	1: 34,317,116 (GRCm39)	S6823G	possibly damaging	Het
Espl1	T	A	15: 102,212,421 (GRCm39)	L509*	probably null	Het
Fbxw19	C	T	9: 109,315,134 (GRCm39)	V143I	probably benign	Het
Fbxw5	A	G	2: 25,394,538 (GRCm39)	T171A	possibly damaging	Het
Gfra2	C	T	14: 71,133,521 (GRCm39)	T117M	probably damaging	Het
Gm454	T	A	5: 138,202,403 (GRCm39)		noncoding transcript	Het
Ilrun	A	C	17: 28,005,207 (GRCm39)	Y117D	probably damaging	Het
Kcnq4	A	G	4: 120,574,705 (GRCm39)	S120P	probably damaging	Het
Krt84	A	T	15: 101,437,155 (GRCm39)	L336Q	probably damaging	Het
Lilra6	T	A	7: 3,917,774 (GRCm39)		probably benign	Het
Mbnl2	G	A	14: 120,562,736 (GRCm39)	R29H	probably damaging	Het
Mcm3ap	G	A	10: 76,338,539 (GRCm39)	G1389D	probably benign	Het
Mettl13	A	T	1: 162,371,954 (GRCm39)	I305N	probably damaging	Het
Muc6	A	G	7: 141,238,548 (GRCm39)	S30P	probably benign	Het
Myh7	T	A	14: 55,216,646 (GRCm39)	Q1237L	probably benign	Het
Myo9a	T	G	9: 59,802,619 (GRCm39)	D2035E	probably damaging	Het
Nat10	A	G	2: 103,578,572 (GRCm39)	S211P	probably damaging	Het
Ntm	T	C	9: 29,090,395 (GRCm39)	Y108C	probably damaging	Het
Or14c39	T	C	7: 86,344,434 (GRCm39)	Y257H	possibly damaging	Het
Or7g25	A	T	9: 19,160,248 (GRCm39)	L149*	probably null	Het
Pcdhb16	A	G	18: 37,613,422 (GRCm39)	D794G	probably benign	Het
Phlpp1	A	G	1: 106,267,345 (GRCm39)	T753A	probably benign	Het
Pierce1	T	C	2: 28,356,036 (GRCm39)		probably benign	Het
Pnldc1	T	C	17: 13,108,963 (GRCm39)	Q511R	possibly damaging	Het
Ppip5k2	A	G	1: 97,689,152 (GRCm39)	S38P	possibly damaging	Het
Pygb	A	G	2: 150,665,904 (GRCm39)	K593E	probably benign	Het
Rangap1	A	T	15: 81,589,664 (GRCm39)	F564I	probably damaging	Het
Rictor	A	T	15: 6,803,381 (GRCm39)	I498F	possibly damaging	Het
Rnase12	A	T	14: 51,294,613 (GRCm39)	V22D	probably benign	Het
Rpl7l1	T	A	17: 47,091,324 (GRCm39)	M93L	probably benign	Het
Smg1	T	C	7: 117,776,103 (GRCm39)	R1396G	possibly damaging	Het
Snx19	C	A	9: 30,347,133 (GRCm39)	T692N	probably damaging	Het
Spag6	A	G	2: 18,715,404 (GRCm39)	D61G	probably benign	Het
Spen	T	A	4: 141,206,647 (GRCm39)	N660I	unknown	Het
Sptan1	T	G	2: 29,918,684 (GRCm39)	C2246G	probably null	Het
Svopl	A	G	6: 38,013,642 (GRCm39)		probably benign	Het
Taf2	A	T	15: 54,928,078 (GRCm39)	N108K	probably benign	Het
Thbs4	T	C	13: 92,893,079 (GRCm39)	D703G	probably damaging	Het
Usp48	G	T	4: 137,343,722 (GRCm39)	V452L	probably benign	Het
Ust	A	T	10: 8,173,912 (GRCm39)	S198T	probably damaging	Het
Wnk2	T	A	13: 49,248,894 (GRCm39)	M386L	possibly damaging	Het
Ywhaq	T	C	12: 21,441,382 (GRCm39)		probably benign	Het
Zfp11	C	T	5: 129,735,302 (GRCm39)	G53E	possibly damaging	Het
Zfp316	A	G	5: 143,238,993 (GRCm39)	S1009P	probably damaging	Het
Zfp963	A	G	8: 70,197,156 (GRCm39)	Y29H	probably damaging	Het
Zmym4	A	G	4: 126,776,112 (GRCm39)		probably benign	Het
Zranb3	A	G	1: 128,019,607 (GRCm39)	I45T	probably damaging	Het

