Mutagenetix > Incidental Mutation

Incidental Mutation 'R0453:Pld5'

39736

Institutional Source

Beutler Lab

Gene Symbol

Pld5

Ensembl Gene

ENSMUSG00000055214

Gene Name

phospholipase D family member 5

Synonyms

B230365F16Rik

MMRRC Submission

038653-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0453 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

175789872-176102878 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 175917522 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 75 (M75K)

Ref Sequence

ENSEMBL: ENSMUSP00000106797 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065967] [ENSMUST00000111167] [ENSMUST00000125404]

AlphaFold

Q3UNN8

Predicted Effect

probably benign
Transcript: ENSMUST00000065967
AA Change: M137K

PolyPhen 2 Score 0.407 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000069326
Gene: ENSMUSG00000055214
AA Change: M137K

Domain	Start	End	E-Value	Type
transmembrane domain	68	90	N/A	INTRINSIC
PLDc	215	242	3.62e-3	SMART
Pfam:PLDc_3	245	421	2e-101	PFAM
PLDc	434	460	6.11e0	SMART
low complexity region	511	521	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111167
AA Change: M75K

PolyPhen 2 Score 0.754 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000106797
Gene: ENSMUSG00000055214
AA Change: M75K

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
PLDc	153	180	3.62e-3	SMART
PLDc	372	398	6.11e0	SMART
low complexity region	449	459	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000125404

SMART Domains

Protein: ENSMUSP00000121428
Gene: ENSMUSG00000055214

Domain	Start	End	E-Value	Type
transmembrane domain	69	91	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144340

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156184

Meta Mutation Damage Score

0.2012

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.6%

Validation Efficiency

99% (97/98)

