Mutagenetix > Incidental Mutation

Incidental Mutation 'R5121:Ltk'

392983

Institutional Source

Beutler Lab

Gene Symbol

Ltk

Ensembl Gene

ENSMUSG00000027297

Gene Name

leukocyte tyrosine kinase

Synonyms

MMRRC Submission

042709-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5121 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

119581807-119590912 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 119583708 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 256 (N256D)

Ref Sequence

ENSEMBL: ENSMUSP00000138201 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028758] [ENSMUST00000028759] [ENSMUST00000082130] [ENSMUST00000140224] [ENSMUST00000182203]

AlphaFold

P08923

Predicted Effect

probably benign
Transcript: ENSMUST00000028758

SMART Domains

Protein: ENSMUSP00000028758
Gene: ENSMUSG00000027296

Domain	Start	End	E-Value	Type
low complexity region	40	64	N/A	INTRINSIC
low complexity region	116	149	N/A	INTRINSIC
Pfam:IPK	243	454	1.3e-43	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000028759
AA Change: N568D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000028759
Gene: ENSMUSG00000027297
AA Change: N568D

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:Gly_rich	111	381	2.4e-21	PFAM
transmembrane domain	423	445	N/A	INTRINSIC
TyrKc	506	773	2.61e-127	SMART
low complexity region	824	841	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000082130
AA Change: N507D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000080774
Gene: ENSMUSG00000027297
AA Change: N507D

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:Gly_rich	109	294	6.1e-16	PFAM
transmembrane domain	362	384	N/A	INTRINSIC
TyrKc	445	712	2.61e-127	SMART
low complexity region	763	780	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127470

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134295

Predicted Effect

probably damaging
Transcript: ENSMUST00000140224
AA Change: N156D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000123020
Gene: ENSMUSG00000027297
AA Change: N156D

Domain	Start	End	E-Value	Type
low complexity region	5	19	N/A	INTRINSIC
transmembrane domain	111	133	N/A	INTRINSIC
TyrKc	194	461	1.2e-129	SMART
low complexity region	512	529	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000182203
AA Change: N256D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138201
Gene: ENSMUSG00000027297
AA Change: N256D

Domain	Start	End	E-Value	Type
low complexity region	5	19	N/A	INTRINSIC
transmembrane domain	111	133	N/A	INTRINSIC
TyrKc	194	461	2.61e-127	SMART
low complexity region	512	529	N/A	INTRINSIC

