Mutagenetix > Incidental Mutation

Incidental Mutation 'R4999:Slitrk5'

389765

Institutional Source

Beutler Lab

Gene Symbol

Slitrk5

Ensembl Gene

ENSMUSG00000033214

Gene Name

SLIT and NTRK-like family, member 5

Synonyms

2610019D03Rik

MMRRC Submission

042593-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.451) question?

Stock #

R4999 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

111912547-111920576 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 111917648 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 424 (V424A)

Ref Sequence

ENSEMBL: ENSMUSP00000041499 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042767] [ENSMUST00000227891]

AlphaFold

Q810B7

Predicted Effect

probably damaging
Transcript: ENSMUST00000042767
AA Change: V424A

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000041499
Gene: ENSMUSG00000033214
AA Change: V424A

Domain	Start	End	E-Value	Type
Blast:LRRNT	47	85	3e-18	BLAST
low complexity region	86	96	N/A	INTRINSIC
LRR	108	127	2.76e2	SMART
LRR_TYP	128	151	1.67e-2	SMART
LRR	152	175	2.67e-1	SMART
LRR	176	199	1.08e-1	SMART
LRR	202	223	7.38e1	SMART
LRRCT	235	285	2.13e-5	SMART
low complexity region	308	323	N/A	INTRINSIC
LRRNT	373	410	9.53e-2	SMART
LRR	433	455	1.45e1	SMART
LRR_TYP	456	479	4.94e-5	SMART
LRR_TYP	480	503	7.78e-3	SMART
LRR_TYP	504	527	2.43e-4	SMART
LRR	528	551	1.86e2	SMART
LRRCT	563	613	3.59e-3	SMART
low complexity region	618	632	N/A	INTRINSIC
transmembrane domain	666	688	N/A	INTRINSIC
low complexity region	794	816	N/A	INTRINSIC
low complexity region	818	823	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000227891

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 92.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Members of the SLITRK family, such as SLITRK5, are integral membrane proteins with 2 N-terminal leucine-rich repeat (LRR) domains similar to those of SLIT proteins (see SLIT1; MIM 603742). Most SLITRKs, including SLITRK5, also have C-terminal regions that share homology with neurotrophin receptors (see NTRK1; MIM 191315). SLITRKs are expressed predominantly in neural tissues and have neurite-modulating activity (Aruga et al., 2003 [PubMed 14557068]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Mice homozygous for a null allele have abnormal medium spiny neuron morphology and exhibit behavioral abnormalities. [provided by MGI curators]

Allele List at MGI

All alleles(3) : Targeted(3)

