Incidental Mutation 'R0432:Slit1'
ID |
38882 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Slit1
|
Ensembl Gene |
ENSMUSG00000025020 |
Gene Name |
slit guidance ligand 1 |
Synonyms |
Slil1 |
MMRRC Submission |
038634-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R0432 (G1)
|
Quality Score |
162 |
Status
|
Validated
|
Chromosome |
19 |
Chromosomal Location |
41588696-41732104 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to A
at 41731732 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Isoleucine
at position 39
(T39I)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000128381
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025993]
[ENSMUST00000166496]
[ENSMUST00000169141]
[ENSMUST00000171586]
|
AlphaFold |
Q80TR4 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000025993
AA Change: T39I
PolyPhen 2
Score 0.971 (Sensitivity: 0.77; Specificity: 0.96)
|
SMART Domains |
Protein: ENSMUSP00000025993 Gene: ENSMUSG00000025020 AA Change: T39I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
FOLN
|
1418 |
1440 |
2.25e1 |
SMART |
EGF
|
1418 |
1451 |
1.28e-3 |
SMART |
CT
|
1462 |
1531 |
3.15e-4 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000157595
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000166496
AA Change: T39I
PolyPhen 2
Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)
|
SMART Domains |
Protein: ENSMUSP00000128381 Gene: ENSMUSG00000025020 AA Change: T39I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
low complexity region
|
1437 |
1458 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000169141
AA Change: T39I
PolyPhen 2
Score 0.971 (Sensitivity: 0.77; Specificity: 0.96)
|
SMART Domains |
Protein: ENSMUSP00000129034 Gene: ENSMUSG00000025020 AA Change: T39I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
FOLN
|
1418 |
1440 |
2.25e1 |
SMART |
EGF
|
1418 |
1451 |
1.28e-3 |
SMART |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000171586
AA Change: T39I
PolyPhen 2
Score 0.693 (Sensitivity: 0.86; Specificity: 0.92)
|
SMART Domains |
Protein: ENSMUSP00000126139 Gene: ENSMUSG00000025020 AA Change: T39I
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
2.24e-3 |
SMART |
LRR
|
133 |
155 |
3.98e1 |
SMART |
LRR_TYP
|
156 |
179 |
3.44e-4 |
SMART |
LRRCT
|
191 |
240 |
3.51e-6 |
SMART |
LRRNT
|
257 |
289 |
3e-8 |
SMART |
LRR
|
283 |
307 |
6.41e1 |
SMART |
LRR_TYP
|
308 |
331 |
8.22e-2 |
SMART |
LRR_TYP
|
332 |
355 |
9.08e-4 |
SMART |
LRR
|
356 |
379 |
2.82e0 |
SMART |
|
Meta Mutation Damage Score |
0.2259 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.3%
- 10x: 96.3%
- 20x: 92.9%
|
Validation Efficiency |
99% (91/92) |
MGI Phenotype |
PHENOTYPE: Mice homozygous for a reporter allele exhibit normal interneuron numbers and morphology. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 88 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2310061I04Rik |
A |
G |
17: 36,206,708 (GRCm39) |
L110P |
probably damaging |
Het |
4930522L14Rik |
A |
T |
5: 109,884,785 (GRCm39) |
C358S |
probably damaging |
Het |
Abca8b |
C |
A |
11: 109,870,841 (GRCm39) |
V104F |
possibly damaging |
Het |
Afap1l2 |
T |
C |
19: 56,905,551 (GRCm39) |
|
probably benign |
Het |
Ahctf1 |
A |
C |
1: 179,611,726 (GRCm39) |
I548R |
probably damaging |
Het |
Alox12b |
G |
T |
11: 69,060,382 (GRCm39) |
G646V |
probably damaging |
