Mutagenetix > Incidental Mutation

Incidental Mutation 'R5162:2010315B03Rik'

397063

Institutional Source

Beutler Lab

Gene Symbol

2010315B03Rik

Ensembl Gene

ENSMUSG00000074829

Gene Name

RIKEN cDNA 2010315B03 gene

Synonyms

MMRRC Submission

042744-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.065) question?

Stock #

R5162 (G1)

Quality Score

108

Status

Validated

Chromosome

Chromosomal Location

124054434-124075326 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 124056301 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 229 (T229S)

Ref Sequence

ENSEMBL: ENSMUSP00000071269 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071300] [ENSMUST00000177714] [ENSMUST00000185949] [ENSMUST00000189915]

AlphaFold

J3QK55

Predicted Effect

probably benign
Transcript: ENSMUST00000071300
AA Change: T229S

PolyPhen 2 Score 0.082 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000071269
Gene: ENSMUSG00000074829
AA Change: T229S

Domain	Start	End	E-Value	Type
KRAB	24	86	5.28e-14	SMART
ZnF_C2H2	95	117	5.9e-3	SMART
ZnF_C2H2	123	145	1.26e-2	SMART
ZnF_C2H2	151	173	2.95e-3	SMART
ZnF_C2H2	179	201	4.24e-4	SMART
ZnF_C2H2	207	229	1.38e-3	SMART
ZnF_C2H2	235	257	3.21e-4	SMART
ZnF_C2H2	263	285	1.26e-2	SMART
ZnF_C2H2	291	312	6.08e0	SMART
ZnF_C2H2	318	340	8.6e-5	SMART
ZnF_C2H2	346	368	1.36e-2	SMART
ZnF_C2H2	374	396	8.02e-5	SMART
ZnF_C2H2	402	424	9.58e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000177714
AA Change: T208S

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000137258
Gene: ENSMUSG00000074829
AA Change: T208S

Domain	Start	End	E-Value	Type
KRAB	28	90	5.28e-14	SMART
ZnF_C2H2	99	121	5.9e-3	SMART
ZnF_C2H2	127	149	1.26e-2	SMART
ZnF_C2H2	155	177	2.95e-3	SMART
ZnF_C2H2	183	205	4.24e-4	SMART
ZnF_C2H2	211	233	1.38e-3	SMART
ZnF_C2H2	239	261	3.21e-4	SMART
ZnF_C2H2	267	289	1.26e-2	SMART
ZnF_C2H2	295	316	6.08e0	SMART
ZnF_C2H2	322	344	8.6e-5	SMART
ZnF_C2H2	350	372	1.36e-2	SMART
ZnF_C2H2	378	400	8.02e-5	SMART
ZnF_C2H2	406	428	9.58e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000185949

SMART Domains

Protein: ENSMUSP00000140144
Gene: ENSMUSG00000074829

Domain	Start	End	E-Value	Type
KRAB	29	91	2.3e-16	SMART
ZnF_C2H2	100	122	2.5e-5	SMART
ZnF_C2H2	128	150	5.3e-5	SMART
ZnF_C2H2	156	175	5.1e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000189915

SMART Domains

Protein: ENSMUSP00000140738
Gene: ENSMUSG00000074829

Domain	Start	End	E-Value	Type
KRAB	1	63	2.3e-16	SMART
ZnF_C2H2	72	94	2.5e-5	SMART
ZnF_C2H2	100	122	5.3e-5	SMART
ZnF_C2H2	128	150	1.2e-5	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 94.8%