Meta Mutation Damage Score

0.4344

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.7%

Validation Efficiency

MGI Phenotype

FUNCTION: The protein encoded by this gene is a member of the ros/insulin receptor family of tyrosine kinases. Tyrosine-specific phosphorylation of proteins is a key to the control of diverse pathways leading to cell growth and differentiation. Four alternatively spliced transcript variants encoding different isoforms have been described for this gene. These transcripts are expressed in a tissue-specific manner in lymphocytes, brain and neuroblastoma cells, and the encoded isoforms exhibit different subcellular localization. The lymphocyte and brain specific variants initiate translation at non-AUG (CUG) start codons. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acvr1c	A	G	2: 58,171,662 (GRCm39)	I234T	probably damaging	Het
Adam24	A	G	8: 41,132,550 (GRCm39)	E6G	probably damaging	Het
Amz1	A	G	5: 140,729,919 (GRCm39)	D151G	probably benign	Het
Arhgap24	T	C	5: 102,989,201 (GRCm39)	L10P	probably damaging	Het
Arhgap25	T	G	6: 87,509,846 (GRCm39)	N8T	probably benign	Het
Arsi	T	G	18: 61,050,511 (GRCm39)	F465V	probably damaging	Het
Atp2c1	A	G	9: 105,326,024 (GRCm39)	V293A	probably damaging	Het
Bzw2	A	G	12: 36,154,350 (GRCm39)	L340P	probably damaging	Het
Camkmt	C	T	17: 85,404,009 (GRCm39)	T77I	probably benign	Het
Camsap1	G	T	2: 25,825,562 (GRCm39)	Q1375K	probably benign	Het
Catsper2	G	T	2: 121,227,604 (GRCm39)		probably null	Het
Cd163	T	C	6: 124,294,948 (GRCm39)	C671R	probably damaging	Het
Cdk7	T	C	13: 100,854,192 (GRCm39)		probably null	Het
Cfi	C	T	3: 129,666,726 (GRCm39)	P483L	probably damaging	Het
Chn2	C	T	6: 54,195,546 (GRCm39)	L72F	possibly damaging	Het
Cimip4	C	T	15: 78,270,373 (GRCm39)	E132K	probably benign	Het
Cntn2	C	A	1: 132,444,798 (GRCm39)	E363*	probably null	Het
Crebbp	T	C	16: 3,911,375 (GRCm39)	E999G	probably damaging	Het
Cspp1	T	A	1: 10,196,688 (GRCm39)	N900K	probably damaging	Het
Cts3	A	C	13: 61,715,409 (GRCm39)	I141M	probably benign	Het
Cwc27	A	T	13: 104,940,861 (GRCm39)	V166D	probably damaging	Het
Defb26	T	C	2: 152,350,085 (GRCm39)	E65G	possibly damaging	Het
Dnah8	A	G	17: 31,029,327 (GRCm39)	T4099A	probably benign	Het
Eml6	A	G	11: 29,694,606 (GRCm39)	F1953L	probably benign	Het
Etl4	T	A	2: 20,344,922 (GRCm39)		probably null	Het
Fbln1	A	G	15: 85,121,872 (GRCm39)	E331G	probably damaging	Het
Gabra4	G	A	5: 71,729,546 (GRCm39)	H76Y	probably benign	Het
Gcat	T	C	15: 78,919,482 (GRCm39)	V149A	probably damaging	Het
Glp2r	A	T	11: 67,612,926 (GRCm39)		probably null	Het
Gm572	T	C	4: 148,751,302 (GRCm39)		probably null	Het
Golgb1	T	C	16: 36,739,620 (GRCm39)	V2653A	probably damaging	Het
Grap2	G	A	15: 80,530,345 (GRCm39)	R155Q	possibly damaging	Het
Gspt1	T	A	16: 11,041,165 (GRCm39)	I533L	probably damaging	Het
Gypa	A	T	8: 81,222,977 (GRCm39)	Y27F	unknown	Het
Hipk4	G	A	7: 27,228,917 (GRCm39)	V456I	probably benign	Het
Homer2	A	T	7: 81,299,311 (GRCm39)	D51E	probably benign	Het
Hspa1b	A	T	17: 35,176,980 (GRCm39)	V335E	possibly damaging	Het
Ift122	A	G	6: 115,889,495 (GRCm39)	T827A	probably benign	Het
Igkv1-35	T	C	6: 69,988,119 (GRCm39)	N58S	probably benign	Het
Kat6b	A	T	14: 21,669,326 (GRCm39)	H297L	probably damaging	Het
Kirrel3	G	T	9: 34,924,601 (GRCm39)	G296W	probably damaging	Het
Klhl17	A	G	4: 156,315,082 (GRCm39)	V525A	probably benign	Het
Lrrn1	G	T	6: 107,546,168 (GRCm39)	R655S	possibly damaging	Het
Mill2	G	A	7: 18,590,591 (GRCm39)	G209S	probably benign	Het
