Mutagenetix > Incidental Mutation

Incidental Mutation 'R4999:Trappc14'

389720

Institutional Source

Beutler Lab

Gene Symbol

Trappc14

Ensembl Gene

ENSMUSG00000036948

Gene Name

trafficking protein particle complex 14

Synonyms

Map11, BC037034

MMRRC Submission

042593-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.075) question?

Stock #

R4999 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

138257918-138262295 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 138259884 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 391 (T391S)

Ref Sequence

ENSEMBL: ENSMUSP00000046898 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048421] [ENSMUST00000062067] [ENSMUST00000100530] [ENSMUST00000159649] [ENSMUST00000161647] [ENSMUST00000161279] [ENSMUST00000159123] [ENSMUST00000159067] [ENSMUST00000159146]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000048421
AA Change: T391S

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000046898
Gene: ENSMUSG00000036948
AA Change: T391S

Domain	Start	End	E-Value	Type
low complexity region	53	71	N/A	INTRINSIC
low complexity region	75	93	N/A	INTRINSIC
low complexity region	95	114	N/A	INTRINSIC
low complexity region	215	225	N/A	INTRINSIC
low complexity region	488	502	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000062067

Predicted Effect

probably benign
Transcript: ENSMUST00000100530

SMART Domains

Protein: ENSMUSP00000098099
Gene: ENSMUSG00000075593

Domain	Start	End	E-Value	Type
Pfam:Gal-3-0_sulfotr	2	231	1.1e-57	PFAM
Pfam:Gal-3-0_sulfotr	270	463	1e-54	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124298

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125662

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138911

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141454

Predicted Effect

probably damaging
Transcript: ENSMUST00000163268
AA Change: T122S

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000127072
Gene: ENSMUSG00000091964
AA Change: T122S

Domain	Start	End	E-Value	Type
low complexity region	219	233	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159534

Predicted Effect

possibly damaging
Transcript: ENSMUST00000159649
AA Change: T122S

PolyPhen 2 Score 0.557 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000125208
Gene: ENSMUSG00000036948
AA Change: T122S

Domain	Start	End	E-Value	Type
low complexity region	219	233	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000170479
AA Change: H617L

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162557

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160157

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162632

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144460

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159872

Predicted Effect

probably benign
Transcript: ENSMUST00000161647

SMART Domains

Protein: ENSMUSP00000125084
Gene: ENSMUSG00000075593

Domain	Start	End	E-Value	Type
Pfam:Gal-3-0_sulfotr	4	226	5.3e-58	PFAM
Pfam:Gal-3-0_sulfotr	265	458	3.8e-55	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000161279

SMART Domains

Protein: ENSMUSP00000124841
Gene: ENSMUSG00000075593

Domain	Start	End	E-Value	Type
Pfam:Gal-3-0_sulfotr	2	231	1.1e-57	PFAM
Pfam:Gal-3-0_sulfotr	270	463	1e-54	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159123

SMART Domains

Protein: ENSMUSP00000137679
Gene: ENSMUSG00000036948

Domain	Start	End	E-Value	Type
low complexity region	53	71	N/A	INTRINSIC
low complexity region	75	93	N/A	INTRINSIC
low complexity region	95	114	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000159067

SMART Domains

Protein: ENSMUSP00000125178
Gene: ENSMUSG00000106247

Domain	Start	End	E-Value	Type
Pfam:Glypican	7	250	1e-90	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159146