Het |
Aoah |
C |
T |
13: 21,095,368 (GRCm39) |
|
probably benign |
Het |
Arhgap39 |
C |
T |
15: 76,619,086 (GRCm39) |
D833N |
probably damaging |
Het |
Atxn1l |
A |
G |
8: 110,458,325 (GRCm39) |
W646R |
probably damaging |
Het |
Cabp2 |
T |
C |
19: 4,134,903 (GRCm39) |
I28T |
possibly damaging |
Het |
Cacna1b |
G |
A |
2: 24,577,716 (GRCm39) |
T719I |
probably damaging |
Het |
Camk1d |
A |
T |
2: 5,449,946 (GRCm39) |
H70Q |
probably damaging |
Het |
Car1 |
T |
C |
3: 14,835,236 (GRCm39) |
T170A |
probably benign |
Het |
Ccdc162 |
T |
C |
10: 41,417,856 (GRCm39) |
T2113A |
probably benign |
Het |
Cdc5l |
G |
A |
17: 45,726,610 (GRCm39) |
R321W |
probably damaging |
Het |
Cdh17 |
T |
A |
4: 11,771,273 (GRCm39) |
C18* |
probably null |
Het |
Cdk17 |
A |
T |
10: 93,073,652 (GRCm39) |
|
probably benign |
Het |
Chd9 |
T |
A |
8: 91,721,078 (GRCm39) |
|
probably benign |
Het |
Chrm5 |
T |
A |
2: 112,310,000 (GRCm39) |
K372M |
possibly damaging |
Het |
Clasp2 |
A |
G |
9: 113,738,487 (GRCm39) |
T423A |
probably benign |
Het |
Col11a1 |
A |
G |
3: 113,999,550 (GRCm39) |
|
probably benign |
Het |
Col27a1 |
T |
C |
4: 63,143,848 (GRCm39) |
M512T |
possibly damaging |
Het |
Dclk3 |
A |
G |
9: 111,314,003 (GRCm39) |
D693G |
probably damaging |
Het |
Dcun1d3 |
T |
A |
7: 119,457,173 (GRCm39) |
K180* |
probably null |
Het |
Dmxl2 |
T |
C |
9: 54,324,235 (GRCm39) |
R876G |
probably benign |
Het |
Dnmbp |
A |
T |
19: 43,843,296 (GRCm39) |
Y432* |
probably null |
Het |
Elapor2 |
G |
T |
5: 9,490,966 (GRCm39) |
G659* |
probably null |
Het |
Eml2 |
C |
T |
7: 18,913,456 (GRCm39) |
Q125* |
probably null |
Het |
Faap100 |
A |
C |
11: 120,264,702 (GRCm39) |
|
probably benign |
Het |
Foxp2 |
T |
C |
6: 15,254,278 (GRCm39) |
|
probably benign |
Het |
Gda |
A |
G |
19: 21,394,471 (GRCm39) |
Y129H |
probably damaging |
Het |
Gga3 |
G |
A |
11: 115,481,350 (GRCm39) |
R207C |
probably damaging |
Het |
Glg1 |
T |
C |
8: 111,909,201 (GRCm39) |
I496M |
probably damaging |
Het |
Glt6d1 |
C |
A |
2: 25,684,739 (GRCm39) |
|
probably null |
Het |
Gm10322 |
A |
T |
10: 59,452,030 (GRCm39) |
H49L |
possibly damaging |
Het |
Golga5 |
G |
T |
12: 102,442,467 (GRCm39) |
V269F |
possibly damaging |
Het |
Gramd2b |
G |
A |
18: 56,607,141 (GRCm39) |
C85Y |
probably benign |
Het |
Grhl1 |
C |
T |
12: 24,632,918 (GRCm39) |
P153L |
probably benign |
Het |
Hdac9 |
T |
C |
12: 34,487,221 (GRCm39) |
Q60R |
probably damaging |
Het |
Hdlbp |
T |
C |
1: 93,353,054 (GRCm39) |
I414V |
probably damaging |
Het |
Itpk1 |
C |
T |
12: 102,572,337 (GRCm39) |
|
probably benign |
Het |
Itsn1 |
T |
A |
16: 91,612,408 (GRCm39) |
Y266N |
probably damaging |
Het |
Lipe |
G |
A |
7: 25,097,913 (GRCm39) |
P10L |
probably benign |
Het |
Lrrc8a |
A |
G |
2: 30,147,079 (GRCm39) |
E631G |
probably damaging |
Het |
Lvrn |
T |
A |
18: 47,038,366 (GRCm39) |
N973K |
possibly damaging |
Het |
Man2c1 |
T |
A |
9: 57,042,881 (GRCm39) |
H250Q |
probably damaging |
Het |
Mup3 |
T |
C |
4: 62,003,519 (GRCm39) |
T117A |
probably benign |
Het |
Myo6 |
A |
C |
9: 80,181,256 (GRCm39) |
|
probably benign |
Het |
Nbn |
T |
A |
4: 15,983,951 (GRCm39) |
|
probably benign |
Het |
Ncapg |
T |
A |
5: 45,829,770 (GRCm39) |
N157K |
probably damaging |
Het |
Or4p7 |
C |
T |
2: 88,222,377 (GRCm39) |
T262I |
probably damaging |
Het |
Or5an1 |
T |
A |
