Mutagenetix > Incidental Mutation

Incidental Mutation 'R5109:Sec16b'

393712

Institutional Source

Beutler Lab

Gene Symbol

Sec16b

Ensembl Gene

ENSMUSG00000026589

Gene Name

SEC16 homolog B, endoplasmic reticulum export factor

Synonyms

Lztr2, Rgpr, Rgpr-p117

MMRRC Submission

042697-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5109 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

157334303-157395995 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 157392361 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 910 (R910*)

Ref Sequence

ENSEMBL: ENSMUSP00000107329 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027881] [ENSMUST00000086130] [ENSMUST00000111700] [ENSMUST00000146873]

AlphaFold

Q91XT4

Predicted Effect

probably null
Transcript: ENSMUST00000027881
AA Change: R910*

SMART Domains

Protein: ENSMUSP00000027881
Gene: ENSMUSG00000026589
AA Change: R910*

Domain	Start	End	E-Value	Type
low complexity region	212	232	N/A	INTRINSIC
Pfam:Sec16	270	371	1.7e-19	PFAM
Pfam:Sec16_C	436	681	1e-38	PFAM
low complexity region	795	810	N/A	INTRINSIC
low complexity region	858	876	N/A	INTRINSIC
low complexity region	900	909	N/A	INTRINSIC
low complexity region	915	963	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000086130
AA Change: R910*

SMART Domains

Protein: ENSMUSP00000083300
Gene: ENSMUSG00000026589
AA Change: R910*

Domain	Start	End	E-Value	Type
low complexity region	212	232	N/A	INTRINSIC
Pfam:Sec16	271	370	4.8e-8	PFAM
Pfam:Sec16_C	437	677	2.2e-45	PFAM
low complexity region	795	810	N/A	INTRINSIC
low complexity region	858	876	N/A	INTRINSIC
low complexity region	900	909	N/A	INTRINSIC
low complexity region	915	963	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000111700
AA Change: R910*

SMART Domains

Protein: ENSMUSP00000107329
Gene: ENSMUSG00000026589
AA Change: R910*

Domain	Start	End	E-Value	Type
low complexity region	212	232	N/A	INTRINSIC
Pfam:Sec16	270	371	1.7e-19	PFAM
Pfam:Sec16_C	436	681	1e-38	PFAM
low complexity region	795	810	N/A	INTRINSIC
low complexity region	858	876	N/A	INTRINSIC
low complexity region	900	909	N/A	INTRINSIC
low complexity region	915	963	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000146873

SMART Domains

Protein: ENSMUSP00000119359
Gene: ENSMUSG00000026589

Domain	Start	End	E-Value	Type
low complexity region	23	43	N/A	INTRINSIC
Pfam:Sec16	81	182	9.4e-20	PFAM
Pfam:Sec16_C	247	492	4.8e-39	PFAM
low complexity region	606	621	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 95.9%
20x: 91.2%

