Mutagenetix > Incidental Mutation

Incidental Mutation 'R5079:Stam'

386998

Institutional Source

Beutler Lab

Gene Symbol

Stam

Ensembl Gene

ENSMUSG00000026718

Gene Name

signal transducing adaptor molecule (SH3 domain and ITAM motif) 1

Synonyms

STAM1

MMRRC Submission

042668-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.246) question?

Stock #

R5079 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

14078910-14153296 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 14079350 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 8 (M8T)

Ref Sequence

ENSEMBL: ENSMUSP00000121228 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028050] [ENSMUST00000102960] [ENSMUST00000138989] [ENSMUST00000193636]

AlphaFold

P70297

Predicted Effect

probably benign
Transcript: ENSMUST00000028050

SMART Domains

Protein: ENSMUSP00000028050
Gene: ENSMUSG00000026718

Domain	Start	End	E-Value	Type
VHS	9	139	1.87e-63	SMART
UIM	171	190	1.6e-2	SMART
SH3	213	268	8.29e-23	SMART
PDB:3F1I\|C	301	377	9e-46	PDB
low complexity region	387	404	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102960

SMART Domains

Protein: ENSMUSP00000100025
Gene: ENSMUSG00000026718

Domain	Start	End	E-Value	Type
VHS	9	139	1.87e-63	SMART
UIM	171	190	1.6e-2	SMART
SH3	213	268	8.29e-23	SMART
Pfam:GAT	304	377	6.8e-10	PFAM
low complexity region	387	404	N/A	INTRINSIC
low complexity region	482	501	N/A	INTRINSIC
low complexity region	533	540	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000138989
AA Change: M8T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000121228
Gene: ENSMUSG00000026718
AA Change: M8T

Domain	Start	End	E-Value	Type
VHS	4	136	1.76e-59	SMART
UIM	168	187	1.6e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152524

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156901

Predicted Effect

probably benign
Transcript: ENSMUST00000193636

SMART Domains

Protein: ENSMUSP00000141207
Gene: ENSMUSG00000026718

Domain	Start	End	E-Value	Type
Pfam:VHS	5	44	2e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194771