Mmp27	A	T	9: 7,581,369 (GRCm39)	H544L	probably benign	Het
Mphosph10	A	G	7: 64,039,344 (GRCm39)	S209P	probably damaging	Het
Mphosph8	A	T	14: 56,914,003 (GRCm39)	K415*	probably null	Het
Myb	T	A	10: 21,002,137 (GRCm39)	M616L	probably benign	Het
Myo15b	C	T	11: 115,776,880 (GRCm39)	R867W	probably damaging	Het
Myo18b	A	T	5: 113,022,346 (GRCm39)		probably benign	Het
Nip7	A	G	8: 107,783,589 (GRCm39)	E8G	possibly damaging	Het
Optn	T	A	2: 5,050,917 (GRCm39)	I155F	probably benign	Het
Or2f1b	T	A	6: 42,739,931 (GRCm39)	L315*	probably null	Het
Or4f62	A	T	2: 111,986,631 (GRCm39)	M112L	possibly damaging	Het
Or52e4	A	G	7: 104,705,689 (GRCm39)	T79A	possibly damaging	Het
Or5c1	T	G	2: 37,222,601 (GRCm39)	F281V	probably damaging	Het
Or6b6	T	C	7: 106,571,438 (GRCm39)	I38V	probably benign	Het
Papolb	A	T	5: 142,514,592 (GRCm39)	H350Q	probably benign	Het
Pappa2	T	A	1: 158,666,197 (GRCm39)	M1128L	probably benign	Het
Pcdhb5	T	A	18: 37,454,170 (GRCm39)	N183K	probably benign	Het
Pde12	G	T	14: 26,390,577 (GRCm39)	S44*	probably null	Het
Peg3	T	C	7: 6,713,288 (GRCm39)	K645E	probably benign	Het
Pkd1	C	T	17: 24,792,437 (GRCm39)	R1375C	probably benign	Het
Plekha5	G	A	6: 140,525,200 (GRCm39)	E21K	probably damaging	Het
Plk2	C	T	13: 110,535,958 (GRCm39)	P554L	probably benign	Het
Pnkp	C	T	7: 44,511,827 (GRCm39)	S113L	probably damaging	Het
Polg	A	T	7: 79,114,353 (GRCm39)	W203R	probably damaging	Het
Ppcdc	A	G	9: 57,328,446 (GRCm39)	V65A	possibly damaging	Het
Ppm1m	T	A	9: 106,073,004 (GRCm39)	Q353L	probably benign	Het
Ppp1r13l	G	C	7: 19,104,020 (GRCm39)	R167P	probably damaging	Het
Ppp1r9b	T	A	11: 94,887,479 (GRCm39)	V497E	probably damaging	Het
Prpf6	T	A	2: 181,277,836 (GRCm39)	H399Q	probably benign	Het
Psg25	T	A	7: 18,260,461 (GRCm39)	I146F	possibly damaging	Het
Rasgef1c	A	T	11: 49,851,256 (GRCm39)	Q116L	probably damaging	Het
Rbbp9	A	G	2: 144,392,676 (GRCm39)	V8A	possibly damaging	Het
Rfk	T	C	19: 17,376,930 (GRCm39)	F144S	probably damaging	Het
Rfwd3	A	C	8: 112,009,385 (GRCm39)		probably null	Het
Rhpn1	T	C	15: 75,581,109 (GRCm39)	I117T	probably damaging	Het
Sars2	A	T	7: 28,447,333 (GRCm39)	N244Y	probably damaging	Het
Scnn1b	A	T	7: 121,502,110 (GRCm39)	H256L	probably benign	Het
Sgcz	G	A	8: 38,006,821 (GRCm39)	T195I	probably damaging	Het
Sh3gl2	T	A	4: 85,297,494 (GRCm39)	H157Q	probably benign	Het
Spen	T	A	4: 141,203,410 (GRCm39)	Q1739L	probably benign	Het
Susd1	G	T	4: 59,379,657 (GRCm39)	S323R	possibly damaging	Het
Szt2	T	C	4: 118,242,641 (GRCm39)	E1482G	possibly damaging	Het
Tex15	A	T	8: 34,061,794 (GRCm39)	K408I	probably damaging	Het
Trem1	T	A	17: 48,539,864 (GRCm39)	F14L	probably null	Het
Trim26	G	T	17: 37,161,958 (GRCm39)	E126*	probably null	Het
Trpv3	T	C	11: 73,168,660 (GRCm39)		probably null	Het
Ttn	T	A	2: 76,746,835 (GRCm39)		probably null	Het
Ubap1	C	T	4: 41,379,688 (GRCm39)	L301F	probably benign	Het
Uchl1	T	C	5: 66,833,780 (GRCm39)	M12T	probably benign	Het
Vill	C	T	9: 118,899,093 (GRCm39)	T253I	possibly damaging	Het
Vmn2r107	C	T	17: 20,576,015 (GRCm39)	T115I	probably benign	Het
Vmn2r98	T	C	17: 19,273,815 (GRCm39)	S21P	probably benign	Het
Wapl	A	G	14: 34,399,119 (GRCm39)	K63E	probably benign	Het
Wnt2	T	C	6: 18,023,125 (GRCm39)	K175E	possibly damaging	Het
Zfp592	T	C	7: 80,673,309 (GRCm39)	L91P	probably damaging	Het
Zfp74	T	C	7: 29,631,932 (GRCm39)		probably null	Het
Zglp1	A	T	9: 20,973,957 (GRCm39)	I243N	probably benign	Het
Zranb1	A	G	7: 132,551,916 (GRCm39)	E215G	probably benign	Het

