Mutagenetix > Incidental Mutation

Incidental Mutation 'R5038:Tdh'

393128

Institutional Source

Beutler Lab

Gene Symbol

Tdh

Ensembl Gene

ENSMUSG00000021953

Gene Name

L-threonine dehydrogenase

Synonyms

MMRRC Submission

042628-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.162) question?

Stock #

R5038 (G1)

Quality Score

141

Status

Validated

Chromosome

Chromosomal Location

63729796-63746541 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 63733575 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 89 (Y89*)

Ref Sequence

ENSEMBL: ENSMUSP00000132119 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022522] [ENSMUST00000165776] [ENSMUST00000168488] [ENSMUST00000168669]

AlphaFold

Q8K3F7

Predicted Effect

probably null
Transcript: ENSMUST00000022522
AA Change: Y104*

SMART Domains

Protein: ENSMUSP00000022522
Gene: ENSMUSG00000021953
AA Change: Y104*

Domain	Start	End	E-Value	Type
Pfam:RmlD_sub_bind	56	252	3.3e-10	PFAM
Pfam:Epimerase	58	294	5.8e-22	PFAM
Pfam:3Beta_HSD	59	185	7e-9	PFAM
Pfam:GDP_Man_Dehyd	59	359	1.4e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000164515

Predicted Effect

probably benign
Transcript: ENSMUST00000165776

SMART Domains

Protein: ENSMUSP00000129206
Gene: ENSMUSG00000021953

Domain	Start	End	E-Value	Type
SCOP:d1kc0a_	42	149	3e-11	SMART
PDB:3A4V\|B	43	144	3e-18	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000168488

SMART Domains

Protein: ENSMUSP00000131068
Gene: ENSMUSG00000021953

Domain	Start	End	E-Value	Type
SCOP:d1kc0a_	42	140	5e-11	SMART
PDB:3A4V\|B	43	148	1e-18	PDB

Predicted Effect

probably null
Transcript: ENSMUST00000168669
AA Change: Y89*

SMART Domains

Protein: ENSMUSP00000132119
Gene: ENSMUSG00000021953
AA Change: Y89*

Domain	Start	End	E-Value	Type
Pfam:RmlD_sub_bind	41	205	6.9e-10	PFAM
Pfam:Polysacc_synt_2	43	164	2.2e-6	PFAM
Pfam:Epimerase	43	200	9.2e-13	PFAM
Pfam:3Beta_HSD	44	168	5.1e-9	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000170772