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.6%

Validation Efficiency

90% (63/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the signal-transducing adaptor molecule family. These proteins mediate downstream signaling of cytokine receptors and also play a role in ER to Golgi trafficking by interacting with the coat protein II complex. The encoded protein also associates with hepatocyte growth factor-regulated substrate to form the endosomal sorting complex required for transport-0 (ESCRT-0), which sorts ubiquitinated membrane proteins to the ESCRT-1 complex for lysosomal degradation. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Feb 2011]
PHENOTYPE: Mice homozygous for a targeted null mutation exhibit progressive growth retardation, priapism, male infertility, degeneration of hippocapal CA3 pyramidal neurons and premature death, but exhibit normal lymphocyte development, proliferation and responses. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930522L14Rik	T	C	5: 109,885,196 (GRCm39)	S221G	probably benign	Het
Abca9	A	T	11: 110,036,395 (GRCm39)	F571L	possibly damaging	Het
Agbl4	T	A	4: 111,423,826 (GRCm39)	M284K	possibly damaging	Het
Ankrd16	A	G	2: 11,783,710 (GRCm39)	D104G	probably damaging	Het
Bpifc	T	C	10: 85,817,168 (GRCm39)	D230G	probably damaging	Het
Casc3	C	T	11: 98,701,252 (GRCm39)		probably benign	Het
Catsperd	T	C	17: 56,965,153 (GRCm39)		probably null	Het
Cpxm2	C	T	7: 131,756,014 (GRCm39)		probably null	Het
Crisp1	A	T	17: 40,619,867 (GRCm39)		probably null	Het
Crybg2	T	C	4: 133,801,564 (GRCm39)	I908T	possibly damaging	Het
Csn3	T	C	5: 88,077,626 (GRCm39)	V44A	possibly damaging	Het
Dipk1c	A	T	18: 84,748,702 (GRCm39)	H100L	probably benign	Het
Dop1a	T	A	9: 86,369,474 (GRCm39)	D102E	probably damaging	Het
Etfdh	T	C	3: 79,525,705 (GRCm39)	Y111C	probably damaging	Het
Fat3	T	C	9: 15,910,423 (GRCm39)	S1860G	probably benign	Het
Gba2	G	T	4: 43,568,640 (GRCm39)		probably benign	Het
Ggta1	A	G	2: 35,312,249 (GRCm39)	I43T	possibly damaging	Het
Glb1l2	T	C	9: 26,682,405 (GRCm39)	I149V	probably benign	Het
Gm5084	T	A	13: 60,360,639 (GRCm39)		noncoding transcript	Het
Gm5591	G	T	7: 38,221,560 (GRCm39)	P170T	probably benign	Het
Gucy2d	A	T	7: 98,107,475 (GRCm39)		probably null	Het
Itpr3	T	C	17: 27,317,397 (GRCm39)	F851L	probably damaging	Het
Kat2b	T	A	17: 53,970,666 (GRCm39)	I684N	probably damaging	Het
Klra17	C	A	6: 129,849,159 (GRCm39)	K138N	possibly damaging	Het
Lrrc4	T	A	6: 28,830,769 (GRCm39)	H282L	possibly damaging	Het
Lyst	T	C	13: 13,931,938 (GRCm39)	I3522T	probably benign	Het
Man2c1	A	G	9: 57,044,000 (GRCm39)	T312A	probably damaging	Het
Mapkbp1	A	G	2: 119,844,214 (GRCm39)	R313G	probably damaging	Het
N4bp2	G	A	5: 65,969,320 (GRCm39)	G1361R	probably damaging	Het
Nbas	A	T	12: 13,424,712 (GRCm39)	I984F	probably damaging	Het
Ncor1	T	A	11: 62,236,063 (GRCm39)	Q579L	possibly damaging	Het
Nme9	A	G	9: 99,341,755 (GRCm39)	Y35C	probably damaging	Het
Or5w13	C	A	2: 87,523,552 (GRCm39)	V225F	probably damaging	Het
Ormdl1	T	C	1: 53,348,093 (GRCm39)	V145A	probably damaging	Het
Paxbp1	C	A	16: 90,822,034 (GRCm39)		probably null	Het
Pcnx1	C	A	12: 82,025,863 (GRCm39)	S1530*	probably null	Het
Pogk	A	G	1: 166,226,733 (GRCm39)	W473R	probably damaging	Het
Pot1b	A	T	17: 55,976,801 (GRCm39)	S374T	probably benign	Het
Rcn1	A	G	2: 105,229,402 (GRCm39)	F50S	probably damaging	Het
Rcvrn	T	A	11: 67,593,767 (GRCm39)	I186N	probably damaging	Het
Rnd2	C	T	11: 101,359,825 (GRCm39)	L57F	probably damaging	Het
Ror1	T	A	4: 100,298,619 (GRCm39)	I664N	probably damaging	Het
Sall2	G	T	14: 52,552,211 (GRCm39)	A326E	probably damaging	Het
Sh2d6	G	A	6: 72,496,833 (GRCm39)	P66S	probably benign	Het
Slc6a20b	T	A	9: 123,427,563 (GRCm39)	S449C	probably damaging	Het
Slc9a3	A	T	13: 74,312,406 (GRCm39)	N668Y	probably damaging	Het
Slco1a8	A	C	6: 141,918,073 (GRCm39)	I601R	probably benign	Het
Sorcs2	T	G	5: 36,200,796 (GRCm39)	K584T	probably damaging	Het
Styk1	G	A	6: 131,278,676 (GRCm39)	P333S	probably damaging	Het
Sycp1	A	G	3: 102,786,116 (GRCm39)	C589R	possibly damaging	Het
Tas2r123	A	G	6: 132,824,681 (GRCm39)	I193V	probably benign	Het
Tnks1bp1	C	A	2: 84,892,970 (GRCm39)	Q304K	probably damaging	Het
Traf3ip2	T	C	10: 39,502,473 (GRCm39)	L207P	probably damaging	Het
Usp49	A	G	17: 47,984,146 (GRCm39)	S384G	possibly damaging	Het
Vezt	T	C	10: 93,856,486 (GRCm39)		probably null	Het
Vmn1r87	C	A	7: 12,866,253 (GRCm39)	M11I	probably benign	Het
Vmn2r39	A	G	7: 9,026,489 (GRCm39)	V504A	probably benign	Het
Wapl	G	A	14: 34,446,714 (GRCm39)	A607T	probably damaging	Het
Zfp638	A	G	6: 83,906,438 (GRCm39)	N201S	probably benign	Het

