Incidental Mutation 'R0443:Or5p60'
| ID |
39277 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or5p60
|
| Ensembl Gene |
ENSMUSG00000110171 |
| Gene Name |
olfactory receptor family 5 subfamily P member 60 |
| Synonyms |
GA_x6K02T2PBJ9-10454128-10453163, MOR204-16, Olfr484 |
| MMRRC Submission |
038644-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.144)
|
| Stock # |
R0443 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
(trace)
|
| Chromosome |
7 |
| Chromosomal Location |
107723503-107724468 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 107724023 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 149
(V149A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150774
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000210881]
[ENSMUST00000214722]
|
| AlphaFold |
Q8VFD3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000073580
AA Change: V149A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000073267
Gene: ENSMUSG00000059996
AA Change: V149A
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
34 |
311 |
2.5e-53 |
PFAM |
|
Pfam:7tm_1
|
44 |
293 |
4.5e-21 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000157612
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000210881
AA Change: V149A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000214722
AA Change: V149A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.8%
- 10x: 97.3%
- 20x: 95.6%
|
| Validation Efficiency |
96% (52/54) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actr3b |
G |
T |
5: 26,053,409 (GRCm39) |
R246L |
probably damaging |
Het |
| Adam18 |
T |
C |
8: 25,119,653 (GRCm39) |
|
probably null |
Het |
| Ankhd1 |
A |
G |
18: 36,777,652 (GRCm39) |
S1612G |
possibly damaging |
Het |
| Caskin1 |
C |
T |
17: 24,724,374 (GRCm39) |
A1054V |
probably damaging |
Het |
| Casz1 |
T |
C |
4: 149,033,368 (GRCm39) |
V1380A |
possibly damaging |
Het |
| Ccn2 |
T |
C |
10: 24,471,701 (GRCm39) |
|
probably benign |
Het |
| Cnot6l |
T |
G |
5: 96,239,604 (GRCm39) |
|
probably benign |
Het |
| Crat |
T |
C |
2: 30,293,640 (GRCm39) |
|
probably benign |
Het |
| Cux2 |
C |
T |
5: 122,025,500 (GRCm39) |
R56H |
possibly damaging |
Het |
| Dst |
A |
G |
1: 34,333,631 (GRCm39) |
|
probably null |
Het |
| Dync2h1 |
G |
T |
9: 7,167,244 (GRCm39) |
|
probably null |
Het |
| Epg5 |
T |
C |
18: 77,999,118 (GRCm39) |
|
probably benign |
Het |
| Ergic3 |
G |
A |
2: 155,858,707 (GRCm39) |
V278M |
probably benign |
Het |
| Fam20b |
A |
T |
1: 156,509,023 (GRCm39) |
D396E |
probably benign |
Het |
| Gapvd1 |
A |
G |
2: 34,594,633 (GRCm39) |
|
probably benign |
Het |
| Golga1 |
A |
T |
2: 38,908,453 (GRCm39) |
S749T |
probably damaging |
Het |
| Gsdma2 |
C |
T |
11: 98,548,514 (GRCm39) |
T255I |
probably damaging |
Het |
| Itga1 |
T |
A |
13: 115,128,996 (GRCm39) |
D554V |
probably benign |
Het |
| Itgam |
C |
T |
7: 127,680,806 (GRCm39) |
A245V |
probably damaging |
Het |
| Kcnk15 |
A |
G |
2: 163,700,243 (GRCm39) |
T161A |
probably benign |
Het |
| Map3k19 |
A |
T |
1: 127,750,152 (GRCm39) |
N1066K |
probably benign |
Het |
| Ms4a6b |
A |
G |
19: 11,499,044 (GRCm39) |
I53V |
possibly damaging |
Het |
| Mtf1 |
C |
T |
4: 124,718,075 (GRCm39) |
|
probably benign |
Het |
| Neb |
T |
C |
2: 52,051,489 (GRCm39) |
|
probably null |
Het |
| Nop9 |
A |
G |
14: 55,991,205 (GRCm39) |
S621G |
probably benign |
Het |
| Or1e19 |
A |
G |
11: 73,316,581 (GRCm39) |
V76A |
probably damaging |
Het |
| Or9a2 |
T |
A |
6: 41,748,829 (GRCm39) |
I135F |
possibly damaging |
Het |
| Pacs1 |
A |
T |
19: 5,322,611 (GRCm39) |
Y102* |
probably null |
Het |
| Pcdhb10 |
A |
C |
18: 37,545,485 (GRCm39) |
D187A |
probably damaging |
Het |
| Pih1d2 |
A |
G |
9: 50,532,403 (GRCm39) |
R170G |
possibly damaging |
Het |
| Pikfyve |
A |
G |
1: 65,235,865 (GRCm39) |
H179R |
probably damaging |
Het |
| Pknox1 |
A |
G |
17: 31,811,193 (GRCm39) |
S156G |
probably damaging |
Het |
| Prkcz |
T |
A |
4: 155,353,597 (GRCm39) |
D250V |
probably damaging |
Het |
