Mutagenetix > Incidental Mutation

Incidental Mutation 'R0432:Rabgap1l'

38798

Institutional Source

Beutler Lab

Gene Symbol

Rabgap1l

Ensembl Gene

ENSMUSG00000026721

Gene Name

RAB GTPase activating protein 1-like

Synonyms

5830411O09Rik, 9630005B12Rik, Hh1, 8430421H08Rik

MMRRC Submission

038634-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0432 (G1)

Quality Score

192

Status

Validated

Chromosome

Chromosomal Location

160046744-160620781 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 160549775 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Arginine at position 277 (I277R)

Ref Sequence

ENSEMBL: ENSMUSP00000141666 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028049] [ENSMUST00000195442]

AlphaFold

A6H6A9

Predicted Effect

probably benign
Transcript: ENSMUST00000028049
AA Change: I305R

PolyPhen 2 Score 0.062 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000028049
Gene: ENSMUSG00000026721
AA Change: I305R

Domain	Start	End	E-Value	Type
low complexity region	113	124	N/A	INTRINSIC
PTB	127	260	4.47e-20	SMART
Pfam:DUF3694	290	421	8.1e-41	PFAM
low complexity region	483	496	N/A	INTRINSIC
TBC	535	747	5.13e-67	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000193191

Predicted Effect

probably benign
Transcript: ENSMUST00000195442
AA Change: I277R

PolyPhen 2 Score 0.101 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000141666
Gene: ENSMUSG00000026721
AA Change: I277R

Domain	Start	End	E-Value	Type
low complexity region	85	96	N/A	INTRINSIC
PTB	99	232	4.47e-20	SMART
Pfam:DUF3694	262	394	1.4e-42	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.3%
10x: 96.3%
20x: 92.9%

Validation Efficiency

99% (91/92)