Other mutations in Tle6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00966:Tle6	APN	10	81,430,292 (GRCm39)	missense	probably damaging	1.00
IGL02151:Tle6	APN	10	81,434,474 (GRCm39)	missense	probably benign	0.01
IGL02724:Tle6	APN	10	81,435,898 (GRCm39)	nonsense	probably null
R0420:Tle6	UTSW	10	81,431,145 (GRCm39)	unclassified	probably benign
R0589:Tle6	UTSW	10	81,431,253 (GRCm39)	unclassified	probably benign
R0605:Tle6	UTSW	10	81,430,180 (GRCm39)	missense	probably damaging	0.99
R1554:Tle6	UTSW	10	81,431,219 (GRCm39)	missense	probably benign	0.05
R1860:Tle6	UTSW	10	81,430,163 (GRCm39)	missense	probably damaging	1.00
R1863:Tle6	UTSW	10	81,427,755 (GRCm39)	missense	possibly damaging	0.91
R1952:Tle6	UTSW	10	81,431,319 (GRCm39)	missense	possibly damaging	0.82
R2139:Tle6	UTSW	10	81,429,868 (GRCm39)	missense	probably damaging	0.99
R2337:Tle6	UTSW	10	81,428,490 (GRCm39)	splice site	probably null
R2849:Tle6	UTSW	10	81,430,235 (GRCm39)	missense	probably damaging	1.00
R3158:Tle6	UTSW	10	81,431,038 (GRCm39)	splice site	probably null
R3777:Tle6	UTSW	10	81,431,987 (GRCm39)	missense	probably benign	0.23
R3778:Tle6	UTSW	10	81,431,987 (GRCm39)	missense	probably benign	0.23
R4085:Tle6	UTSW	10	81,430,349 (GRCm39)	splice site	probably null
R5058:Tle6	UTSW	10	81,431,791 (GRCm39)	missense	probably damaging	1.00
R5058:Tle6	UTSW	10	81,430,072 (GRCm39)	missense	possibly damaging	0.93
R5183:Tle6	UTSW	10	81,428,635 (GRCm39)	missense	probably damaging	0.97
R6225:Tle6	UTSW	10	81,428,600 (GRCm39)	missense	probably damaging	1.00
R6331:Tle6	UTSW	10	81,431,073 (GRCm39)	missense	probably benign	0.00
R6514:Tle6	UTSW	10	81,427,810 (GRCm39)	missense	probably damaging	1.00
R6515:Tle6	UTSW	10	81,427,810 (GRCm39)	missense	probably damaging	1.00
R6517:Tle6	UTSW	10	81,427,810 (GRCm39)	missense	probably damaging	1.00
R7145:Tle6	UTSW	10	81,435,910 (GRCm39)	missense	possibly damaging	0.66
R8070:Tle6	UTSW	10	81,434,476 (GRCm39)	missense	possibly damaging	0.79
R8085:Tle6	UTSW	10	81,431,792 (GRCm39)	missense	probably damaging	1.00
R8194:Tle6	UTSW	10	81,426,888 (GRCm39)	missense	probably damaging	0.98
R9066:Tle6	UTSW	10	81,430,212 (GRCm39)	missense	possibly damaging	0.69
R9421:Tle6	UTSW	10	81,429,868 (GRCm39)	missense
R9433:Tle6	UTSW	10	81,426,880 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGTCTCAACAAGGAGTGACCCTG -3'
(R):5'- GGCAAGTTCTAAGCCACCAAACCTG -3'

Sequencing Primer
(F):5'- acaagagtcccaacatagcc -3'
(R):5'- AACCTGTCTTCAAACGATTGCTG -3'

Posted On

2013-05-23