19: 12,261,267 (GRCm39) |
M285K |
probably damaging |
Het |
Or5m12 |
T |
A |
2: 85,734,501 (GRCm39) |
N299I |
probably damaging |
Het |
Or5w14 |
G |
A |
2: 87,541,774 (GRCm39) |
H159Y |
probably benign |
Het |
Or9m1 |
T |
C |
2: 87,733,304 (GRCm39) |
T239A |
probably damaging |
Het |
P4ha1 |
T |
A |
10: 59,184,079 (GRCm39) |
Y180* |
probably null |
Het |
Pcdhb19 |
T |
A |
18: 37,632,588 (GRCm39) |
F794L |
probably benign |
Het |
Pdxdc1 |
T |
A |
16: 13,672,264 (GRCm39) |
I379F |
probably damaging |
Het |
Psme3 |
T |
A |
11: 101,211,268 (GRCm39) |
S185T |
possibly damaging |
Het |
Ptgr1 |
A |
G |
4: 58,978,045 (GRCm39) |
S116P |
probably damaging |
Het |
Ptpn23 |
A |
T |
9: 110,218,078 (GRCm39) |
|
probably null |
Het |
Rabgap1l |
A |
C |
1: 160,549,775 (GRCm39) |
I277R |
probably benign |
Het |
Rapgef1 |
C |
T |
2: 29,569,828 (GRCm39) |
T93I |
possibly damaging |
Het |
Rbp3 |
A |
T |
14: 33,676,730 (GRCm39) |
D226V |
probably damaging |
Het |
Rnf144a |
A |
T |
12: 26,389,328 (GRCm39) |
C38S |
probably damaging |
Het |
Rptor |
C |
T |
11: 119,671,379 (GRCm39) |
Q281* |
probably null |
Het |
Rragd |
T |
C |
4: 33,004,332 (GRCm39) |
L208S |
probably damaging |
Het |
Slc12a4 |
T |
C |
8: 106,686,120 (GRCm39) |
E41G |
probably damaging |
Het |
Slc16a1 |
G |
T |
3: 104,560,735 (GRCm39) |
V347F |
probably benign |
Het |
Sra1 |
T |
C |
18: 36,810,556 (GRCm39) |
N98S |
probably benign |
Het |
Ssx2ip |
T |
C |
3: 146,132,184 (GRCm39) |
L215P |
probably damaging |
Het |
Syne2 |
A |
T |
12: 75,995,838 (GRCm39) |
H2126L |
probably damaging |
Het |
Tep1 |
TTTCTTCTTCTT |
TTTCTTCTT |
14: 51,104,280 (GRCm39) |
|
probably benign |
Het |
Tgfbi |
T |
C |
13: 56,780,004 (GRCm39) |
|
probably benign |
Het |
Tmem232 |
T |
C |
17: 65,563,498 (GRCm39) |
M632V |
probably damaging |
Het |
Tmem81 |
C |
G |
1: 132,435,567 (GRCm39) |
I124M |
probably damaging |
Het |
Tnnt3 |
T |
G |
7: 142,065,823 (GRCm39) |
D153E |
probably benign |
Het |
Tnrc6b |
T |
A |
15: 80,807,647 (GRCm39) |
|
probably benign |
Het |
Tpsab1 |
A |
G |
17: 25,562,798 (GRCm39) |
|
probably benign |
Het |
Usp34 |
T |
A |
11: 23,351,505 (GRCm39) |
V1431D |
probably damaging |
Het |
Wdr49 |
G |
T |
3: 75,357,329 (GRCm39) |
R285S |
possibly damaging |
Het |
Wdr7 |
A |
G |
18: 63,929,320 (GRCm39) |
Y1052C |
probably damaging |
Het |
Zan |
A |
T |
5: 137,380,578 (GRCm39) |
|
probably benign |
Het |
Zfp652 |
G |
A |
11: 95,654,565 (GRCm39) |
V323I |
possibly damaging |
Het |
Zfp740 |
A |
G |
15: 102,121,094 (GRCm39) |
T136A |
possibly damaging |
Het |
Zfp82 |
C |
T |
7: 29,755,754 (GRCm39) |
E443K |
probably damaging |
Het |
Zfp874b |
A |
G |
13: 67,629,955 (GRCm39) |
S10P |
probably damaging |
Het |
Zmynd19 |
A |
G |
2: 24,848,134 (GRCm39) |
Y110C |
probably benign |
Het |
|
Other mutations in Slit1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00162:Slit1
|
APN |
19 |
41,639,274 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL00515:Slit1
|
APN |
19 |
41,612,940 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL00909:Slit1
|
APN |
19 |
41,590,694 (GRCm39) |
missense |
possibly damaging |
0.89 |
IGL00953:Slit1
|
APN |
19 |
41,590,739 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01116:Slit1
|
APN |
19 |
41,594,824 (GRCm39) |
missense |
possibly damaging |
0.93 |
IGL01457:Slit1
|
APN |
19 |