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trap insertion are viable, fertile and overtly normal with no alterations in hematopoietic progenitor cell numbers or types. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310061I04Rik	A	G	17: 36,206,708 (GRCm39)	L110P	probably damaging	Het
4930522L14Rik	A	T	5: 109,884,785 (GRCm39)	C358S	probably damaging	Het
Abca8b	C	A	11: 109,870,841 (GRCm39)	V104F	possibly damaging	Het
Afap1l2	T	C	19: 56,905,551 (GRCm39)		probably benign	Het
Ahctf1	A	C	1: 179,611,726 (GRCm39)	I548R	probably damaging	Het
Alox12b	G	T	11: 69,060,382 (GRCm39)	G646V	probably damaging	Het
Aoah	C	T	13: 21,095,368 (GRCm39)		probably benign	Het
Arhgap39	C	T	15: 76,619,086 (GRCm39)	D833N	probably damaging	Het
Atxn1l	A	G	8: 110,458,325 (GRCm39)	W646R	probably damaging	Het
Cabp2	T	C	19: 4,134,903 (GRCm39)	I28T	possibly damaging	Het
Cacna1b	G	A	2: 24,577,716 (GRCm39)	T719I	probably damaging	Het
Camk1d	A	T	2: 5,449,946 (GRCm39)	H70Q	probably damaging	Het
Car1	T	C	3: 14,835,236 (GRCm39)	T170A	probably benign	Het
Ccdc162	T	C	10: 41,417,856 (GRCm39)	T2113A	probably benign	Het
Cdc5l	G	A	17: 45,726,610 (GRCm39)	R321W	probably damaging	Het
Cdh17	T	A	4: 11,771,273 (GRCm39)	C18*	probably null	Het
Cdk17	A	T	10: 93,073,652 (GRCm39)		probably benign	Het
Chd9	T	A	8: 91,721,078 (GRCm39)		probably benign	Het
Chrm5	T	A	2: 112,310,000 (GRCm39)	K372M	possibly damaging	Het
Clasp2	A	G	9: 113,738,487 (GRCm39)	T423A	probably benign	Het
Col11a1	A	G	3: 113,999,550 (GRCm39)		probably benign	Het
Col27a1	T	C	4: 63,143,848 (GRCm39)	M512T	possibly damaging	Het
Dclk3	A	G	9: 111,314,003 (GRCm39)	D693G	probably damaging	Het
Dcun1d3	T	A	7: 119,457,173 (GRCm39)	K180*	probably null	Het
Dmxl2	T	C	9: 54,324,235 (GRCm39)	R876G	probably benign	Het
Dnmbp	A	T	19: 43,843,296 (GRCm39)	Y432*	probably null	Het
Elapor2	G	T	5: 9,490,966 (GRCm39)	G659*	probably null	Het
Eml2	C	T	7: 18,913,456 (GRCm39)	Q125*	probably null	Het
Faap100	A	C	11: 120,264,702 (GRCm39)		probably benign	Het
Foxp2	T	C	6: 15,254,278 (GRCm39)		probably benign	Het
Gda	A	G	19: 21,394,471 (GRCm39)	Y129H	probably damaging	Het
Gga3	G	A	11: 115,481,350 (GRCm39)	R207C	probably damaging	Het
Glg1	T	C	8: 111,909,201 (GRCm39)	I496M	probably damaging	Het
Glt6d1	C	A	2: 25,684,739 (GRCm39)		probably null	Het
Gm10322	A	T	10: 59,452,030 (GRCm39)	H49L	possibly damaging	Het
Golga5	G	T	12: 102,442,467 (GRCm39)	V269F	possibly damaging	Het
Gramd2b	G	A	18: 56,607,141 (GRCm39)	C85Y	probably benign	Het
Grhl1	C	T	12: 24,632,918 (GRCm39)	P153L	probably benign	Het
Hdac9	T	C	12: 34,487,221 (GRCm39)	Q60R	probably damaging	Het
Hdlbp	T	C	1: 93,353,054 (GRCm39)	I414V	probably damaging	Het
Itpk1	C	T	12: 102,572,337 (GRCm39)		probably benign	Het
Itsn1	T	A	16: 91,612,408 (GRCm39)	Y266N	probably damaging	Het