Validation Efficiency

98% (61/62)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adrb3	T	C	8: 27,717,348 (GRCm39)	E367G	probably benign	Het
Ak9	T	A	10: 41,233,653 (GRCm39)	N630K	probably damaging	Het
Atp8b1	T	C	18: 64,694,733 (GRCm39)	I516M	possibly damaging	Het
Bcor	C	T	X: 11,906,725 (GRCm39)	R1551Q	probably damaging	Het
Cry1	T	A	10: 84,969,150 (GRCm39)	H558L	probably benign	Het
Cstdc3	A	T	16: 36,132,918 (GRCm39)	H65L	probably damaging	Het
Cyp3a57	T	A	5: 145,305,893 (GRCm39)	W126R	probably damaging	Het
Dhx36	A	T	3: 62,401,201 (GRCm39)	V355E	probably damaging	Het
Dpp6	A	G	5: 27,604,013 (GRCm39)		probably benign	Het
Ehmt1	G	T	2: 24,767,509 (GRCm39)	P135T	probably damaging	Het
Enpp2	T	C	15: 54,710,692 (GRCm39)	D694G	probably benign	Het
Esrp2	T	C	8: 106,859,930 (GRCm39)	E336G	probably damaging	Het
Faah	A	T	4: 115,857,938 (GRCm39)		probably benign	Het
Fat1	G	A	8: 45,478,846 (GRCm39)	G2608R	probably benign	Het
Fbxo8	A	T	8: 57,022,354 (GRCm39)	Y122F	probably damaging	Het
Fgd5	A	G	6: 92,051,215 (GRCm39)	D1497G	probably damaging	Het
Fn3krp	T	C	11: 121,320,410 (GRCm39)	F252L	probably damaging	Het
Fnip2	T	C	3: 79,389,084 (GRCm39)	Y549C	probably damaging	Het
Gcm2	T	C	13: 41,257,131 (GRCm39)	N206S	probably benign	Het
Grn	C	A	11: 102,321,380 (GRCm39)		probably benign	Het
H2-T10	T	A	17: 36,429,843 (GRCm39)		probably null	Het
Henmt1	T	C	3: 108,847,366 (GRCm39)		probably null	Het
Man1b1	T	A	2: 25,233,365 (GRCm39)	L246Q	probably damaging	Het
Mdh2	T	C	5: 135,812,329 (GRCm39)		probably null	Het
Mocos	T	C	18: 24,787,109 (GRCm39)	F43L	probably damaging	Het
Msh2	C	A	17: 88,030,841 (GRCm39)	A906E	probably benign	Het
Naip5	T	A	13: 100,359,914 (GRCm39)	I441F	possibly damaging	Het
Naip6	C	T	13: 100,437,108 (GRCm39)	A472T	probably benign	Het
Nars2	T	C	7: 96,709,027 (GRCm39)		probably benign	Het
Ncoa2	A	T	1: 13,245,396 (GRCm39)	M434K	possibly damaging	Het
Nlrp4g	T	A	9: 124,350,394 (GRCm38)		noncoding transcript	Het
Or14j8	T	A	17: 38,263,255 (GRCm39)	Q220L	probably benign	Het
Or9a2	G	T	6: 41,748,706 (GRCm39)	H176N	possibly damaging	Het
Pals2	T	A	6: 50,155,495 (GRCm39)	W259R	probably damaging	Het
Pars2	A	G	4: 106,511,735 (GRCm39)	T506A	probably benign	Het
Pkp2	T	C	16: 16,078,200 (GRCm39)	S481P	probably damaging	Het
Plod3	T	C	5: 137,020,161 (GRCm39)	W459R	probably damaging	Het
Pramel13	A	T	4: 144,121,482 (GRCm39)	L181M	probably damaging	Het
Prdm10	A	T	9: 31,251,714 (GRCm39)	I361F	possibly damaging	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Raver2	T	C	4: 100,959,921 (GRCm39)	C134R	probably damaging	Het
Rnf130	G	C	11: 49,943,722 (GRCm39)	A123P	probably damaging	Het
Slc29a4	G	A	5: 142,707,207 (GRCm39)	A517T	possibly damaging	Het
Slc38a6	T	A	12: 73,376,759 (GRCm39)	S138T	possibly damaging	Het
Spred1	T	C	2: 117,008,102 (GRCm39)	V336A	possibly damaging	Het
Sptlc3	T	A	2: 139,473,263 (GRCm39)	M504K	probably benign	Het
Syt11	T	C	3: 88,655,149 (GRCm39)	D78G	probably damaging	Het
Trim23	C	T	13: 104,317,682 (GRCm39)	T61I	probably damaging	Het
Tsg101	T	C	7: 46,542,174 (GRCm39)	T260A	probably damaging	Het
Tyw5	T	C	1: 57,440,618 (GRCm39)	Y48C	probably damaging	Het
Utp25	G	T	1: 192,796,089 (GRCm39)	T192K	probably damaging	Het
Vmn1r17	A	G	6: 57,337,828 (GRCm39)	V130A	probably benign	Het
Vmn2r89	C	A	14: 51,693,620 (GRCm39)	H323Q	possibly damaging	Het
Vps18	A	G	2: 119,123,423 (GRCm39)	S117G	probably benign	Het
Zfp93	C	G	7: 23,975,757 (GRCm39)	Q581E	probably damaging	Het