41,599,483 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01688:Slit1
|
APN |
19 |
41,717,545 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01720:Slit1
|
APN |
19 |
41,622,653 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01925:Slit1
|
APN |
19 |
41,596,817 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02008:Slit1
|
APN |
19 |
41,634,579 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02312:Slit1
|
APN |
19 |
41,590,119 (GRCm39) |
missense |
possibly damaging |
0.66 |
IGL02398:Slit1
|
APN |
19 |
41,590,676 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02542:Slit1
|
APN |
19 |
41,615,687 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02559:Slit1
|
APN |
19 |
41,709,524 (GRCm39) |
missense |
probably benign |
0.01 |
IGL02609:Slit1
|
APN |
19 |
41,590,743 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02623:Slit1
|
APN |
19 |
41,640,122 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02729:Slit1
|
APN |
19 |
41,591,773 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03230:Slit1
|
APN |
19 |
41,717,524 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03387:Slit1
|
APN |
19 |
41,591,881 (GRCm39) |
missense |
possibly damaging |
0.57 |
PIT4576001:Slit1
|
UTSW |
19 |
41,612,988 (GRCm39) |
missense |
possibly damaging |
0.52 |
R0366:Slit1
|
UTSW |
19 |
41,599,470 (GRCm39) |
missense |
probably damaging |
1.00 |
R0496:Slit1
|
UTSW |
19 |
41,596,750 (GRCm39) |
splice site |
probably benign |
|
R0722:Slit1
|
UTSW |
19 |
41,596,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R1468:Slit1
|
UTSW |
19 |
41,596,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R1468:Slit1
|
UTSW |
19 |
41,596,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R1488:Slit1
|
UTSW |
19 |
41,596,824 (GRCm39) |
missense |
probably damaging |
1.00 |
R1615:Slit1
|
UTSW |
19 |
41,639,110 (GRCm39) |
splice site |
probably benign |
|
R1694:Slit1
|
UTSW |
19 |
41,626,031 (GRCm39) |
missense |
possibly damaging |
0.69 |
R1762:Slit1
|
UTSW |
19 |
41,591,774 (GRCm39) |
missense |
probably damaging |
1.00 |
R1842:Slit1
|
UTSW |
19 |
41,709,477 (GRCm39) |
critical splice donor site |
probably null |
|
R1844:Slit1
|
UTSW |
19 |
41,614,012 (GRCm39) |
missense |
probably damaging |
1.00 |
R1940:Slit1
|
UTSW |
19 |
41,619,215 (GRCm39) |
missense |
probably damaging |
1.00 |
R2087:Slit1
|
UTSW |
19 |
41,625,922 (GRCm39) |
missense |
probably benign |
0.00 |
R2094:Slit1
|
UTSW |
19 |
41,594,819 (GRCm39) |
missense |
probably damaging |
0.99 |
R2095:Slit1
|
UTSW |
19 |
41,594,819 (GRCm39) |
missense |
probably damaging |
0.99 |
R2104:Slit1
|
UTSW |
19 |
41,590,686 (GRCm39) |
missense |
possibly damaging |
0.69 |
R2305:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2972:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2973:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2974:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R3159:Slit1
|
UTSW |
19 |
41,592,812 (GRCm39) |
missense |
probably benign |
|
R3752:Slit1
|
UTSW |
19 |
41,635,406 (GRCm39) |
critical splice donor site |
probably null |
|
R4095:Slit1
|
UTSW |
19 |
41,596,925 (GRCm39) |
intron |
probably benign |
|
R4282:Slit1
|
UTSW |
19 |
41,602,856 (GRCm39) |
missense |
probably benign |
|
R4417:Slit1
|
UTSW |
19 |
41,602,908 (GRCm39) |
missense |
probably damaging |
1.00 |
R4607:Slit1
|
UTSW |
19 |