Lipe	G	A	7: 25,097,913 (GRCm39)	P10L	probably benign	Het
Lrrc8a	A	G	2: 30,147,079 (GRCm39)	E631G	probably damaging	Het
Lvrn	T	A	18: 47,038,366 (GRCm39)	N973K	possibly damaging	Het
Man2c1	T	A	9: 57,042,881 (GRCm39)	H250Q	probably damaging	Het
Mup3	T	C	4: 62,003,519 (GRCm39)	T117A	probably benign	Het
Myo6	A	C	9: 80,181,256 (GRCm39)		probably benign	Het
Nbn	T	A	4: 15,983,951 (GRCm39)		probably benign	Het
Ncapg	T	A	5: 45,829,770 (GRCm39)	N157K	probably damaging	Het
Or4p7	C	T	2: 88,222,377 (GRCm39)	T262I	probably damaging	Het
Or5an1	T	A	19: 12,261,267 (GRCm39)	M285K	probably damaging	Het
Or5m12	T	A	2: 85,734,501 (GRCm39)	N299I	probably damaging	Het
Or5w14	G	A	2: 87,541,774 (GRCm39)	H159Y	probably benign	Het
Or9m1	T	C	2: 87,733,304 (GRCm39)	T239A	probably damaging	Het
P4ha1	T	A	10: 59,184,079 (GRCm39)	Y180*	probably null	Het
Pcdhb19	T	A	18: 37,632,588 (GRCm39)	F794L	probably benign	Het
Pdxdc1	T	A	16: 13,672,264 (GRCm39)	I379F	probably damaging	Het
Psme3	T	A	11: 101,211,268 (GRCm39)	S185T	possibly damaging	Het
Ptgr1	A	G	4: 58,978,045 (GRCm39)	S116P	probably damaging	Het
Ptpn23	A	T	9: 110,218,078 (GRCm39)		probably null	Het
Rapgef1	C	T	2: 29,569,828 (GRCm39)	T93I	possibly damaging	Het
Rbp3	A	T	14: 33,676,730 (GRCm39)	D226V	probably damaging	Het
Rnf144a	A	T	12: 26,389,328 (GRCm39)	C38S	probably damaging	Het
Rptor	C	T	11: 119,671,379 (GRCm39)	Q281*	probably null	Het
Rragd	T	C	4: 33,004,332 (GRCm39)	L208S	probably damaging	Het
Slc12a4	T	C	8: 106,686,120 (GRCm39)	E41G	probably damaging	Het
Slc16a1	G	T	3: 104,560,735 (GRCm39)	V347F	probably benign	Het
Slit1	G	A	19: 41,731,732 (GRCm39)	T39I	probably damaging	Het
Sra1	T	C	18: 36,810,556 (GRCm39)	N98S	probably benign	Het
Ssx2ip	T	C	3: 146,132,184 (GRCm39)	L215P	probably damaging	Het
Syne2	A	T	12: 75,995,838 (GRCm39)	H2126L	probably damaging	Het
Tep1	TTTCTTCTTCTT	TTTCTTCTT	14: 51,104,280 (GRCm39)		probably benign	Het
Tgfbi	T	C	13: 56,780,004 (GRCm39)		probably benign	Het
Tmem232	T	C	17: 65,563,498 (GRCm39)	M632V	probably damaging	Het
Tmem81	C	G	1: 132,435,567 (GRCm39)	I124M	probably damaging	Het
Tnnt3	T	G	7: 142,065,823 (GRCm39)	D153E	probably benign	Het
Tnrc6b	T	A	15: 80,807,647 (GRCm39)		probably benign	Het
Tpsab1	A	G	17: 25,562,798 (GRCm39)		probably benign	Het
Usp34	T	A	11: 23,351,505 (GRCm39)	V1431D	probably damaging	Het
Wdr49	G	T	3: 75,357,329 (GRCm39)	R285S	possibly damaging	Het
Wdr7	A	G	18: 63,929,320 (GRCm39)	Y1052C	probably damaging	Het
Zan	A	T	5: 137,380,578 (GRCm39)		probably benign	Het
Zfp652	G	A	11: 95,654,565 (GRCm39)	V323I	possibly damaging	Het
Zfp740	A	G	15: 102,121,094 (GRCm39)	T136A	possibly damaging	Het
Zfp82	C	T	7: 29,755,754 (GRCm39)	E443K	probably damaging	Het
Zfp874b	A	G	13: 67,629,955 (GRCm39)	S10P	probably damaging	Het
Zmynd19	A	G	2: 24,848,134 (GRCm39)	Y110C	probably benign	Het

