Mutagenetix > Incidental Mutation

Incidental Mutation 'R5063:Letm2'

386753

Institutional Source

Beutler Lab

Gene Symbol

Letm2

Ensembl Gene

ENSMUSG00000037363

Gene Name

leucine zipper-EF-hand containing transmembrane protein 2

Synonyms

D030041N04Rik

MMRRC Submission

042653-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.103) question?

Stock #

R5063 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

26068506-26087598 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 26071795 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 369 (D369G)

Ref Sequence

ENSEMBL: ENSMUSP00000078160 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079160]

AlphaFold

Q7TNU7

Predicted Effect

probably benign
Transcript: ENSMUST00000079160
AA Change: D369G

PolyPhen 2 Score 0.258 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000078160
Gene: ENSMUSG00000037363
AA Change: D369G

Domain	Start	End	E-Value	Type
low complexity region	106	117	N/A	INTRINSIC
Pfam:LETM1	120	384	1.2e-102	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209539

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210221

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210321

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211001

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211133

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	T	C	11: 119,901,315 (GRCm39)	H970R	probably benign	Het
Anapc1	T	C	2: 128,471,469 (GRCm39)	M1496V	possibly damaging	Het
Arhgef4	A	T	1: 34,763,296 (GRCm39)	T851S	probably benign	Het
Armh3	A	G	19: 45,874,394 (GRCm39)	I593T	possibly damaging	Het
Cacna1d	A	G	14: 29,773,340 (GRCm39)	S1782P	probably benign	Het
Capn13	T	A	17: 73,629,074 (GRCm39)	R578*	probably null	Het
Casp8	A	T	1: 58,883,533 (GRCm39)	H280L	probably damaging	Het
Cd274	G	T	19: 29,361,543 (GRCm39)	D284Y	probably damaging	Het
Cenpe	T	A	3: 134,976,715 (GRCm39)	C2441S	probably damaging	Het
Chn2	A	T	6: 54,267,272 (GRCm39)	K118*	probably null	Het
Chst12	G	T	5: 140,510,167 (GRCm39)	E265*	probably null	Het
Cp	C	A	3: 20,043,379 (GRCm39)	Q22K	probably benign	Het
Diaph3	A	T	14: 87,222,306 (GRCm39)	W404R	probably damaging	Het
Dnajb13	T	G	7: 100,160,030 (GRCm39)	E69A	probably damaging	Het
Dzip1l	A	G	9: 99,549,705 (GRCm39)	E725G	probably damaging	Het
Dzip3	T	A	16: 48,774,117 (GRCm39)	K373*	probably null	Het
Fmn1	C	T	2: 113,195,266 (GRCm39)	T322I	unknown	Het
Gbp9	T	C	5: 105,233,028 (GRCm39)	Y208C	probably benign	Het
Gtf2i	T	A	5: 134,289,425 (GRCm39)	K418N	probably damaging	Het
Herc3	C	T	6: 58,832,745 (GRCm39)	Q137*	probably null	Het
Igkv4-80	A	C	6: 68,993,649 (GRCm39)	S81A	probably benign	Het
Iqcm	A	T	8: 76,472,914 (GRCm39)	D251V	probably damaging	Het
Itpr3	A	T	17: 27,308,885 (GRCm39)	I363F	possibly damaging	Het
Khnyn	A	T	14: 56,124,660 (GRCm39)	K305*	probably null	Het
Klf17	A	G	4: 117,617,856 (GRCm39)	V167A	possibly damaging	Het
Lrrc31	A	G	3: 30,744,085 (GRCm39)	V141A	possibly damaging	Het
Msh5	A	T	17: 35,261,164 (GRCm39)		probably null	Het
Neb	G	A	2: 52,113,224 (GRCm39)		probably benign	Het
Or10j5	T	A	1: 172,785,009 (GRCm39)	S216T	possibly damaging	Het
Or2t6	A	T	14: 14,175,593 (GRCm38)	M163K	probably damaging	Het
Otx1	C	A	11: 21,947,037 (GRCm39)	A91S	probably damaging	Het
Padi6	T	C	4: 140,469,191 (GRCm39)	I50V	probably benign	Het
Pcdhb22	G	T	18: 37,652,179 (GRCm39)	G216C	probably damaging	Het
Ppy	A	G	11: 101,991,525 (GRCm39)	Y5H	probably benign	Het
Psmc1	T	C	12: 100,081,734 (GRCm39)	L112S	probably damaging	Het
Ptov1	A	G	7: 44,515,026 (GRCm39)	I195T	possibly damaging	Het
Rassf10	C	A	7: 112,553,631 (GRCm39)	D77E	probably benign	Het
Slc25a45	T	C	19: 5,934,490 (GRCm39)	S153P	possibly damaging	Het
Slco1a5	G	A	6: 142,204,791 (GRCm39)	R126C	probably damaging	Het
Srebf2	T	C	15: 82,061,652 (GRCm39)	V366A	probably benign	Het
St6galnac5	T	C	3: 152,686,772 (GRCm39)	S61G	probably benign	Het
Sult6b1	A	T	17: 79,213,005 (GRCm39)	V82D	probably benign	Het
Tep1	A	T	14: 51,088,084 (GRCm39)	C818S	possibly damaging	Het
Tex15	T	G	8: 34,072,638 (GRCm39)	F2728L	possibly damaging	Het
Tm9sf2	T	A	14: 122,382,558 (GRCm39)	F190Y	probably damaging	Het
Tmem175	T	C	5: 108,794,298 (GRCm39)	L476P	probably damaging	Het
Tmprss11c	T	C	5: 86,385,689 (GRCm39)	K248R	probably benign	Het
Tnk2	T	A	16: 32,489,668 (GRCm39)	F316I	probably damaging	Het
Vmn2r75	T	A	7: 85,813,372 (GRCm39)	M477L	probably benign	Het
Vmn2r83	A	C	10: 79,314,921 (GRCm39)	I390L	probably benign	Het
Vmn2r88	A	G	14: 51,648,603 (GRCm39)	Y49C	probably damaging	Het
Zdhhc4	T	A	5: 143,302,377 (GRCm39)	I318F	probably damaging	Het
Zmat4	A	T	8: 24,238,457 (GRCm39)	D27V	probably damaging	Het