MGI Phenotype

PHENOTYPE: No abnormal phenotype was observed in a high-throughput screen, nor in a pathology assessment. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acad10	T	A	5: 121,765,445 (GRCm39)	K843*	probably null	Het
Adam26b	T	C	8: 43,973,387 (GRCm39)	I538M	probably benign	Het
Adamtsl1	T	C	4: 86,150,852 (GRCm39)	Y337H	probably damaging	Het
Ak7	T	C	12: 105,682,307 (GRCm39)	M156T	probably damaging	Het
Aldh3a1	A	G	11: 61,106,338 (GRCm39)	M238V	probably benign	Het
Asic4	T	A	1: 75,450,155 (GRCm39)		probably benign	Het
AW551984	A	G	9: 39,511,937 (GRCm39)	S25P	probably damaging	Het
Bbs7	T	A	3: 36,661,818 (GRCm39)	Y127F	possibly damaging	Het
Bco1	G	A	8: 117,835,516 (GRCm39)	E156K	possibly damaging	Het
Becn1	T	C	11: 101,181,275 (GRCm39)	D342G	probably damaging	Het
Birc6	T	A	17: 74,956,749 (GRCm39)	I3575N	probably damaging	Het
Brd10	T	C	19: 29,731,068 (GRCm39)	Y715C	probably damaging	Het
Cc2d2a	A	T	5: 43,860,636 (GRCm39)	M522L	probably benign	Het
Cerkl	A	G	2: 79,172,795 (GRCm39)	F293L	probably benign	Het
Chil3	T	G	3: 106,056,221 (GRCm39)	N311T	probably benign	Het
Cpeb2	T	A	5: 43,443,056 (GRCm39)		probably benign	Het
Cpxm2	A	G	7: 131,730,134 (GRCm39)	S162P	probably damaging	Het
Cracr2b	A	C	7: 141,044,176 (GRCm39)	E136A	probably damaging	Het
Cyp2a4	T	A	7: 26,012,258 (GRCm39)	M347K	probably benign	Het
Dicer1	C	A	12: 104,668,889 (GRCm39)	R1264S	probably benign	Het
Dlgap1	T	A	17: 71,068,341 (GRCm39)	N609K	probably benign	Het
Dnhd1	A	G	7: 105,323,651 (GRCm39)	T641A	probably benign	Het
Egfl8	T	C	17: 34,833,856 (GRCm39)	Y74C	probably damaging	Het
Esyt1	A	G	10: 128,348,078 (GRCm39)	S901P	probably benign	Het
Fam83e	A	T	7: 45,373,372 (GRCm39)	D246V	probably damaging	Het
Galnt2	T	C	8: 125,065,323 (GRCm39)		probably benign	Het
Hdc	A	G	2: 126,436,871 (GRCm39)		probably benign	Het
Herc1	A	C	9: 66,307,054 (GRCm39)	Q958P	probably benign	Het
Iqcg	T	A	16: 32,870,213 (GRCm39)		probably benign	Het
Iqub	A	T	6: 24,450,829 (GRCm39)	F590Y	probably damaging	Het
Jak2	T	C	19: 29,289,238 (GRCm39)	I1130T	probably benign	Het
Kbtbd11	G	A	8: 15,077,499 (GRCm39)	A33T	probably benign	Het
Kcnip4	A	G	5: 48,667,054 (GRCm39)	L37P	probably damaging	Het
Klk6	A	G	7: 43,477,963 (GRCm39)	N112D	probably damaging	Het
Kmt2c	G	A	5: 25,559,745 (GRCm39)	T1011I	probably damaging	Het
Knl1	A	T	2: 118,898,869 (GRCm39)	K190M	probably damaging	Het
Lama3	T	A	18: 12,598,535 (GRCm39)	S981T	possibly damaging	Het
Lrrc18	T	C	14: 32,730,608 (GRCm39)	L49P	probably damaging	Het
Lrrc31	T	C	3: 30,741,674 (GRCm39)	E245G	probably damaging	Het
Lypd10	T	A	7: 24,413,712 (GRCm39)	S243T	probably benign	Het
Macf1	T	C	4: 123,338,737 (GRCm39)	I2456M	probably benign	Het
Mcm6	T	A	1: 128,261,292 (GRCm39)	T771S	probably benign	Het
Met	A	C	6: 17,534,197 (GRCm39)	Y680S	possibly damaging	Het
Mixl1	T	A	1: 180,524,211 (GRCm39)	T123S	probably damaging	Het
Myh8	A	T	11: 67,183,731 (GRCm39)	I787F	probably benign	Het
Myocd	A	G	11: 65,087,051 (GRCm39)	F292S	probably damaging	Het
Neb	T	C	2: 52,203,902 (GRCm39)		probably null	Het