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930444P10Rik	A	G	1: 16,139,022 (GRCm39)		probably null	Het
Abca4	T	A	3: 121,899,019 (GRCm39)	V667D	probably damaging	Het
Aco1	A	G	4: 40,176,507 (GRCm39)	I224V	probably damaging	Het
Arel1	C	T	12: 84,978,541 (GRCm39)	V364M	probably damaging	Het
Arhgap42	A	G	9: 9,009,435 (GRCm39)	V484A	probably damaging	Het
Asap2	T	C	12: 21,302,766 (GRCm39)	F681L	probably benign	Het
Atrn	C	A	2: 130,817,874 (GRCm39)	D809E	probably damaging	Het
Ccdc70	G	A	8: 22,463,266 (GRCm39)	V19M	possibly damaging	Het
Ccp110	G	T	7: 118,329,235 (GRCm39)	E73*	probably null	Het
Cfap57	A	C	4: 118,453,045 (GRCm39)	S553A	probably benign	Het
Cftr	A	G	6: 18,221,613 (GRCm39)	K212E	probably benign	Het
Chkb	A	T	15: 89,312,368 (GRCm39)	Y216N	probably damaging	Het
Cntnap2	G	T	6: 45,897,768 (GRCm39)	D149Y	probably damaging	Het
Cpd	A	G	11: 76,737,048 (GRCm39)		probably null	Het
Creb3l1	C	T	2: 91,813,571 (GRCm39)	D489N	probably benign	Het
Crhbp	A	G	13: 95,578,753 (GRCm39)	F123L	probably damaging	Het
Cryab	T	C	9: 50,665,909 (GRCm39)	V100A	possibly damaging	Het
Csmd2	T	C	4: 128,415,723 (GRCm39)	I2684T	probably benign	Het
Ctbp2	G	T	7: 132,616,378 (GRCm39)	P186T	possibly damaging	Het
Ctnna2	T	C	6: 76,892,745 (GRCm39)	N814S	possibly damaging	Het
Dntt	T	C	19: 41,028,295 (GRCm39)	V197A	probably damaging	Het
Fam135a	G	A	1: 24,059,758 (GRCm39)	A1187V	possibly damaging	Het
Filip1l	A	T	16: 57,390,778 (GRCm39)	Q455H	probably benign	Het
Grm2	T	C	9: 106,531,189 (GRCm39)	E100G	probably damaging	Het
Gtf2ird2	G	A	5: 134,246,306 (GRCm39)	V855M	probably damaging	Het
Heatr9	A	T	11: 83,409,618 (GRCm39)	I118N	possibly damaging	Het
Htra3	T	C	5: 35,828,469 (GRCm39)	H137R	probably benign	Het
Iars1	A	G	13: 49,863,137 (GRCm39)	S530G	probably damaging	Het
Klhdc4	T	A	8: 122,523,342 (GRCm39)	M510L	probably benign	Het
Lipc	T	C	9: 70,724,013 (GRCm39)	T204A	probably benign	Het
Lrp1	A	G	10: 127,389,648 (GRCm39)	V3129A	probably damaging	Het
Macf1	G	A	4: 123,388,702 (GRCm39)	T1120I	probably benign	Het
Maco1	A	G	4: 134,555,444 (GRCm39)	I343T	probably benign	Het
Map4	T	C	9: 109,867,445 (GRCm39)		probably benign	Het
Mbtps1	A	T	8: 120,260,087 (GRCm39)	V420D	probably damaging	Het
Mta2	G	T	19: 8,927,747 (GRCm39)	D523Y	probably benign	Het
Mtcl2	C	T	2: 156,864,776 (GRCm39)	G1144D	probably benign	Het
Muc4	A	G	16: 32,576,670 (GRCm39)		probably benign	Het
Mug1	C	T	6: 121,855,902 (GRCm39)	Q965*	probably null	Het
Myo1e	T	A	9: 70,260,594 (GRCm39)	I584N	probably damaging	Het
Nolc1	T	C	19: 46,067,359 (GRCm39)	V80A	probably damaging	Het
