Incidental Mutation 'R5066:Msantd5l'
ID 388336
Institutional Source Beutler Lab
Gene Symbol Msantd5l
Ensembl Gene ENSMUSG00000045942
Gene Name Myb/SANT DNA binding domain containing 5 like
Synonyms BC049762
MMRRC Submission 042656-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.064) question?
Stock # R5066 (G1)
Quality Score 225
Status Validated
Chromosome 11
Chromosomal Location 51144478-51153873 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 51145251 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Serine at position 112 (F112S)
Ref Sequence ENSEMBL: ENSMUSP00000155926 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054226] [ENSMUST00000065950] [ENSMUST00000231433]
AlphaFold A0A338P6D5
Predicted Effect possibly damaging
Transcript: ENSMUST00000054226
AA Change: F56S

PolyPhen 2 Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000061848
Gene: ENSMUSG00000045942
AA Change: F56S

DomainStartEndE-ValueType
low complexity region 33 45 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000065950
AA Change: F56S

PolyPhen 2 Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000071085
Gene: ENSMUSG00000045942
AA Change: F56S

DomainStartEndE-ValueType
low complexity region 33 45 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000231433
AA Change: F112S

PolyPhen 2 Score 0.958 (Sensitivity: 0.78; Specificity: 0.95)
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.0%
  • 20x: 94.4%
Validation Efficiency 100% (45/45)
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930544D05Rik A T 11: 70,507,417 (GRCm39) Y154F probably benign Het
Abca5 A T 11: 110,200,176 (GRCm39) probably benign Het
Agtpbp1 T A 13: 59,622,364 (GRCm39) D11V probably damaging Het
Aldh1a2 G A 9: 71,188,982 (GRCm39) A299T possibly damaging Het
Apc T A 18: 34,449,158 (GRCm39) V1984D probably damaging Het
Asxl3 C G 18: 22,658,356 (GRCm39) A2122G possibly damaging Het
Atp13a2 G A 4: 140,732,449 (GRCm39) V905M probably damaging Het
Atp1a1 C T 3: 101,489,420 (GRCm39) G731R probably damaging Het
Atrn T C 2: 130,836,113 (GRCm39) V1131A possibly damaging Het
Bcl2l13 T A 6: 120,863,982 (GRCm39) V312E possibly damaging Het
Chic2 A G 5: 75,187,817 (GRCm39) V81A possibly damaging Het
Drg1 A T 11: 3,209,353 (GRCm39) I122N possibly damaging Het
Efcab3 A G 11: 104,611,490 (GRCm39) D444G probably benign Het
Flt4 A G 11: 49,524,990 (GRCm39) N612S possibly damaging Het
Hadhb T C 5: 30,369,094 (GRCm39) probably benign Het
Heg1 G T 16: 33,559,041 (GRCm39) R856S probably benign Het
Ice2 A C 9: 69,315,573 (GRCm39) N143T probably benign Het
Igkv8-21 G A 6: 70,292,427 (GRCm39) Q4* probably null Het
Lrfn2 T C 17: 49,403,448 (GRCm39) S524P probably damaging Het
Mndal C A 1: 173,703,229 (GRCm39) A59S probably damaging Het
Mpp7 T C 18: 7,513,002 (GRCm39) E33G possibly damaging Het
Nedd4 T A 9: 72,617,801 (GRCm39) D187E probably damaging Het
Nfx1 A G 4: 40,991,868 (GRCm39) I519V probably benign Het
Or10p22 G A 10: 128,826,660 (GRCm39) R293Q probably damaging Het
Or6c204 T C 10: 129,022,433 (GRCm39) I286V possibly damaging Het
Padi1 T C 4: 140,556,748 (GRCm39) N153S probably damaging Het
Parp10 A G 15: 76,125,146 (GRCm39) probably benign Het
Setbp1 A T 18: 78,900,514 (GRCm39) M1051K probably damaging Het
Slc2a7 T A 4: 150,244,573 (GRCm39) M347K probably damaging Het
Slc45a2 C A 15: 11,012,693 (GRCm39) T232K probably benign Het
Snd1 C A 6: 28,888,239 (GRCm39) N891K probably damaging Het
Spata13 T C 14: 60,987,538 (GRCm39) Y899H possibly damaging Het
Sult1c2 T A 17: 54,281,026 (GRCm39) I26F probably damaging Het
Sybu A G 15: 44,541,040 (GRCm39) C341R probably damaging Het
Syk T A 13: 52,796,018 (GRCm39) S538T possibly damaging Het
Syne2 A G 12: 76,013,325 (GRCm39) T2840A probably benign Het
Thsd4 A G 9: 59,883,615 (GRCm39) C924R probably damaging Het
Tle1 A G 4: 72,076,504 (GRCm39) S175P probably benign Het
Tmbim4 C T 10: 120,053,537 (GRCm39) T112M probably benign Het
Tmprss11a A G 5: 86,567,859 (GRCm39) probably null Het
Tnc C A 4: 63,893,466 (GRCm39) D1698Y probably damaging Het
Ypel1 A G 16: 16,927,539 (GRCm39) Y18H probably benign Het
Other mutations in Msantd5l
AlleleSourceChrCoordTypePredicted EffectPPH Score
R2109:Msantd5l UTSW 11 51,145,264 (GRCm39) missense possibly damaging 0.92
R2180:Msantd5l UTSW 11 51,145,437 (GRCm39) missense probably damaging 0.96
R4706:Msantd5l UTSW 11 51,144,668 (GRCm39) missense possibly damaging 0.90
R6923:Msantd5l UTSW 11 51,144,808 (GRCm39) missense probably damaging 0.99
R7310:Msantd5l UTSW 11 51,145,474 (GRCm39) missense probably damaging 0.96
R8936:Msantd5l UTSW 11 51,145,249 (GRCm39) missense probably damaging 0.96
Z1177:Msantd5l UTSW 11 51,144,795 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- AATGTAGGCCTGTGGGAATG -3'
(R):5'- TGGACTGACTCTGAGATCAGG -3'

Sequencing Primer
(F):5'- CCTGTGGGAATGGGGATTC -3'
(R):5'- CTTCCTGCTGGAGTGGGAAG -3'
Posted On 2016-06-06