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.5%

Validation Efficiency

94% (64/68)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930512M02Rik	A	T	11: 11,539,375 (GRCm39)		probably null	Het
Abtb2	G	T	2: 103,397,408 (GRCm39)	G113C	probably damaging	Het
Acsm5	A	G	7: 119,134,034 (GRCm39)	T272A	probably damaging	Het
Adprs	C	T	4: 126,211,102 (GRCm39)	E272K	possibly damaging	Het
Agbl5	G	A	5: 31,060,403 (GRCm39)	R141Q	probably damaging	Het
Atp7b	A	C	8: 22,518,472 (GRCm39)	I122S	possibly damaging	Het
B230219D22Rik	T	C	13: 55,847,288 (GRCm39)	Y134H	probably damaging	Het
Bnc1	A	G	7: 81,618,462 (GRCm39)	S868P	probably damaging	Het
Camta1	T	C	4: 151,229,926 (GRCm39)	E302G	probably damaging	Het
Car1	A	G	3: 14,835,933 (GRCm39)	Y129H	probably damaging	Het
Cdh22	T	C	2: 164,984,197 (GRCm39)	T352A	probably benign	Het
Ckmt2	T	C	13: 92,009,282 (GRCm39)	E215G	probably benign	Het
Cyb5r4	T	G	9: 86,941,130 (GRCm39)		probably null	Het
Dhrs13	A	G	11: 77,923,256 (GRCm39)		probably benign	Het
Dsg1c	G	A	18: 20,397,901 (GRCm39)	A34T	probably benign	Het
Epb41l1	T	C	2: 156,363,330 (GRCm39)	V613A	probably benign	Het
Fam114a1	A	G	5: 65,166,388 (GRCm39)	M240V	probably damaging	Het
Gm15455	T	C	1: 33,877,257 (GRCm39)		noncoding transcript	Het
Herc1	T	G	9: 66,383,742 (GRCm39)		probably benign	Het
Ifna11	T	C	4: 88,738,314 (GRCm39)	V40A	probably benign	Het
Ifna15	T	C	4: 88,476,266 (GRCm39)	N73D	probably benign	Het
Imp4	A	T	1: 34,482,016 (GRCm39)	L45F	probably damaging	Het
Jak3	G	A	8: 72,138,702 (GRCm39)	A967T	probably damaging	Het
Krtap19-2	A	T	16: 88,670,916 (GRCm39)	Y76*	probably null	Het
Map4k5	A	T	12: 69,871,388 (GRCm39)	N492K	probably damaging	Het
Mycbp2	C	T	14: 103,534,375 (GRCm39)	R372H	probably damaging	Het
Nos2	G	A	11: 78,813,140 (GRCm39)	S16N	probably benign	Het
Nr2c2	A	G	6: 92,116,803 (GRCm39)	T2A	probably damaging	Het
Nup188	T	C	2: 30,199,232 (GRCm39)	Y267H	probably damaging	Het
Nxph2	G	A	2: 23,211,556 (GRCm39)		probably null	Het
Or5b107	T	A	19: 13,142,955 (GRCm39)	D192E	probably benign	Het
Or5b96	T	A	19: 12,867,770 (GRCm39)	H57L	probably damaging	Het
Or9i1b	T	A	19: 13,896,822 (GRCm39)	V146E	possibly damaging	Het
Otof	C	T	5: 30,541,783 (GRCm39)	E761K	possibly damaging	Het
Pik3r1	C	T	13: 101,825,952 (GRCm39)	R37Q	probably damaging	Het
Pkn3	T	C	2: 29,975,293 (GRCm39)		probably null	Het
Pold3	A	G	7: 99,770,590 (GRCm39)	V14A	probably damaging	Het
Ptpn14	T	C	1: 189,519,083 (GRCm39)	S38P	probably damaging	Het
Raf1	G	A	6: 115,597,196 (GRCm39)	Q35*	probably null	Het
Rps3a1	C	A	3: 86,045,338 (GRCm39)	E251D	probably benign	Het
Scd1	C	T	19: 44,390,148 (GRCm39)	V207M	probably damaging	Het
Shq1	A	G	6: 100,607,954 (GRCm39)	V319A	probably benign	Het
Slc4a8	T	C	15: 100,693,702 (GRCm39)	Y416H	probably damaging	Het
Slco1a5	T	C	6: 142,208,363 (GRCm39)	T143A	probably benign	Het
Slco1a5	C	T	6: 142,212,090 (GRCm39)	G90D	probably damaging	Het
Snx9	T	C	17: 5,937,348 (GRCm39)	V30A	probably benign	Het
Spdya	T	C	17: 71,895,561 (GRCm39)		probably benign	Het
Stat1	A	T	1: 52,162,368 (GRCm39)	N75I	probably damaging	Het
Sv2b	A	T	7: 74,807,173 (GRCm39)	M159K	probably damaging	Het
Tmc7	A	G	7: 118,142,588 (GRCm39)	F600S	probably damaging	Het
Trpa1	T	A	1: 14,981,090 (GRCm39)	H104L	probably damaging	Het
Ttn	G	A	2: 76,678,984 (GRCm39)		probably benign	Het
Vmn1r113	A	G	7: 20,521,419 (GRCm39)	I70M	possibly damaging	Het
Vmn1r171	A	G	7: 23,332,188 (GRCm39)	M138V	probably benign	Het
Zfc3h1	G	A	10: 115,240,116 (GRCm39)	V550I	probably benign	Het
Zfp335	G	T	2: 164,752,564 (GRCm39)	S60*	probably null	Het
Zfp7	T	C	15: 76,776,010 (GRCm39)	M684T	probably benign	Het
Zfp984	T	A	4: 147,839,903 (GRCm39)	H316L	probably damaging	Het
Zmym2	T	A	14: 57,193,637 (GRCm39)	Y1151N	possibly damaging	Het

Other mutations in Tdh

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00843:Tdh	APN	14	63,733,213 (GRCm39)	missense	probably damaging	1.00
IGL02047:Tdh	APN	14	63,734,407 (GRCm39)	missense	probably benign	0.07
R0126:Tdh	UTSW	14	63,735,042 (GRCm39)	splice site	probably benign
R1530:Tdh	UTSW	14	63,733,504 (GRCm39)	missense	probably damaging	1.00
R3748:Tdh	UTSW	14	63,733,442 (GRCm39)	missense	probably benign	0.26
R4589:Tdh	UTSW	14	63,733,326 (GRCm39)	missense	probably damaging	1.00
R4646:Tdh	UTSW	14	63,731,205 (GRCm39)	missense	possibly damaging	0.51
R4647:Tdh	UTSW	14	63,731,205 (GRCm39)	missense	possibly damaging	0.51
R4648:Tdh	UTSW	14	63,731,205 (GRCm39)	missense	possibly damaging	0.51
R5275:Tdh	UTSW	14	63,733,558 (GRCm39)	missense	probably damaging	1.00
R5295:Tdh	UTSW	14	63,733,558 (GRCm39)	missense	probably damaging	1.00
R6319:Tdh	UTSW	14	63,733,186 (GRCm39)	missense	probably benign	0.00
R6825:Tdh	UTSW	14	63,733,281 (GRCm39)	missense	probably damaging	0.99
R7218:Tdh	UTSW	14	63,733,206 (GRCm39)	missense	probably damaging	1.00
R7528:Tdh	UTSW	14	63,731,460 (GRCm39)	missense	probably damaging	1.00
R7732:Tdh	UTSW	14	63,733,507 (GRCm39)	missense	probably damaging	1.00
R8238:Tdh	UTSW	14	63,733,173 (GRCm39)	missense	probably damaging	1.00
R8492:Tdh	UTSW	14	63,730,269 (GRCm39)	missense	probably damaging	1.00
R9010:Tdh	UTSW	14	63,737,704 (GRCm39)	missense	probably benign	0.00
R9043:Tdh	UTSW	14	63,730,278 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TTACCAAGAGCCGGAACAACTG -3'
(R):5'- TGTTAACCCAGTGCTCAGAAG -3'

Sequencing Primer
(F):5'- AACTGGCCCCCACTGAG -3'
(R):5'- TTAACCCAGTGCTCAGAAGGCTAG -3'

Posted On

2016-06-15