| Psg16 |
T |
A |
7: 16,829,088 (GRCm39) |
I224N |
probably benign |
Het |
| Ro60 |
A |
G |
1: 143,641,661 (GRCm39) |
|
probably benign |
Het |
| Slc25a40 |
T |
A |
5: 8,497,348 (GRCm39) |
S229T |
probably benign |
Het |
| Slc43a2 |
T |
C |
11: 75,435,493 (GRCm39) |
|
probably benign |
Het |
| Snrnp40 |
C |
G |
4: 130,271,836 (GRCm39) |
|
probably null |
Het |
| Tas2r129 |
G |
T |
6: 132,928,159 (GRCm39) |
C32F |
probably benign |
Het |
| Tfap2d |
C |
T |
1: 19,174,591 (GRCm39) |
R15C |
possibly damaging |
Het |
| Tonsl |
T |
C |
15: 76,523,884 (GRCm39) |
S39G |
probably benign |
Het |
| Trpc2 |
A |
G |
7: 101,742,727 (GRCm39) |
|
probably benign |
Het |
| Ttc17 |
A |
G |
2: 94,208,439 (GRCm39) |
F144S |
probably benign |
Het |
| Twnk |
G |
T |
19: 44,996,578 (GRCm39) |
G337V |
possibly damaging |
Het |
| Uvssa |
A |
G |
5: 33,546,168 (GRCm39) |
R180G |
possibly damaging |
Het |
| Vmn1r197 |
T |
A |
13: 22,512,241 (GRCm39) |
I54K |
possibly damaging |
Het |
| Vmn1r71 |
G |
A |
7: 10,482,238 (GRCm39) |
T84I |
probably benign |
Het |
| Zbtb49 |
T |
C |
5: 38,358,174 (GRCm39) |
E693G |
probably benign |
Het |
|
| Other mutations in Or5p60 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01879:Or5p60
|
APN |
7 |
107,724,371 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
IGL01899:Or5p60
|
APN |
7 |
107,724,048 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02124:Or5p60
|
APN |
7 |
107,724,249 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02622:Or5p60
|
APN |
7 |
107,723,595 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03188:Or5p60
|
APN |
7 |
107,723,841 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0389:Or5p60
|
UTSW |
7 |
107,724,023 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0731:Or5p60
|
UTSW |
7 |
107,723,941 (GRCm39) |
missense |
probably benign |
0.12 |
|
R1061:Or5p60
|
UTSW |
7 |
107,723,663 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1505:Or5p60
|
UTSW |
7 |
107,724,200 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1591:Or5p60
|
UTSW |
7 |
107,723,571 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R1789:Or5p60
|
UTSW |
7 |
107,724,122 (GRCm39) |
missense |
probably benign |
0.44 |
|
R2988:Or5p60
|
UTSW |
7 |
107,724,045 (GRCm39) |
nonsense |
probably null |
|
|
R4778:Or5p60
|
UTSW |
7 |
107,723,687 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5288:Or5p60
|
UTSW |
7 |
107,724,375 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5644:Or5p60
|
UTSW |
7 |
107,723,858 (GRCm39) |
missense |
probably benign |
0.04 |
|
R6112:Or5p60
|
UTSW |
7 |
107,724,369 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6351:Or5p60
|
UTSW |
7 |
107,723,637 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6934:Or5p60
|
UTSW |
7 |
107,724,026 (GRCm39) |
missense |
probably benign |
0.14 |
|
R7094:Or5p60
|
UTSW |
7 |
107,723,840 (GRCm39) |
missense |
probably benign |
0.35 |
|
R7135:Or5p60
|
UTSW |
7 |
107,723,781 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7422:Or5p60
|
UTSW |
7 |
107,724,068 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7660:Or5p60
|
UTSW |
7 |
107,724,041 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7916:Or5p60
|
UTSW |
7 |
107,724,329 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R8489:Or5p60
|
UTSW |
7 |
107,724,372 (GRCm39) |
missense |
probably benign |
0.03 |
|
R9204:Or5p60
|
UTSW |
7 |
107,723,935 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R9526:Or5p60
|
UTSW |
7 |
107,723,801 (GRCm39) |
missense |
probably benign |
0.06 |
|
X0021:Or5p60
|
UTSW |
7 |
107,724,314 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0025:Or5p60
|
UTSW |
7 |
107,723,606 (GRCm39) |
nonsense |
probably null |
|
|
Z1176:Or5p60
|
UTSW |
7 |
107,724,086 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGAGTATCTTGACTTGGGCATCACG -3'
(R):5'- CTTGGCTTCTGCTGACATAGGCTAC -3'
Sequencing Primer
(F):5'- CTTGACTTGGGCATCACGTAAATG -3'
(R):5'- TGCTGACATAGGCTACTCATC -3'
|
| Posted On |
2013-05-23 |
Incidental Mutation