Other mutations in Letm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02738:Letm2	APN	8	26,076,789 (GRCm39)	missense	probably damaging	1.00
selbstlob	UTSW	8	26,083,977 (GRCm39)	missense	probably benign	0.03
IGL03098:Letm2	UTSW	8	26,071,745 (GRCm39)	missense	possibly damaging	0.73
R0062:Letm2	UTSW	8	26,077,464 (GRCm39)	splice site	probably benign
R0062:Letm2	UTSW	8	26,077,464 (GRCm39)	splice site	probably benign
R0207:Letm2	UTSW	8	26,068,786 (GRCm39)	missense	probably damaging	0.96
R0485:Letm2	UTSW	8	26,082,574 (GRCm39)	missense	probably damaging	1.00
R1869:Letm2	UTSW	8	26,071,729 (GRCm39)	missense	probably damaging	0.98
R1870:Letm2	UTSW	8	26,086,460 (GRCm39)	splice site	probably benign
R1871:Letm2	UTSW	8	26,086,460 (GRCm39)	splice site	probably benign
R3881:Letm2	UTSW	8	26,083,884 (GRCm39)	nonsense	probably null
R4115:Letm2	UTSW	8	26,070,343 (GRCm39)	nonsense	probably null
R4459:Letm2	UTSW	8	26,076,715 (GRCm39)	missense	probably damaging	1.00
R4461:Letm2	UTSW	8	26,076,715 (GRCm39)	missense	probably damaging	1.00
R4961:Letm2	UTSW	8	26,084,108 (GRCm39)	missense	possibly damaging	0.86
R5069:Letm2	UTSW	8	26,083,980 (GRCm39)	nonsense	probably null
R5732:Letm2	UTSW	8	26,077,341 (GRCm39)	missense	possibly damaging	0.51
R6527:Letm2	UTSW	8	26,082,522 (GRCm39)	utr 3 prime	probably benign
R6706:Letm2	UTSW	8	26,083,977 (GRCm39)	missense	probably benign	0.03
R7624:Letm2	UTSW	8	26,082,553 (GRCm39)	nonsense	probably null
R7968:Letm2	UTSW	8	26,083,766 (GRCm39)	missense	probably damaging	1.00
R8272:Letm2	UTSW	8	26,076,672 (GRCm39)	missense	probably damaging	1.00
R8356:Letm2	UTSW	8	26,071,729 (GRCm39)	missense	probably damaging	0.98
R8456:Letm2	UTSW	8	26,071,729 (GRCm39)	missense	probably damaging	0.98
R8481:Letm2	UTSW	8	26,070,375 (GRCm39)	missense	possibly damaging	0.86
R9023:Letm2	UTSW	8	26,077,236 (GRCm39)	missense
R9234:Letm2	UTSW	8	26,084,102 (GRCm39)	missense	probably benign	0.03
R9366:Letm2	UTSW	8	26,084,165 (GRCm39)	missense	probably damaging	1.00
R9636:Letm2	UTSW	8	26,083,719 (GRCm39)	missense	probably benign	0.33
R9690:Letm2	UTSW	8	26,077,435 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TGACCGGAAGACATTGGTGG -3'
(R):5'- AGCTATCTGGATGCAAAACTGG -3'

Sequencing Primer
(F):5'- ACATTGGTGGAGAGGCCTG -3'
(R):5'- CTATCTGGATGCAAAACTGGATAGAG -3'

Posted On

2016-06-06