Other mutations in 2010315B03Rik

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01872:2010315B03Rik	APN	9	124,058,120 (GRCm39)	splice site	probably benign
P4748:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0090:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0122:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0140:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0164:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0164:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0388:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0775:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R0798:2010315B03Rik	UTSW	9	124,057,789 (GRCm39)	critical splice acceptor site	probably benign
R1467:2010315B03Rik	UTSW	9	124,058,093 (GRCm39)	missense	possibly damaging	0.91
R1569:2010315B03Rik	UTSW	9	124,056,427 (GRCm39)	nonsense	probably null
R2566:2010315B03Rik	UTSW	9	124,055,783 (GRCm39)	missense	probably damaging	0.99
R2566:2010315B03Rik	UTSW	9	124,055,701 (GRCm39)	missense	probably damaging	0.97
R3853:2010315B03Rik	UTSW	9	124,055,976 (GRCm39)	missense	probably damaging	1.00
R4092:2010315B03Rik	UTSW	9	124,055,903 (GRCm39)	missense	probably benign	0.03
R4109:2010315B03Rik	UTSW	9	124,057,733 (GRCm39)	missense	probably benign	0.01
R4646:2010315B03Rik	UTSW	9	124,056,228 (GRCm39)	missense	probably benign	0.00
R4648:2010315B03Rik	UTSW	9	124,056,228 (GRCm39)	missense	probably benign	0.00
R4705:2010315B03Rik	UTSW	9	124,056,631 (GRCm39)	missense	possibly damaging	0.86
R4764:2010315B03Rik	UTSW	9	124,056,396 (GRCm39)	missense	probably benign	0.01
R5110:2010315B03Rik	UTSW	9	124,057,987 (GRCm39)	critical splice donor site	probably null
R5117:2010315B03Rik	UTSW	9	124,055,715 (GRCm39)	missense	probably benign	0.00
R5226:2010315B03Rik	UTSW	9	124,056,706 (GRCm39)	missense	possibly damaging	0.91
R5426:2010315B03Rik	UTSW	9	124,056,633 (GRCm39)	missense	probably damaging	1.00
R6793:2010315B03Rik	UTSW	9	124,058,052 (GRCm39)	missense	possibly damaging	0.85
R6975:2010315B03Rik	UTSW	9	124,056,687 (GRCm39)	missense	probably benign	0.02
R7213:2010315B03Rik	UTSW	9	124,056,530 (GRCm39)	nonsense	probably null
R8011:2010315B03Rik	UTSW	9	124,056,529 (GRCm39)	missense
R8086:2010315B03Rik	UTSW	9	124,055,808 (GRCm39)	missense
R8117:2010315B03Rik	UTSW	9	124,058,078 (GRCm39)	missense
R8363:2010315B03Rik	UTSW	9	124,055,800 (GRCm39)	missense
R8941:2010315B03Rik	UTSW	9	124,056,679 (GRCm39)	missense	probably benign	0.05
R9523:2010315B03Rik	UTSW	9	124,056,652 (GRCm39)	missense

Predicted Primers

PCR Primer
(F):5'- ATAGGCTTTGTCACACAGATTACATT -3'
(R):5'- TGCGGTACAGCCTTTGCAAG -3'

Sequencing Primer
(F):5'- GACTTGCAAAGGCTTTATCACAGTG -3'
(R):5'- GCAAGTCATTGTCGTCTTCAAAGG -3'

Posted On

2016-06-21