Other mutations in Stam

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00972:Stam	APN	2	14,120,779 (GRCm39)	intron	probably benign
IGL02964:Stam	APN	2	14,120,779 (GRCm39)	intron	probably benign
IGL03365:Stam	APN	2	14,151,201 (GRCm39)	nonsense	probably null
R0058:Stam	UTSW	2	14,142,952 (GRCm39)	missense	probably damaging	1.00
R0410:Stam	UTSW	2	14,143,802 (GRCm39)	missense	probably benign	0.04
R0479:Stam	UTSW	2	14,122,306 (GRCm39)	missense	probably damaging	1.00
R1018:Stam	UTSW	2	14,122,185 (GRCm39)	splice site	probably benign
R1554:Stam	UTSW	2	14,146,639 (GRCm39)	missense	probably benign
R1631:Stam	UTSW	2	14,151,059 (GRCm39)	nonsense	probably null
R1897:Stam	UTSW	2	14,133,837 (GRCm39)	missense	probably damaging	1.00
R3735:Stam	UTSW	2	14,133,823 (GRCm39)	missense	probably damaging	1.00
R3973:Stam	UTSW	2	14,143,772 (GRCm39)	missense	probably damaging	1.00
R4610:Stam	UTSW	2	14,120,669 (GRCm39)	missense	probably damaging	1.00
R4914:Stam	UTSW	2	14,107,227 (GRCm39)	missense	probably damaging	1.00
R5209:Stam	UTSW	2	14,151,158 (GRCm39)	missense	probably benign	0.04
R5574:Stam	UTSW	2	14,120,675 (GRCm39)	missense	probably damaging	1.00
R5636:Stam	UTSW	2	14,122,238 (GRCm39)	missense	probably damaging	1.00
R6968:Stam	UTSW	2	14,120,829 (GRCm39)	missense	probably damaging	1.00
R7384:Stam	UTSW	2	14,139,241 (GRCm39)	missense	probably benign	0.17
R8127:Stam	UTSW	2	14,122,284 (GRCm39)	missense	probably damaging	0.99
R8687:Stam	UTSW	2	14,151,096 (GRCm39)	utr 3 prime	probably benign
R8687:Stam	UTSW	2	14,151,091 (GRCm39)	utr 3 prime	probably benign
R8938:Stam	UTSW	2	14,133,984 (GRCm39)	critical splice donor site	probably null
R9423:Stam	UTSW	2	14,146,564 (GRCm39)	missense	possibly damaging	0.46
R9435:Stam	UTSW	2	14,120,801 (GRCm39)	missense	probably damaging	1.00
R9632:Stam	UTSW	2	14,122,204 (GRCm39)	missense	probably damaging	1.00
Z1088:Stam	UTSW	2	14,143,901 (GRCm39)	nonsense	probably null
Z1176:Stam	UTSW	2	14,133,375 (GRCm39)	missense	possibly damaging	0.95
Z1176:Stam	UTSW	2	14,120,824 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCAGGATGTTGGTAAGTGTTTTCAC -3'
(R):5'- GGGCCAGGCAAATACTTTGG -3'

Sequencing Primer
(F):5'- GTGTTTTCACCGCCCCC -3'
(R):5'- GGCGATAGAGCATATAATCAATCTGC -3'

Posted On

2016-06-06