Nfe2l1	A	G	11: 96,718,194 (GRCm39)	S114P	probably damaging	Het
Nrxn2	T	C	19: 6,541,551 (GRCm39)	S986P	probably damaging	Het
Oprl1	T	C	2: 181,360,527 (GRCm39)		probably null	Het
Or11h6	T	C	14: 50,880,461 (GRCm39)	V241A	possibly damaging	Het
Or4a73	A	T	2: 89,421,095 (GRCm39)	Y121*	probably null	Het
Or5b101	T	G	19: 13,005,295 (GRCm39)	T133P	probably damaging	Het
Or6c8	A	G	10: 128,915,640 (GRCm39)	F64S	probably damaging	Het
Or8b53	G	A	9: 38,667,425 (GRCm39)	G147D	probably damaging	Het
Or8c9	A	T	9: 38,241,467 (GRCm39)	T195S	probably benign	Het
Panx2	T	A	15: 88,952,610 (GRCm39)	I359N	probably damaging	Het
Pik3c2b	T	A	1: 133,005,134 (GRCm39)	V545E	probably damaging	Het
Piwil4	T	C	9: 14,638,748 (GRCm39)	N259S	probably benign	Het
Plcxd2	A	T	16: 45,800,919 (GRCm39)	F102I	probably damaging	Het
Pmp22	T	A	11: 63,041,929 (GRCm39)		probably benign	Het
Polr2a	A	G	11: 69,631,845 (GRCm39)	S1074P	possibly damaging	Het
Pop1	T	A	15: 34,526,352 (GRCm39)	V649E	possibly damaging	Het
Prc1	A	G	7: 79,962,850 (GRCm39)	N548S	probably damaging	Het
Prss51	T	C	14: 64,334,588 (GRCm39)	L202P	probably damaging	Het
Rhpn1	T	C	15: 75,585,428 (GRCm39)	S576P	possibly damaging	Het
Rictor	A	G	15: 6,738,123 (GRCm39)	D20G	probably benign	Het
Rpl13a-ps1	A	T	19: 50,018,645 (GRCm39)	L177*	probably null	Het
Rpl23a-ps1	T	G	1: 46,021,087 (GRCm39)		noncoding transcript	Het
Saa2	A	G	7: 46,402,902 (GRCm39)	D51G	probably damaging	Het
Sec31a	A	T	5: 100,551,977 (GRCm39)		probably benign	Het
Secisbp2	G	A	13: 51,837,361 (GRCm39)	E841K	possibly damaging	Het
Serinc1	A	G	10: 57,393,306 (GRCm39)	Y437H	probably damaging	Het
Slc39a12	A	T	2: 14,440,492 (GRCm39)	H481L	probably benign	Het
Suz12	T	A	11: 79,920,859 (GRCm39)	N586K	probably damaging	Het
Synm	T	C	7: 67,386,630 (GRCm39)	Y344C	possibly damaging	Het
Tas2r104	A	G	6: 131,662,304 (GRCm39)	V135A	probably benign	Het
Tdrd9	T	C	12: 112,034,673 (GRCm39)	S1371P	probably benign	Het
Tg	T	A	15: 66,700,382 (GRCm39)	D893E	probably benign	Het
Thoc5	C	A	11: 4,868,217 (GRCm39)	D423E	possibly damaging	Het
Trim11	G	A	11: 58,881,361 (GRCm39)	R418H	probably damaging	Het
Trim52	T	G	14: 106,344,399 (GRCm39)	V19G	probably damaging	Het
Tuba4a	C	A	1: 75,192,502 (GRCm39)	V371L	probably damaging	Het
Ugt8a	A	G	3: 125,708,606 (GRCm39)	V168A	probably benign	Het
Ulk1	C	T	5: 110,938,951 (GRCm39)	G496R	probably damaging	Het
Usp40	A	G	1: 87,874,320 (GRCm39)	*1236Q	probably null	Het
Vmn2r100	C	A	17: 19,742,382 (GRCm39)	P252Q	possibly damaging	Het
Vmn2r24	A	G	6: 123,757,350 (GRCm39)		probably null	Het
Vmn2r53	A	G	7: 12,316,338 (GRCm39)	Y494H	probably damaging	Het
Vmn2r65	T	A	7: 84,595,442 (GRCm39)	D414V	probably benign	Het
Wdr26	A	T	1: 181,010,444 (GRCm39)	L519*	probably null	Het
Wnk1	A	G	6: 119,940,112 (GRCm39)	V173A	probably damaging	Het
Zfp217	C	T	2: 169,957,382 (GRCm39)	A539T	probably benign	Het
Zfp318	T	C	17: 46,707,634 (GRCm39)	S231P	probably damaging	Het
Zfp398	T	C	6: 47,842,782 (GRCm39)	V146A	probably benign	Het
Zfp410	T	C	12: 84,378,486 (GRCm39)	M270T	probably damaging	Het
Zfp445	A	T	9: 122,682,578 (GRCm39)	H454Q	possibly damaging	Het