Nop56	G	T	2: 130,117,645 (GRCm39)	V91L	probably benign	Het
Or5b99	A	T	19: 12,976,583 (GRCm39)	M78L	probably benign	Het
Or5h23	A	T	16: 58,906,765 (GRCm39)	L27Q	probably damaging	Het
Or6f2	T	C	7: 139,756,933 (GRCm39)	V300A	probably damaging	Het
Osbpl3	T	C	6: 50,313,277 (GRCm39)	E107G	probably damaging	Het
Pde3a	T	A	6: 141,195,751 (GRCm39)	C146S	probably benign	Het
Pfkm	A	G	15: 98,026,123 (GRCm39)	M573V	probably damaging	Het
Pkd1l2	C	T	8: 117,774,113 (GRCm39)		probably null	Het
Plekhg3	T	C	12: 76,612,021 (GRCm39)	I374T	possibly damaging	Het
Ppig	T	A	2: 69,571,830 (GRCm39)	V183D	unknown	Het
Prom1	T	G	5: 44,194,876 (GRCm39)	I290L	probably benign	Het
Rufy3	T	A	5: 88,785,085 (GRCm39)	M387K	probably damaging	Het
Selenoo	G	A	15: 88,978,387 (GRCm39)	R270H	probably damaging	Het
Sema3d	T	A	5: 12,558,054 (GRCm39)		probably null	Het
Sema6c	C	T	3: 95,075,674 (GRCm39)	T175I	probably damaging	Het
Serpina3k	T	C	12: 104,307,305 (GRCm39)	I179T	probably damaging	Het
Sf3b3	T	C	8: 111,567,835 (GRCm39)	T207A	probably benign	Het
Slc22a26	C	A	19: 7,779,546 (GRCm39)	R90L	probably damaging	Het
Smarca2	G	T	19: 26,698,255 (GRCm39)	E89*	probably null	Het
Stab2	T	A	10: 86,773,773 (GRCm39)	S853C	probably damaging	Het
Stk17b	A	T	1: 53,800,306 (GRCm39)		probably null	Het
Taar5	T	A	10: 23,847,445 (GRCm39)	I281N	possibly damaging	Het
Tars3	A	T	7: 65,308,683 (GRCm39)	E284D	probably damaging	Het
Tbx15	C	A	3: 99,223,649 (GRCm39)	T279K	probably damaging	Het
Tfr2	G	A	5: 137,585,187 (GRCm39)	V740I	probably benign	Het
Tlr12	T	C	4: 128,511,473 (GRCm39)	E259G	probably benign	Het
Tmem145	A	G	7: 25,008,459 (GRCm39)	T302A	probably benign	Het
Trappc14	T	A	5: 138,259,884 (GRCm39)	T391S	probably damaging	Het
Trpa1	G	T	1: 14,946,085 (GRCm39)	H1015Q	probably benign	Het
Tspan8	A	G	10: 115,653,534 (GRCm39)	Y10C	possibly damaging	Het
Ttll7	A	G	3: 146,600,224 (GRCm39)	N44S	probably damaging	Het
Uba7	T	C	9: 107,857,038 (GRCm39)		probably null	Het
Ube2j2	G	A	4: 156,030,841 (GRCm39)	M1I	probably null	Het
Ubr5	C	A	15: 38,009,912 (GRCm39)	A1022S	probably benign	Het
Usf1	T	G	1: 171,243,331 (GRCm39)	I36S	probably damaging	Het
Vmn1r181	A	T	7: 23,683,790 (GRCm39)	D85V	probably damaging	Het
Vmn1r3	A	T	4: 3,185,009 (GRCm39)	Y99*	probably null	Het
Vmn1r72	T	C	7: 11,404,300 (GRCm39)	I49M	possibly damaging	Het
Vmn2r99	A	G	17: 19,582,397 (GRCm39)	M1V	probably null	Het
Vsig10	T	A	5: 117,482,040 (GRCm39)	V410E	probably damaging	Het
Zc3h7b	A	G	15: 81,663,334 (GRCm39)	Y442C	probably damaging	Het
Zfyve26	G	T	12: 79,327,159 (GRCm39)	Y730*	probably null	Het