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 92.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930444P10Rik	A	G	1: 16,139,022 (GRCm39)		probably null	Het
Abca4	T	A	3: 121,899,019 (GRCm39)	V667D	probably damaging	Het
Aco1	A	G	4: 40,176,507 (GRCm39)	I224V	probably damaging	Het
Arel1	C	T	12: 84,978,541 (GRCm39)	V364M	probably damaging	Het
Arhgap42	A	G	9: 9,009,435 (GRCm39)	V484A	probably damaging	Het
Asap2	T	C	12: 21,302,766 (GRCm39)	F681L	probably benign	Het
Atrn	C	A	2: 130,817,874 (GRCm39)	D809E	probably damaging	Het
Ccdc70	G	A	8: 22,463,266 (GRCm39)	V19M	possibly damaging	Het
Ccp110	G	T	7: 118,329,235 (GRCm39)	E73*	probably null	Het
Cfap57	A	C	4: 118,453,045 (GRCm39)	S553A	probably benign	Het
Cftr	A	G	6: 18,221,613 (GRCm39)	K212E	probably benign	Het
Chkb	A	T	15: 89,312,368 (GRCm39)	Y216N	probably damaging	Het
Cntnap2	G	T	6: 45,897,768 (GRCm39)	D149Y	probably damaging	Het
Cpd	A	G	11: 76,737,048 (GRCm39)		probably null	Het
Creb3l1	C	T	2: 91,813,571 (GRCm39)	D489N	probably benign	Het
Crhbp	A	G	13: 95,578,753 (GRCm39)	F123L	probably damaging	Het
Cryab	T	C	9: 50,665,909 (GRCm39)	V100A	possibly damaging	Het
Csmd2	T	C	4: 128,415,723 (GRCm39)	I2684T	probably benign	Het
Ctbp2	G	T	7: 132,616,378 (GRCm39)	P186T	possibly damaging	Het
Ctnna2	T	C	6: 76,892,745 (GRCm39)	N814S	possibly damaging	Het
Dntt	T	C	19: 41,028,295 (GRCm39)	V197A	probably damaging	Het
Fam135a	G	A	1: 24,059,758 (GRCm39)	A1187V	possibly damaging	Het
Filip1l	A	T	16: 57,390,778 (GRCm39)	Q455H	probably benign	Het
Grm2	T	C	9: 106,531,189 (GRCm39)	E100G	probably damaging	Het
Gtf2ird2	G	A	5: 134,246,306 (GRCm39)	V855M	probably damaging	Het
Heatr9	A	T	11: 83,409,618 (GRCm39)	I118N	possibly damaging	Het
Htra3	T	C	5: 35,828,469 (GRCm39)	H137R	probably benign	Het
Iars1	A	G	13: 49,863,137 (GRCm39)	S530G	probably damaging	Het
Klhdc4	T	A	8: 122,523,342 (GRCm39)	M510L	probably benign	Het
Lipc	T	C	9: 70,724,013 (GRCm39)	T204A	probably benign	Het
Lrp1	A	G	10: 127,389,648 (GRCm39)	V3129A	probably damaging	Het
Macf1	G	A	4: 123,388,702 (GRCm39)	T1120I	probably benign	Het
Maco1	A	G	4: 134,555,444 (GRCm39)	I343T	probably benign	Het
Map4	T	C	9: 109,867,445 (GRCm39)		probably benign	Het
Mbtps1	A	T	8: 120,260,087 (GRCm39)	V420D	probably damaging	Het
Mta2	G	T	19: 8,927,747 (GRCm39)	D523Y	probably benign	Het
Mtcl2	C	T	2: 156,864,776 (GRCm39)	G1144D	probably benign	Het
Muc4	A	G	16: 32,576,670 (GRCm39)		probably benign	Het
Mug1	C	T	6: 121,855,902 (GRCm39)	Q965*	probably null	Het
Myo1e	T	A	9: 70,260,594 (GRCm39)	I584N	probably damaging	Het