Validation Efficiency

95% (78/82)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SEC16B is a mammalian homolog of S. cerevisiae Sec16 that is required for organization of transitional endoplasmic reticulum (ER) sites and protein export (Bhattacharyya and Glick, 2007 [PubMed 17192411]).[supplied by OMIM, Jun 2009]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ankrd17	T	C	5: 90,391,395 (GRCm39)	S1841G	possibly damaging	Het
Anxa10	T	C	8: 62,516,093 (GRCm39)	E193G	possibly damaging	Het
Ap3d1	T	C	10: 80,545,284 (GRCm39)	S1056G	probably benign	Het
Apbb1	T	C	7: 105,214,242 (GRCm39)	N62D	probably damaging	Het
Apobec2	A	T	17: 48,730,022 (GRCm39)	Y215N	probably damaging	Het
Apobec2	T	A	17: 48,730,024 (GRCm39)	Y214F	probably damaging	Het
Appl2	A	T	10: 83,436,871 (GRCm39)	V630E	probably benign	Het
Bud23	T	C	5: 135,089,877 (GRCm39)		probably benign	Het
Cacna1b	A	T	2: 24,580,797 (GRCm39)	M683K	possibly damaging	Het
Cbfa2t2	T	A	2: 154,373,293 (GRCm39)	D187E	probably damaging	Het
Cfap54	G	T	10: 92,773,753 (GRCm39)	F96L	probably benign	Het
Cimap1a	A	T	7: 140,429,461 (GRCm39)	S197C	probably benign	Het
Crebbp	A	G	16: 3,906,295 (GRCm39)		probably benign	Het
Crocc	C	T	4: 140,755,722 (GRCm39)	R1102Q	probably damaging	Het
Dcaf12	T	C	4: 41,298,329 (GRCm39)	D273G	possibly damaging	Het
Dchs1	T	C	7: 105,414,221 (GRCm39)	T865A	probably benign	Het
Dhfr	A	T	13: 92,491,788 (GRCm39)	I8F	probably damaging	Het
Dnaja2	A	T	8: 86,279,887 (GRCm39)	F97L	possibly damaging	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Het
Doc2b	T	C	11: 75,667,967 (GRCm39)	D261G	probably benign	Het
Ear1	A	G	14: 44,056,485 (GRCm39)	Y128H	probably benign	Het
Elac2	T	A	11: 64,883,142 (GRCm39)	I171N	probably damaging	Het
Entpd3	C	A	9: 120,395,380 (GRCm39)	N454K	possibly damaging	Het
Flrt3	A	G	2: 140,502,663 (GRCm39)	S322P	possibly damaging	Het
Fn1	C	T	1: 71,688,394 (GRCm39)	C170Y	probably damaging	Het
Gabbr1	T	A	17: 37,382,920 (GRCm39)		probably benign	Het
Gm7247	T	G	14: 51,602,774 (GRCm39)	S37A	probably damaging	Het
Gm8775	T	A	3: 4,277,008 (GRCm39)		noncoding transcript	Het
Gprc5c	G	T	11: 114,755,093 (GRCm39)	V257L	possibly damaging	Het
Gria4	A	C	9: 4,472,168 (GRCm39)	N440K	probably damaging	Het
H2-T22	T	A	17: 36,350,113 (GRCm39)	R334*	probably null	Het
Ift172	T	C	5: 31,423,330 (GRCm39)	D817G	probably benign	Het
Igkv9-124	T	A	6: 67,919,348 (GRCm39)	R21S	possibly damaging	Het