41,605,232 (GRCm39) |
missense |
probably benign |
0.10 |
R4729:Slit1
|
UTSW |
19 |
41,635,459 (GRCm39) |
missense |
probably damaging |
1.00 |
R4756:Slit1
|
UTSW |
19 |
41,637,452 (GRCm39) |
missense |
probably damaging |
1.00 |
R4764:Slit1
|
UTSW |
19 |
41,709,483 (GRCm39) |
nonsense |
probably null |
|
R4849:Slit1
|
UTSW |
19 |
41,637,983 (GRCm39) |
missense |
probably benign |
0.17 |
R4874:Slit1
|
UTSW |
19 |
41,717,493 (GRCm39) |
critical splice donor site |
probably null |
|
R5581:Slit1
|
UTSW |
19 |
41,605,102 (GRCm39) |
critical splice donor site |
probably null |
|
R5699:Slit1
|
UTSW |
19 |
41,613,959 (GRCm39) |
critical splice donor site |
probably null |
|
R5888:Slit1
|
UTSW |
19 |
41,731,735 (GRCm39) |
missense |
probably damaging |
1.00 |
R5906:Slit1
|
UTSW |
19 |
41,594,813 (GRCm39) |
missense |
probably damaging |
1.00 |
R6176:Slit1
|
UTSW |
19 |
41,626,034 (GRCm39) |
missense |
probably damaging |
1.00 |
R6277:Slit1
|
UTSW |
19 |
41,588,948 (GRCm39) |
missense |
possibly damaging |
0.81 |
R6702:Slit1
|
UTSW |
19 |
41,603,309 (GRCm39) |
missense |
possibly damaging |
0.95 |
R6860:Slit1
|
UTSW |
19 |
41,605,154 (GRCm39) |
missense |
probably benign |
0.10 |
R7015:Slit1
|
UTSW |
19 |
41,618,325 (GRCm39) |
nonsense |
probably null |
|
R7172:Slit1
|
UTSW |
19 |
41,623,105 (GRCm39) |
missense |
probably damaging |
1.00 |
R7512:Slit1
|
UTSW |
19 |
41,589,074 (GRCm39) |
missense |
probably damaging |
1.00 |
R7568:Slit1
|
UTSW |
19 |
41,590,074 (GRCm39) |
missense |
probably damaging |
1.00 |
R7614:Slit1
|
UTSW |
19 |
41,622,639 (GRCm39) |
missense |
probably damaging |
1.00 |
R7650:Slit1
|
UTSW |
19 |
41,618,363 (GRCm39) |
missense |
probably damaging |
1.00 |
R7687:Slit1
|
UTSW |
19 |
41,639,128 (GRCm39) |
missense |
probably benign |
0.03 |
R7732:Slit1
|
UTSW |
19 |
41,592,847 (GRCm39) |
missense |
probably benign |
0.01 |
R7947:Slit1
|
UTSW |
19 |
41,599,248 (GRCm39) |
missense |
probably benign |
|
R7947:Slit1
|
UTSW |
19 |
41,599,247 (GRCm39) |
missense |
probably damaging |
1.00 |
R8171:Slit1
|
UTSW |
19 |
41,715,512 (GRCm39) |
missense |
probably damaging |
0.97 |
R8217:Slit1
|
UTSW |
19 |
41,612,959 (GRCm39) |
missense |
possibly damaging |
0.60 |
R8355:Slit1
|
UTSW |
19 |
41,634,473 (GRCm39) |
missense |
probably damaging |
1.00 |
R9025:Slit1
|
UTSW |
19 |
41,612,968 (GRCm39) |
missense |
probably benign |
0.01 |
R9124:Slit1
|
UTSW |
19 |
41,594,951 (GRCm39) |
missense |
probably benign |
0.02 |
R9288:Slit1
|
UTSW |
19 |
41,613,144 (GRCm39) |
intron |
probably benign |
|
R9343:Slit1
|
UTSW |
19 |
41,615,737 (GRCm39) |
missense |
probably damaging |
1.00 |
R9435:Slit1
|
UTSW |
19 |
41,591,764 (GRCm39) |
critical splice donor site |
probably null |
|
R9563:Slit1
|
UTSW |
19 |
41,596,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R9564:Slit1
|
UTSW |
19 |
41,591,861 (GRCm39) |
missense |
probably benign |
0.16 |
R9595:Slit1
|
UTSW |
19 |
41,637,851 (GRCm39) |
missense |
probably damaging |
1.00 |
R9667:Slit1
|
UTSW |
19 |
41,731,832 (GRCm39) |
nonsense |
probably null |
|
X0023:Slit1
|
UTSW |
19 |
41,590,079 (GRCm39) |
missense |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- ACCAAGGCACTGACTCCTCTACTG -3'
(R):5'- TAAGACGCCTTTCCTGGGTCTACG -3'
Sequencing Primer
(F):5'- ACTCCTCTACTGGCGACG -3'
(R):5'- TTCCTGGGTCTACGCACAG -3'
|
Posted On |
2013-05-23 |