Nolc1	T	C	19: 46,067,359 (GRCm39)	V80A	probably damaging	Het
Nop56	G	T	2: 130,117,645 (GRCm39)	V91L	probably benign	Het
Or5b99	A	T	19: 12,976,583 (GRCm39)	M78L	probably benign	Het
Or5h23	A	T	16: 58,906,765 (GRCm39)	L27Q	probably damaging	Het
Or6f2	T	C	7: 139,756,933 (GRCm39)	V300A	probably damaging	Het
Osbpl3	T	C	6: 50,313,277 (GRCm39)	E107G	probably damaging	Het
Pde3a	T	A	6: 141,195,751 (GRCm39)	C146S	probably benign	Het
Pfkm	A	G	15: 98,026,123 (GRCm39)	M573V	probably damaging	Het
Pkd1l2	C	T	8: 117,774,113 (GRCm39)		probably null	Het
Plekhg3	T	C	12: 76,612,021 (GRCm39)	I374T	possibly damaging	Het
Ppig	T	A	2: 69,571,830 (GRCm39)	V183D	unknown	Het
Prom1	T	G	5: 44,194,876 (GRCm39)	I290L	probably benign	Het
Rufy3	T	A	5: 88,785,085 (GRCm39)	M387K	probably damaging	Het
Selenoo	G	A	15: 88,978,387 (GRCm39)	R270H	probably damaging	Het
Sema3d	T	A	5: 12,558,054 (GRCm39)		probably null	Het
Sema6c	C	T	3: 95,075,674 (GRCm39)	T175I	probably damaging	Het
Serpina3k	T	C	12: 104,307,305 (GRCm39)	I179T	probably damaging	Het
Sf3b3	T	C	8: 111,567,835 (GRCm39)	T207A	probably benign	Het
Slc22a26	C	A	19: 7,779,546 (GRCm39)	R90L	probably damaging	Het
Slitrk5	T	C	14: 111,917,648 (GRCm39)	V424A	probably damaging	Het
Smarca2	G	T	19: 26,698,255 (GRCm39)	E89*	probably null	Het
Stab2	T	A	10: 86,773,773 (GRCm39)	S853C	probably damaging	Het
Stk17b	A	T	1: 53,800,306 (GRCm39)		probably null	Het
Taar5	T	A	10: 23,847,445 (GRCm39)	I281N	possibly damaging	Het
Tars3	A	T	7: 65,308,683 (GRCm39)	E284D	probably damaging	Het
Tbx15	C	A	3: 99,223,649 (GRCm39)	T279K	probably damaging	Het
Tfr2	G	A	5: 137,585,187 (GRCm39)	V740I	probably benign	Het
Tlr12	T	C	4: 128,511,473 (GRCm39)	E259G	probably benign	Het
Tmem145	A	G	7: 25,008,459 (GRCm39)	T302A	probably benign	Het
Trpa1	G	T	1: 14,946,085 (GRCm39)	H1015Q	probably benign	Het
Tspan8	A	G	10: 115,653,534 (GRCm39)	Y10C	possibly damaging	Het
Ttll7	A	G	3: 146,600,224 (GRCm39)	N44S	probably damaging	Het
Uba7	T	C	9: 107,857,038 (GRCm39)		probably null	Het
Ube2j2	G	A	4: 156,030,841 (GRCm39)	M1I	probably null	Het
Ubr5	C	A	15: 38,009,912 (GRCm39)	A1022S	probably benign	Het
Usf1	T	G	1: 171,243,331 (GRCm39)	I36S	probably damaging	Het
Vmn1r181	A	T	7: 23,683,790 (GRCm39)	D85V	probably damaging	Het
Vmn1r3	A	T	4: 3,185,009 (GRCm39)	Y99*	probably null	Het
Vmn1r72	T	C	7: 11,404,300 (GRCm39)	I49M	possibly damaging	Het
Vmn2r99	A	G	17: 19,582,397 (GRCm39)	M1V	probably null	Het
Vsig10	T	A	5: 117,482,040 (GRCm39)	V410E	probably damaging	Het
Zc3h7b	A	G	15: 81,663,334 (GRCm39)	Y442C	probably damaging	Het
Zfyve26	G	T	12: 79,327,159 (GRCm39)	Y730*	probably null	Het