Itgam	G	A	7: 127,712,390 (GRCm39)	V846I	probably benign	Het
Kif11	T	A	19: 37,373,063 (GRCm39)	M94K	possibly damaging	Het
Krtcap2	T	C	3: 89,154,085 (GRCm39)	V2A	probably benign	Het
Lrrc47	A	G	4: 154,101,933 (GRCm39)	D400G	probably damaging	Het
Man2a1	T	A	17: 65,059,443 (GRCm39)	V1110E	probably benign	Het
Mfsd9	T	A	1: 40,813,365 (GRCm39)	I317F	probably damaging	Het
Mindy4	A	T	6: 55,193,730 (GRCm39)		probably null	Het
Mrpl53	A	G	6: 83,086,541 (GRCm39)	T82A	probably damaging	Het
Myo3b	A	G	2: 69,925,637 (GRCm39)	K35E	possibly damaging	Het
Nalcn	A	G	14: 123,515,650 (GRCm39)	V1717A	possibly damaging	Het
Ncoa2	A	G	1: 13,257,070 (GRCm39)	V143A	probably damaging	Het
Ndufa9	A	C	6: 126,809,520 (GRCm39)		probably null	Het
Or10ag60	G	A	2: 87,438,319 (GRCm39)	G196R	possibly damaging	Het
Or10ag60	G	A	2: 87,437,755 (GRCm39)	A8T	possibly damaging	Het
Or12e9	A	G	2: 87,201,878 (GRCm39)	M1V	probably null	Het
Or5k17	A	G	16: 58,746,422 (GRCm39)	S171P	probably benign	Het
Or5p55	T	C	7: 107,567,104 (GRCm39)	S167P	probably benign	Het
Or6c202	T	C	10: 128,996,106 (GRCm39)	Y249C	probably damaging	Het
Or7g28	A	T	9: 19,272,438 (GRCm39)	I71N	probably damaging	Het
Or9g8	G	A	2: 85,607,668 (GRCm39)	V247M	probably damaging	Het
Pde4b	G	T	4: 102,458,741 (GRCm39)	A466S	probably damaging	Het
Pfkfb3	A	T	2: 11,491,162 (GRCm39)		probably benign	Het
Ppp1r21	A	G	17: 88,866,268 (GRCm39)	K355E	probably damaging	Het
Psme4	T	A	11: 30,741,095 (GRCm39)	Y90*	probably null	Het
Rbms1	G	A	2: 60,612,284 (GRCm39)	L161F	probably damaging	Het
Rdh16f2	A	G	10: 127,702,672 (GRCm39)	D83G	probably damaging	Het
Sema4c	CTGGGCTT	C	1: 36,591,381 (GRCm39)		probably null	Het
Spata31e5	T	C	1: 28,816,636 (GRCm39)	I465M	possibly damaging	Het
Stambp	A	G	6: 83,540,803 (GRCm39)		probably null	Het
Tcf21	T	C	10: 22,695,558 (GRCm39)	N82S	probably damaging	Het
Tlr2	A	T	3: 83,745,030 (GRCm39)	V351D	probably damaging	Het
Tmem39a	G	A	16: 38,411,326 (GRCm39)	G359D	probably damaging	Het
Ttc23l	G	T	15: 10,551,636 (GRCm39)	T30K	possibly damaging	Het
Vmn2r17	C	A	5: 109,577,342 (GRCm39)	F464L	probably benign	Het
Vmn2r49	T	A	7: 9,710,204 (GRCm39)	T843S	probably benign	Het
Vmn2r7	T	C	3: 64,598,088 (GRCm39)	D823G	probably null	Het
Wrnip1	T	A	13: 33,000,319 (GRCm39)	L442Q	probably damaging	Het
Zbtb38	G	T	9: 96,569,062 (GRCm39)	S674Y	probably damaging	Het
Zfp639	T	G	3: 32,574,585 (GRCm39)		probably null	Het

