Mutagenetix > Incidental Mutation

Incidental Mutation 'R5106:Trit1'

392617

Institutional Source

Beutler Lab

Gene Symbol

Trit1

Ensembl Gene

ENSMUSG00000028653

Gene Name

tRNA isopentenyltransferase 1

Synonyms

MOD5, 2310075G14Rik

MMRRC Submission

042694-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5106 (G1)

Quality Score

182

Status

Validated

Chromosome

Chromosomal Location

122910390-122948742 bp(+) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

T to C at 122948106 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000099709 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102649]

AlphaFold

Q80UN9

Predicted Effect

probably benign
Transcript: ENSMUST00000102649

SMART Domains

Protein: ENSMUSP00000099709
Gene: ENSMUSG00000028653

Domain	Start	End	E-Value	Type
low complexity region	2	9	N/A	INTRINSIC
Pfam:IPT	23	109	2e-6	PFAM
Pfam:IPPT	58	335	1.9e-66	PFAM
Pfam:zf-C2H2_jaz	394	420	7.4e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141855

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147165

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 95.9%
20x: 91.0%

Validation Efficiency

100% (62/62)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that that is targeted to the mitochondrion and modifies transfer RNAs (tRNAs) by adding a dimethylallyl group onto the adenine at position 37. This modification is important for maintaining the correct reading frame during protein translation. This gene is considered a tumor suppressor and its expression can decrease cell growth. Alternative splicing results in multiple transcripts variants, most of which are likely non-functional. [provided by RefSeq, Aug 2015]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
C1qtnf2	G	A	11: 43,376,880 (GRCm39)	R84Q	possibly damaging	Het
Carmil2	T	A	8: 106,420,638 (GRCm39)		probably null	Het
Cenpf	A	T	1: 189,416,005 (GRCm39)	C107S	probably benign	Het
Cideb	T	C	14: 55,991,982 (GRCm39)	M191V	probably benign	Het
Cope	C	A	8: 70,763,097 (GRCm39)	R213S	possibly damaging	Het
Ctcf	T	C	8: 106,408,130 (GRCm39)		probably benign	Het
Daam2	T	C	17: 49,783,489 (GRCm39)	Y647C	probably damaging	Het
Dlg2	T	C	7: 92,091,894 (GRCm39)	Y920H	probably damaging	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Het
Fdps	C	A	3: 89,006,710 (GRCm39)	R127L	probably damaging	Het
G6pd2	C	T	5: 61,967,695 (GRCm39)	T490I	probably benign	Het
Gm6401	A	G	14: 41,787,463 (GRCm39)	M121T	probably damaging	Het
Gnl2	T	C	4: 124,947,329 (GRCm39)		probably null	Het
Gprc5c	G	T	11: 114,755,093 (GRCm39)	V257L	possibly damaging	Het
Gtf2a1l	A	G	17: 89,002,073 (GRCm39)	S310G	possibly damaging	Het
Igdcc4	T	C	9: 65,031,983 (GRCm39)	F500L	probably damaging	Het
Lgr4	A	T	2: 109,827,940 (GRCm39)	H207L	probably damaging	Het
Llcfc1	A	G	6: 41,662,310 (GRCm39)	M105V	probably benign	Het
Macroh2a1	A	G	13: 56,236,106 (GRCm39)	V213A	possibly damaging	Het
Map2k3	A	G	11: 60,832,708 (GRCm39)	K18E	probably damaging	Het
Mccc1	T	A	3: 36,026,713 (GRCm39)	D528V	probably benign	Het
Nedd4l	C	T	18: 65,326,376 (GRCm39)	T568M	probably damaging	Het
Nr3c1	A	C	18: 39,619,654 (GRCm39)	I211S	possibly damaging	Het
Nudt5	C	T	2: 5,859,640 (GRCm39)		probably benign	Het
Or2ag20	T	A	7: 106,464,595 (GRCm39)	M136K	probably damaging	Het
Or5d46	T	C	2: 88,170,454 (GRCm39)	Y182H	probably benign	Het
Or6c202	T	C	10: 128,996,106 (GRCm39)	Y249C	probably damaging	Het
Or9k2b	A	T	10: 130,016,177 (GRCm39)	S191T	probably benign	Het
Pcid2	A	T	8: 13,129,648 (GRCm39)	F326I	probably damaging	Het
Pcnt	A	T	10: 76,237,278 (GRCm39)	I1336N	probably damaging	Het
Pomk	T	C	8: 26,476,404 (GRCm39)	D50G	probably benign	Het
Ppp2r2a	T	C	14: 67,260,546 (GRCm39)	Y244C	probably damaging	Het
Ptprz1	A	G	6: 23,000,027 (GRCm39)	T706A	probably benign	Het
Rad54l	G	A	4: 115,956,961 (GRCm39)		probably benign	Het
Raph1	T	C	1: 60,572,459 (GRCm39)	D36G	probably damaging	Het
Rgs7	A	G	1: 174,904,416 (GRCm39)	S166P	possibly damaging	Het
Rnf183	C	G	4: 62,346,465 (GRCm39)	R111P	probably damaging	Het
Rp1l1	A	T	14: 64,265,395 (GRCm39)	D327V	probably damaging	Het
Rpl3l	A	G	17: 24,951,411 (GRCm39)	Y156C	probably damaging	Het
Slc25a54	G	T	3: 109,020,180 (GRCm39)	C398F	probably benign	Het
Slc39a2	A	G	14: 52,132,988 (GRCm39)	*310W	probably null	Het
Slit3	T	C	11: 35,503,194 (GRCm39)	C464R	probably damaging	Het
Smu1	A	T	4: 40,743,104 (GRCm39)	F345I	possibly damaging	Het
Ssc5d	T	A	7: 4,939,664 (GRCm39)	V700E	probably benign	Het
Stxbp3	T	C	3: 108,702,243 (GRCm39)	Y521C	probably benign	Het
Tenm4	T	C	7: 96,492,356 (GRCm39)	S1061P	probably damaging	Het
Thoc5	T	C	11: 4,860,630 (GRCm39)	S103P	probably damaging	Het
Tmem221	A	G	8: 72,008,522 (GRCm39)	F173L	probably benign	Het
Ttc23l	G	T	15: 10,551,636 (GRCm39)	T30K	possibly damaging	Het
Vmn2r106	T	C	17: 20,499,395 (GRCm39)		probably null	Het
Vmn2r38	C	A	7: 9,078,169 (GRCm39)	V738L	possibly damaging	Het
Zfp160	T	A	17: 21,247,023 (GRCm39)	H524Q	probably damaging	Het
Zfp791	T	A	8: 85,837,259 (GRCm39)	K202*	probably null	Het
Zfp985	T	A	4: 147,668,612 (GRCm39)	S493R	probably damaging	Het
Zkscan7	T	C	9: 122,725,198 (GRCm39)		probably benign	Het
Zwilch	A	C	9: 64,060,866 (GRCm39)	F329V	probably damaging	Het