Other mutations in Trappc14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00517:Trappc14	APN	5	138,259,967 (GRCm39)	missense	possibly damaging	0.46
IGL01617:Trappc14	APN	5	138,260,478 (GRCm39)	missense	probably damaging	1.00
IGL02256:Trappc14	APN	5	138,258,577 (GRCm39)	missense	probably damaging	0.99
IGL02493:Trappc14	APN	5	138,261,432 (GRCm39)	splice site	probably null
IGL02904:Trappc14	APN	5	138,258,864 (GRCm39)	missense	probably benign	0.04
IGL03151:Trappc14	APN	5	138,260,934 (GRCm39)	missense	possibly damaging	0.95
R0005:Trappc14	UTSW	5	138,260,916 (GRCm39)	splice site	probably null
R0010:Trappc14	UTSW	5	138,258,555 (GRCm39)	splice site	probably null
R0010:Trappc14	UTSW	5	138,258,555 (GRCm39)	splice site	probably null
R0619:Trappc14	UTSW	5	138,262,088 (GRCm39)	unclassified	probably benign
R0630:Trappc14	UTSW	5	138,260,551 (GRCm39)	missense	probably damaging	0.98
R1579:Trappc14	UTSW	5	138,260,128 (GRCm39)	missense	probably benign	0.00
R1778:Trappc14	UTSW	5	138,260,739 (GRCm39)	splice site	probably null
R1816:Trappc14	UTSW	5	138,258,603 (GRCm39)	missense	possibly damaging	0.91
R2009:Trappc14	UTSW	5	138,259,191 (GRCm39)	missense	probably damaging	1.00
R4711:Trappc14	UTSW	5	138,261,167 (GRCm39)	unclassified	probably benign
R4923:Trappc14	UTSW	5	138,260,641 (GRCm39)	unclassified	probably benign
R5103:Trappc14	UTSW	5	138,260,562 (GRCm39)	missense	probably benign	0.15
R5221:Trappc14	UTSW	5	138,260,502 (GRCm39)	missense	probably benign	0.14
R5444:Trappc14	UTSW	5	138,259,260 (GRCm39)	splice site	probably null
R5720:Trappc14	UTSW	5	138,261,964 (GRCm39)	missense	probably benign	0.00
R6519:Trappc14	UTSW	5	138,260,110 (GRCm39)	missense	probably damaging	0.99
R6599:Trappc14	UTSW	5	138,261,720 (GRCm39)	splice site	probably null
R6918:Trappc14	UTSW	5	138,258,926 (GRCm39)	missense	probably benign	0.03
R7275:Trappc14	UTSW	5	138,261,839 (GRCm39)	missense	probably benign	0.18
R7460:Trappc14	UTSW	5	138,260,991 (GRCm39)	missense	probably benign	0.32
R7564:Trappc14	UTSW	5	138,261,104 (GRCm39)	splice site	probably null
R8745:Trappc14	UTSW	5	138,261,327 (GRCm39)	critical splice donor site	probably null
R9043:Trappc14	UTSW	5	138,259,889 (GRCm39)	missense	possibly damaging	0.84
R9057:Trappc14	UTSW	5	138,260,949 (GRCm39)	missense	probably damaging	1.00
R9540:Trappc14	UTSW	5	138,260,127 (GRCm39)	missense	probably benign	0.28
R9607:Trappc14	UTSW	5	138,259,862 (GRCm39)	missense	probably damaging	1.00
R9798:Trappc14	UTSW	5	138,259,940 (GRCm39)	missense	possibly damaging	0.48

Predicted Primers

PCR Primer
(F):5'- CCTATTAAGGTAGGGCTGGC -3'
(R):5'- CCTTGATTGCCGTGGTTCAG -3'

Sequencing Primer
(F):5'- CTGGCACTACTTGGAAGCTG -3'
(R):5'- TTCAGTGGTCCACGCCGAAG -3'

Posted On

2016-06-06