Other mutations in Ltk

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00832:Ltk	APN	2	119,586,086 (GRCm39)	splice site	probably benign
IGL01287:Ltk	APN	2	119,586,186 (GRCm39)	missense	probably benign	0.26
IGL01339:Ltk	APN	2	119,583,455 (GRCm39)	missense	probably damaging	1.00
IGL01614:Ltk	APN	2	119,583,968 (GRCm39)	missense	probably damaging	1.00
IGL01827:Ltk	APN	2	119,583,219 (GRCm39)	missense	probably damaging	1.00
IGL02229:Ltk	APN	2	119,589,054 (GRCm39)	missense	probably benign	0.01
Envy	UTSW	2	119,583,516 (GRCm39)	splice site	probably null
R2105:Ltk	UTSW	2	119,582,569 (GRCm39)	missense	probably damaging	1.00
R3763:Ltk	UTSW	2	119,582,318 (GRCm39)	missense	probably benign	0.01
R4119:Ltk	UTSW	2	119,588,429 (GRCm39)	intron	probably benign
R4120:Ltk	UTSW	2	119,588,429 (GRCm39)	intron	probably benign
R4257:Ltk	UTSW	2	119,583,485 (GRCm39)	missense	possibly damaging	0.52
R4460:Ltk	UTSW	2	119,586,094 (GRCm39)	critical splice donor site	probably null
R4888:Ltk	UTSW	2	119,583,708 (GRCm39)	missense	probably damaging	1.00
R5696:Ltk	UTSW	2	119,590,080 (GRCm39)	missense	probably benign	0.00
R5784:Ltk	UTSW	2	119,584,840 (GRCm39)	nonsense	probably null
R6301:Ltk	UTSW	2	119,582,238 (GRCm39)	missense	probably damaging	1.00
R6470:Ltk	UTSW	2	119,583,516 (GRCm39)	splice site	probably null
R6860:Ltk	UTSW	2	119,585,075 (GRCm39)	nonsense	probably null
R7083:Ltk	UTSW	2	119,582,555 (GRCm39)	missense	probably damaging	1.00
R8537:Ltk	UTSW	2	119,588,588 (GRCm39)	missense	probably benign	0.10
R8861:Ltk	UTSW	2	119,590,094 (GRCm39)	missense	probably benign	0.00
R9266:Ltk	UTSW	2	119,585,121 (GRCm39)	missense	possibly damaging	0.83
R9299:Ltk	UTSW	2	119,584,721 (GRCm39)	missense	possibly damaging	0.50
R9319:Ltk	UTSW	2	119,590,096 (GRCm39)	missense	probably benign
R9662:Ltk	UTSW	2	119,582,330 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GCAGAAGGTACATCATTTCATCC -3'
(R):5'- TCTGATCATCAGGTGCAGCC -3'

Sequencing Primer
(F):5'- GGTACATCATTTCATCCAGATCG -3'
(R):5'- ATCAGGTGCAGCCCAGGG -3'

Posted On

2016-06-15