Other mutations in Trit1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01859:Trit1	APN	4	122,943,344 (GRCm39)	missense	probably benign	0.16
R1675:Trit1	UTSW	4	122,948,029 (GRCm39)	missense	possibly damaging	0.82
R1935:Trit1	UTSW	4	122,948,033 (GRCm39)	missense	probably benign	0.00
R1936:Trit1	UTSW	4	122,948,033 (GRCm39)	missense	probably benign	0.00
R1940:Trit1	UTSW	4	122,948,033 (GRCm39)	missense	probably benign	0.00
R4801:Trit1	UTSW	4	122,910,431 (GRCm39)	missense	probably benign	0.40
R4802:Trit1	UTSW	4	122,910,431 (GRCm39)	missense	probably benign	0.40
R5644:Trit1	UTSW	4	122,942,965 (GRCm39)	missense	probably damaging	1.00
R6122:Trit1	UTSW	4	122,933,261 (GRCm39)	missense	possibly damaging	0.95
R6403:Trit1	UTSW	4	122,933,372 (GRCm39)	missense	possibly damaging	0.67
R7335:Trit1	UTSW	4	122,910,572 (GRCm39)	missense	possibly damaging	0.89
R7905:Trit1	UTSW	4	122,910,508 (GRCm39)	missense	probably damaging	1.00
R8138:Trit1	UTSW	4	122,937,582 (GRCm39)	nonsense	probably null
R9369:Trit1	UTSW	4	122,945,898 (GRCm39)	missense	possibly damaging	0.50

Predicted Primers

PCR Primer
(F):5'- ATCTCACTTGCACCAATTGAAG -3'
(R):5'- AATGTGCGATCTGTGCCTC -3'

Sequencing Primer
(F):5'- TCTCACTTGCACCAATTGAAGAAAAG -3'
(R):5'- CTGTGCCTCGTTCTAAAATAAAACC -3'

Posted On

2016-06-15