Other mutations in Sec16b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00226:Sec16b	APN	1	157,365,900 (GRCm39)	missense	probably damaging	1.00
IGL00645:Sec16b	APN	1	157,394,289 (GRCm39)	missense	probably damaging	1.00
IGL00763:Sec16b	APN	1	157,356,827 (GRCm39)	missense	probably benign	0.00
IGL00822:Sec16b	APN	1	157,392,125 (GRCm39)	missense	probably benign	0.05
IGL02225:Sec16b	APN	1	157,359,614 (GRCm39)	unclassified	probably benign
IGL02746:Sec16b	APN	1	157,373,859 (GRCm39)	splice site	probably benign
IGL03031:Sec16b	APN	1	157,388,369 (GRCm39)	missense	probably benign
IGL03117:Sec16b	APN	1	157,362,970 (GRCm39)	missense	probably damaging	1.00
IGL03193:Sec16b	APN	1	157,362,963 (GRCm39)	missense	probably benign	0.01
R0206:Sec16b	UTSW	1	157,380,505 (GRCm39)	nonsense	probably null
R0208:Sec16b	UTSW	1	157,380,505 (GRCm39)	nonsense	probably null
R0349:Sec16b	UTSW	1	157,359,746 (GRCm39)	splice site	probably null
R0433:Sec16b	UTSW	1	157,362,279 (GRCm39)	nonsense	probably null
R0537:Sec16b	UTSW	1	157,365,116 (GRCm39)	missense	possibly damaging	0.91
R0593:Sec16b	UTSW	1	157,359,718 (GRCm39)	missense	probably benign	0.03
R0629:Sec16b	UTSW	1	157,392,433 (GRCm39)	unclassified	probably benign
R1028:Sec16b	UTSW	1	157,388,487 (GRCm39)	missense	probably benign	0.03
R1119:Sec16b	UTSW	1	157,392,404 (GRCm39)	missense	possibly damaging	0.93
R1835:Sec16b	UTSW	1	157,358,882 (GRCm39)	missense	probably benign	0.00
R1894:Sec16b	UTSW	1	157,380,545 (GRCm39)	missense	possibly damaging	0.90
R2307:Sec16b	UTSW	1	157,363,062 (GRCm39)	missense	probably damaging	1.00
R3438:Sec16b	UTSW	1	157,384,328 (GRCm39)	splice site	probably benign
R4788:Sec16b	UTSW	1	157,389,094 (GRCm39)	missense	possibly damaging	0.77
R5235:Sec16b	UTSW	1	157,362,334 (GRCm39)	missense	probably benign	0.00
R5942:Sec16b	UTSW	1	157,358,920 (GRCm39)	missense	probably damaging	1.00
R6034:Sec16b	UTSW	1	157,380,509 (GRCm39)	missense	probably damaging	1.00
R6034:Sec16b	UTSW	1	157,380,509 (GRCm39)	missense	probably damaging	1.00
R6081:Sec16b	UTSW	1	157,388,324 (GRCm39)	missense	probably benign
R7026:Sec16b	UTSW	1	157,362,281 (GRCm39)	missense	possibly damaging	0.80
R7192:Sec16b	UTSW	1	157,357,013 (GRCm39)	missense	probably benign	0.00
R7270:Sec16b	UTSW	1	157,392,033 (GRCm39)	missense	probably damaging	1.00
R7270:Sec16b	UTSW	1	157,392,032 (GRCm39)	missense	probably damaging	1.00
R7404:Sec16b	UTSW	1	157,358,927 (GRCm39)	missense	probably damaging	1.00
R7494:Sec16b	UTSW	1	157,388,369 (GRCm39)	missense	probably benign
R7570:Sec16b	UTSW	1	157,358,965 (GRCm39)	splice site	probably null
R7747:Sec16b	UTSW	1	157,393,042 (GRCm39)	missense	possibly damaging	0.69
R7751:Sec16b	UTSW	1	157,385,630 (GRCm39)	missense	probably damaging	1.00
R7797:Sec16b	UTSW	1	157,389,245 (GRCm39)	missense	unknown
R7913:Sec16b	UTSW	1	157,356,899 (GRCm39)	missense	probably benign	0.00
R7943:Sec16b	UTSW	1	157,382,327 (GRCm39)	missense	probably benign
R8176:Sec16b	UTSW	1	157,362,981 (GRCm39)	missense	probably damaging	1.00
R8891:Sec16b	UTSW	1	157,382,409 (GRCm39)	missense	probably damaging	1.00
R9080:Sec16b	UTSW	1	157,393,300 (GRCm39)	missense	probably benign	0.09
R9263:Sec16b	UTSW	1	157,359,748 (GRCm39)	unclassified	probably benign
R9290:Sec16b	UTSW	1	157,373,816 (GRCm39)	missense	probably damaging	1.00
R9388:Sec16b	UTSW	1	157,388,393 (GRCm39)	missense	probably benign	0.01
R9430:Sec16b	UTSW	1	157,394,894 (GRCm39)	missense	probably damaging	1.00
R9522:Sec16b	UTSW	1	157,392,335 (GRCm39)	missense	probably damaging	1.00
R9706:Sec16b	UTSW	1	157,378,695 (GRCm39)	critical splice donor site	probably null
Z1088:Sec16b	UTSW	1	157,385,594 (GRCm39)	splice site	probably null
Z1176:Sec16b	UTSW	1	157,378,639 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGCTTCACAGAAAGGAAAGCTG -3'
(R):5'- CTTCAGGCCATGATAGAGCG -3'

Sequencing Primer
(F):5'- CAAAGGTGGAGAACTTGTTCTC -3'
(R):5'- GTGACGCCAAGCCTGTGTTG -3'

Posted On

2016-06-15