Other mutations in Pld5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00815:Pld5	APN	1	175,967,585 (GRCm39)	missense	probably damaging	1.00
IGL00949:Pld5	APN	1	175,803,039 (GRCm39)	missense	probably damaging	1.00
IGL01067:Pld5	APN	1	176,102,445 (GRCm39)	utr 5 prime	probably benign
IGL02174:Pld5	APN	1	176,102,310 (GRCm39)	missense	possibly damaging	0.86
IGL02380:Pld5	APN	1	175,967,610 (GRCm39)	missense	probably damaging	0.97
IGL02879:Pld5	APN	1	175,798,157 (GRCm39)	missense	probably damaging	1.00
R0087:Pld5	UTSW	1	175,812,025 (GRCm39)	missense	probably damaging	0.98
R0135:Pld5	UTSW	1	175,798,155 (GRCm39)	missense	probably damaging	1.00
R0144:Pld5	UTSW	1	175,798,107 (GRCm39)	missense	probably benign	0.00
R0362:Pld5	UTSW	1	175,803,146 (GRCm39)	nonsense	probably null
R0454:Pld5	UTSW	1	176,102,295 (GRCm39)	missense	probably benign	0.00
R0722:Pld5	UTSW	1	175,803,081 (GRCm39)	missense	probably benign	0.34
R0751:Pld5	UTSW	1	175,872,462 (GRCm39)	missense	probably damaging	0.98
R0785:Pld5	UTSW	1	175,803,018 (GRCm39)	splice site	probably benign
R1184:Pld5	UTSW	1	175,872,462 (GRCm39)	missense	probably damaging	0.98
R1501:Pld5	UTSW	1	175,803,087 (GRCm39)	missense	probably benign	0.36
R1644:Pld5	UTSW	1	175,803,192 (GRCm39)	missense	possibly damaging	0.86
R2012:Pld5	UTSW	1	175,791,579 (GRCm39)	missense	probably benign	0.27
R2426:Pld5	UTSW	1	175,791,542 (GRCm39)	missense	probably benign
R3508:Pld5	UTSW	1	175,821,603 (GRCm39)	missense	probably damaging	1.00
R3917:Pld5	UTSW	1	175,791,504 (GRCm39)	missense	probably benign	0.00
R4207:Pld5	UTSW	1	175,821,441 (GRCm39)	missense	probably damaging	1.00
R4373:Pld5	UTSW	1	175,967,583 (GRCm39)	missense	probably damaging	1.00
R4828:Pld5	UTSW	1	176,102,433 (GRCm39)	missense	probably benign	0.06
R4831:Pld5	UTSW	1	176,102,450 (GRCm39)	utr 5 prime	probably benign
R5861:Pld5	UTSW	1	175,917,571 (GRCm39)	missense	probably damaging	1.00
R6182:Pld5	UTSW	1	175,872,420 (GRCm39)	missense	probably benign	0.35
R6191:Pld5	UTSW	1	175,798,100 (GRCm39)	missense	probably benign	0.04
R6246:Pld5	UTSW	1	175,791,475 (GRCm39)	nonsense	probably null
R6737:Pld5	UTSW	1	175,917,588 (GRCm39)	missense	probably damaging	1.00
R7082:Pld5	UTSW	1	175,917,442 (GRCm39)	missense	probably benign	0.21
R7164:Pld5	UTSW	1	176,041,187 (GRCm39)	start codon destroyed	probably null	0.00
R7237:Pld5	UTSW	1	176,102,301 (GRCm39)	missense	possibly damaging	0.79
R7635:Pld5	UTSW	1	175,821,416 (GRCm39)	critical splice donor site	probably null
R7805:Pld5	UTSW	1	175,872,480 (GRCm39)	missense	probably damaging	1.00
R7967:Pld5	UTSW	1	176,102,264 (GRCm39)	missense	probably benign	0.03
R8038:Pld5	UTSW	1	175,872,463 (GRCm39)	missense	probably benign	0.19
R8995:Pld5	UTSW	1	175,791,580 (GRCm39)	missense	probably benign	0.01
R9033:Pld5	UTSW	1	175,967,585 (GRCm39)	missense	probably damaging	0.99
R9067:Pld5	UTSW	1	175,917,474 (GRCm39)	missense	probably benign	0.00
R9156:Pld5	UTSW	1	175,902,003 (GRCm39)	missense	probably benign	0.05
R9156:Pld5	UTSW	1	175,803,104 (GRCm39)	missense	possibly damaging	0.73
R9712:Pld5	UTSW	1	175,791,572 (GRCm39)	missense	probably benign	0.01
X0004:Pld5	UTSW	1	176,089,088 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- GATGGAACATGATCTAGCCCTGCAC -3'
(R):5'- TCAACTTTCAGAACACCTCAGGTTCG -3'

Sequencing Primer
(F):5'- GTGGAATGACACATGCTTAACC -3'
(R):5'- AACACCTCAGGTTCGAGTATG -3'

Posted On

2013-05-23