Other mutations in Slitrk5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00801:Slitrk5	APN	14	111,918,097 (GRCm39)	missense	probably benign	0.05
IGL01624:Slitrk5	APN	14	111,918,526 (GRCm39)	missense	probably damaging	1.00
IGL01680:Slitrk5	APN	14	111,916,432 (GRCm39)	missense	probably benign	0.23
IGL03234:Slitrk5	APN	14	111,916,717 (GRCm39)	missense	probably benign	0.00
P0019:Slitrk5	UTSW	14	111,918,026 (GRCm39)	missense	possibly damaging	0.88
R0323:Slitrk5	UTSW	14	111,919,055 (GRCm39)	missense	probably damaging	0.99
R0334:Slitrk5	UTSW	14	111,918,256 (GRCm39)	missense	probably benign
R0392:Slitrk5	UTSW	14	111,916,465 (GRCm39)	missense	probably benign	0.06
R0659:Slitrk5	UTSW	14	111,918,121 (GRCm39)	missense	probably benign	0.00
R1344:Slitrk5	UTSW	14	111,917,821 (GRCm39)	missense	probably benign	0.04
R1754:Slitrk5	UTSW	14	111,917,951 (GRCm39)	missense	probably damaging	1.00
R1983:Slitrk5	UTSW	14	111,917,821 (GRCm39)	missense	probably benign	0.04
R2070:Slitrk5	UTSW	14	111,917,621 (GRCm39)	missense	probably damaging	0.99
R2071:Slitrk5	UTSW	14	111,917,621 (GRCm39)	missense	probably damaging	0.99
R3001:Slitrk5	UTSW	14	111,917,014 (GRCm39)	missense	probably damaging	1.00
R3002:Slitrk5	UTSW	14	111,917,014 (GRCm39)	missense	probably damaging	1.00
R3003:Slitrk5	UTSW	14	111,917,014 (GRCm39)	missense	probably damaging	1.00
R3885:Slitrk5	UTSW	14	111,917,229 (GRCm39)	nonsense	probably null
R3886:Slitrk5	UTSW	14	111,917,229 (GRCm39)	nonsense	probably null
R3888:Slitrk5	UTSW	14	111,917,229 (GRCm39)	nonsense	probably null
R4962:Slitrk5	UTSW	14	111,918,679 (GRCm39)	missense	probably benign	0.02
R5036:Slitrk5	UTSW	14	111,918,316 (GRCm39)	missense	possibly damaging	0.87
R5190:Slitrk5	UTSW	14	111,916,852 (GRCm39)	missense	probably damaging	1.00
R5237:Slitrk5	UTSW	14	111,919,118 (GRCm39)	missense	possibly damaging	0.94
R5669:Slitrk5	UTSW	14	111,919,055 (GRCm39)	missense	probably damaging	0.99
R5793:Slitrk5	UTSW	14	111,917,345 (GRCm39)	missense	probably damaging	1.00
R5839:Slitrk5	UTSW	14	111,917,030 (GRCm39)	missense	probably benign	0.00
R6083:Slitrk5	UTSW	14	111,919,157 (GRCm39)	missense	probably benign	0.01
R6224:Slitrk5	UTSW	14	111,917,248 (GRCm39)	unclassified	probably benign
R6225:Slitrk5	UTSW	14	111,917,248 (GRCm39)	unclassified	probably benign
R6230:Slitrk5	UTSW	14	111,917,248 (GRCm39)	unclassified	probably benign
R6337:Slitrk5	UTSW	14	111,917,684 (GRCm39)	missense	probably damaging	0.96
R6666:Slitrk5	UTSW	14	111,917,534 (GRCm39)	missense	probably damaging	0.96
R6818:Slitrk5	UTSW	14	111,917,726 (GRCm39)	missense	probably benign	0.32
R6895:Slitrk5	UTSW	14	111,919,085 (GRCm39)	missense	probably damaging	1.00
R7094:Slitrk5	UTSW	14	111,918,268 (GRCm39)	missense	probably benign	0.02
R7385:Slitrk5	UTSW	14	111,918,131 (GRCm39)	missense	probably benign	0.32
R8532:Slitrk5	UTSW	14	111,916,909 (GRCm39)	missense	probably benign
R8994:Slitrk5	UTSW	14	111,918,227 (GRCm39)	missense	probably benign	0.00
R9344:Slitrk5	UTSW	14	111,916,702 (GRCm39)	missense	probably damaging	0.97
R9374:Slitrk5	UTSW	14	111,916,496 (GRCm39)	missense	probably benign	0.23
R9499:Slitrk5	UTSW	14	111,916,496 (GRCm39)	missense	probably benign	0.23
R9500:Slitrk5	UTSW	14	111,916,726 (GRCm39)	missense	possibly damaging	0.89
R9512:Slitrk5	UTSW	14	111,917,252 (GRCm39)	missense	probably damaging	1.00
R9552:Slitrk5	UTSW	14	111,916,496 (GRCm39)	missense	probably benign	0.23
Z1177:Slitrk5	UTSW	14	111,917,285 (GRCm39)	missense	probably benign	0.37

Predicted Primers

PCR Primer
(F):5'- CTACAGTAACTATGGCCCCAGC -3'
(R):5'- GAAGAGATACTGCAGGCTCTG -3'

Sequencing Primer
(F):5'- GTAACTATGGCCCCAGCATAGC -3'
(R):5'- GGCTCTGCAGGCCATAGAATAATTC -3'

Posted On

2016-06-06