Other mutations in Rabgap1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01095:Rabgap1l	APN	1	160,566,539 (GRCm39)	missense	probably benign	0.02
IGL01309:Rabgap1l	APN	1	160,528,368 (GRCm39)	missense	probably benign	0.00
IGL01448:Rabgap1l	APN	1	160,568,315 (GRCm39)	splice site	probably benign
IGL01886:Rabgap1l	APN	1	160,169,612 (GRCm39)	missense	probably damaging	1.00
IGL02010:Rabgap1l	APN	1	160,299,641 (GRCm39)	missense	probably damaging	0.99
IGL02079:Rabgap1l	APN	1	160,566,540 (GRCm39)	missense	probably benign	0.00
IGL02800:Rabgap1l	APN	1	160,299,623 (GRCm39)	missense	possibly damaging	0.73
IGL03343:Rabgap1l	APN	1	160,270,853 (GRCm39)	missense	probably benign
IGL03388:Rabgap1l	APN	1	160,561,093 (GRCm39)	splice site	probably null
IGL03406:Rabgap1l	APN	1	160,549,739 (GRCm39)	missense	probably damaging	1.00
amerigo	UTSW	1	160,551,606 (GRCm39)	missense	probably damaging	1.00
hispaniola	UTSW	1	160,472,877 (GRCm39)	critical splice donor site	probably null
R0047:Rabgap1l	UTSW	1	160,059,359 (GRCm39)	splice site	probably benign
R0047:Rabgap1l	UTSW	1	160,059,359 (GRCm39)	splice site	probably benign
R0048:Rabgap1l	UTSW	1	160,454,939 (GRCm39)	splice site	probably benign
R0099:Rabgap1l	UTSW	1	160,509,686 (GRCm39)	missense	possibly damaging	0.89
R0201:Rabgap1l	UTSW	1	160,281,315 (GRCm39)	splice site	probably benign
R1104:Rabgap1l	UTSW	1	160,059,445 (GRCm39)	splice site	probably benign
R1220:Rabgap1l	UTSW	1	160,566,479 (GRCm39)	missense	probably damaging	1.00
R1485:Rabgap1l	UTSW	1	160,561,250 (GRCm39)	missense	probably benign	0.06
R1569:Rabgap1l	UTSW	1	160,529,960 (GRCm39)	missense	probably benign	0.08
R1907:Rabgap1l	UTSW	1	160,472,880 (GRCm39)	missense	probably benign	0.07
R2128:Rabgap1l	UTSW	1	160,566,527 (GRCm39)	missense	probably benign	0.00
R2129:Rabgap1l	UTSW	1	160,566,527 (GRCm39)	missense	probably benign	0.00
R2177:Rabgap1l	UTSW	1	160,551,632 (GRCm39)	missense	possibly damaging	0.89
R4636:Rabgap1l	UTSW	1	160,169,660 (GRCm39)	splice site	probably null
R4722:Rabgap1l	UTSW	1	160,169,734 (GRCm39)	missense	possibly damaging	0.81
R4743:Rabgap1l	UTSW	1	160,281,353 (GRCm39)	missense	probably damaging	1.00
R4913:Rabgap1l	UTSW	1	160,066,111 (GRCm39)	missense	probably damaging	1.00
R4915:Rabgap1l	UTSW	1	160,269,412 (GRCm39)	missense	probably benign	0.01
R5035:Rabgap1l	UTSW	1	160,551,606 (GRCm39)	missense	probably damaging	1.00
R5087:Rabgap1l	UTSW	1	160,549,809 (GRCm39)	missense	probably damaging	1.00
R5437:Rabgap1l	UTSW	1	160,549,717 (GRCm39)	missense	probably damaging	1.00
R5507:Rabgap1l	UTSW	1	160,178,898 (GRCm39)	missense	possibly damaging	0.83
R5619:Rabgap1l	UTSW	1	160,066,142 (GRCm39)	missense	probably benign	0.00
R5691:Rabgap1l	UTSW	1	160,563,254 (GRCm39)	missense	probably damaging	1.00
R5837:Rabgap1l	UTSW	1	160,134,792 (GRCm39)	utr 3 prime	probably benign
R5881:Rabgap1l	UTSW	1	160,169,683 (GRCm39)	missense	probably damaging	1.00
R6045:Rabgap1l	UTSW	1	160,472,893 (GRCm39)	missense	probably benign	0.00
R6243:Rabgap1l	UTSW	1	160,472,877 (GRCm39)	critical splice donor site	probably null
R6294:Rabgap1l	UTSW	1	160,059,419 (GRCm39)	missense	probably benign	0.14
R6452:Rabgap1l	UTSW	1	160,281,331 (GRCm39)	missense	probably damaging	1.00
R6802:Rabgap1l	UTSW	1	160,561,250 (GRCm39)	missense	probably benign	0.06
R6945:Rabgap1l	UTSW	1	160,509,752 (GRCm39)	missense	probably benign	0.29
R7014:Rabgap1l	UTSW	1	160,169,642 (GRCm39)	missense	probably damaging	1.00
R7062:Rabgap1l	UTSW	1	160,054,220 (GRCm39)	missense	probably benign
R7089:Rabgap1l	UTSW	1	160,551,742 (GRCm39)	nonsense	probably null
R7170:Rabgap1l	UTSW	1	160,472,935 (GRCm39)	missense	probably damaging	1.00
R7172:Rabgap1l	UTSW	1	160,561,156 (GRCm39)	missense	probably benign	0.05
R7303:Rabgap1l	UTSW	1	160,509,667 (GRCm39)	missense	probably benign	0.01
R7357:Rabgap1l	UTSW	1	160,169,608 (GRCm39)	missense	probably damaging	1.00
R7466:Rabgap1l	UTSW	1	160,054,054 (GRCm39)	critical splice donor site	probably null
R7501:Rabgap1l	UTSW	1	160,528,358 (GRCm39)	missense	probably damaging	0.98
R7565:Rabgap1l	UTSW	1	160,078,987 (GRCm39)	missense
R7582:Rabgap1l	UTSW	1	160,509,654 (GRCm39)	missense	probably benign
R7740:Rabgap1l	UTSW	1	160,509,673 (GRCm39)	missense	probably benign	0.01
R7978:Rabgap1l	UTSW	1	160,078,838 (GRCm39)	missense
R7993:Rabgap1l	UTSW	1	160,528,424 (GRCm39)	missense	probably damaging	1.00
R8116:Rabgap1l	UTSW	1	160,530,012 (GRCm39)	missense	probably benign	0.22
R8672:Rabgap1l	UTSW	1	160,270,846 (GRCm39)	missense	probably damaging	1.00
R8986:Rabgap1l	UTSW	1	160,085,105 (GRCm39)	missense	probably damaging	0.99
R9010:Rabgap1l	UTSW	1	160,528,443 (GRCm39)	missense	possibly damaging	0.80
R9286:Rabgap1l	UTSW	1	160,051,818 (GRCm39)	nonsense	probably null
Z1177:Rabgap1l	UTSW	1	160,566,643 (GRCm39)	missense	possibly damaging	0.82

Predicted Primers

PCR Primer
(F):5'- GGCTGAATCAGTAGGAGGAGATCTGTAA -3'
(R):5'- AGCTGAATTAGAATGTGGCAGTCTTCAA -3'

Sequencing Primer
(F):5'- TCTGTAAGGGCAGTAAGGGG -3'
(R):5'- aaaggaggcagaggcaag -3'

Posted On

2013-05-23