Incidental Mutation 'R5183:Itgad'
| ID |
397673 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Itgad
|
| Ensembl Gene |
ENSMUSG00000070369 |
| Gene Name |
integrin, alpha D |
| Synonyms |
Cd11d |
| MMRRC Submission |
042762-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.058)
|
| Stock # |
R5183 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
127773105-127822988 bp(+) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
T to C
at 127797395 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000135572
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000033051]
[ENSMUST00000106237]
[ENSMUST00000177111]
|
| AlphaFold |
Q3V0T4 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000033051
|
| SMART Domains |
Protein: ENSMUSP00000033051
Gene: ENSMUSG00000070369
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
Int_alpha
|
38 |
88 |
1.35e1 |
SMART |
|
VWA
|
155 |
376 |
1.24e-36 |
SMART |
|
Blast:VWA
|
405 |
436 |
1e-9 |
BLAST |
|
Int_alpha
|
443 |
492 |
3.67e-3 |
SMART |
|
Int_alpha
|
496 |
553 |
1.03e-6 |
SMART |
|
Int_alpha
|
559 |
615 |
1.73e-13 |
SMART |
|
Int_alpha
|
622 |
676 |
1.69e-2 |
SMART |
|
transmembrane domain
|
1142 |
1164 |
N/A |
INTRINSIC |
|
Pfam:Integrin_alpha
|
1165 |
1179 |
1.3e-7 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000106237
|
| SMART Domains |
Protein: ENSMUSP00000101844
Gene: ENSMUSG00000070369
| Domain | Start | End | E-Value | Type |
|---|
|
Int_alpha
|
40 |
90 |
1.35e1 |
SMART |
|
VWA
|
157 |
342 |
1.31e-44 |
SMART |
|
Blast:VWA
|
371 |
402 |
9e-10 |
BLAST |
|
Int_alpha
|
409 |
458 |
3.67e-3 |
SMART |
|
Int_alpha
|
462 |
519 |
1.03e-6 |
SMART |
|
Int_alpha
|
525 |
581 |
1.73e-13 |
SMART |
|
Int_alpha
|
588 |
642 |
1.69e-2 |
SMART |
|
transmembrane domain
|
1108 |
1130 |
N/A |
INTRINSIC |
|
Pfam:Integrin_alpha
|
1131 |
1145 |
4.3e-7 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000177111
|
| SMART Domains |
Protein: ENSMUSP00000135572
Gene: ENSMUSG00000070369
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
Int_alpha
|
38 |
88 |
1.35e1 |
SMART |
|
VWA
|
155 |
340 |
1.31e-44 |
SMART |
|
Blast:VWA
|
369 |
400 |
9e-10 |
BLAST |
|
Int_alpha
|
407 |
456 |
3.67e-3 |
SMART |
|
Int_alpha
|
460 |
517 |
1.03e-6 |
SMART |
|
Int_alpha
|
523 |
579 |
1.73e-13 |
SMART |
|
Int_alpha
|
586 |
640 |
1.69e-2 |
SMART |
|
transmembrane domain
|
1106 |
1128 |
N/A |
INTRINSIC |
|
Pfam:Integrin_alpha
|
1129 |
1143 |
5.4e-7 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000205522
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000205646
|
| Meta Mutation Damage Score |
0.9365 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.3%
- 20x: 95.4%
|
| Validation Efficiency |
99% (73/74) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the beta-2 integrin family of membrane glycoproteins, which are are composed of non-covalently linked alpha and beta subunits to form a heterodimer. It encodes the alpha subunit of the cell surface heterodimers and is involved in the activation and adhesion functions of leukocytes. The gene is located about 11kb downstream of the integrin subunit alpha X gene, another member of the integrin family. It is expressed in the tissue and circulating myeloid leukocytes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]
PHENOTYPE: Homozygous null mice exhibit a reduced staphylococcal enterotoxin-induced T cell response. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 73 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4930522L14Rik |
A |
T |
5: 109,887,171 (GRCm39) |
D8E |
probably damaging |
Het |
| Abca3 |
T |
G |
17: 24,593,427 (GRCm39) |
S275A |
probably benign |
Het |
| Adk |
A |
G |
14: 21,290,599 (GRCm39) |
N155S |
probably damaging |
Het |
| Aqp11 |
T |
C |
7: 97,386,963 (GRCm39) |
T78A |
probably benign |
Het |
| Arhgef40 |
T |
C |
14: 52,241,556 (GRCm39) |
V1455A |
probably damaging |
Het |
| Asxl3 |
C |
G |
18: 22,658,356 (GRCm39) |
A2122G |
possibly damaging |
Het |
| Cdan1 |
T |
A |
2: 120,560,061 (GRCm39) |
I368F |
probably damaging |
Het |
| Cdc42bpg |
A |
G |
19: 6,371,835 (GRCm39) |
|
probably benign |
Het |
| Celsr3 |
A |
G |
9: 108,714,759 (GRCm39) |
D2013G |
probably damaging |
Het |
| Cep152 |
A |
G |
2: 125,408,558 (GRCm39) |
V1332A |
probably damaging |
Het |
| Cftr |
T |
C |
6: 18,299,832 (GRCm39) |
S1172P |
probably damaging |
Het |
| Commd2 |
A |
T |
3: 57,554,235 (GRCm39) |
D155E |
probably benign |
Het |
| Coq7 |
T |
A |
7: 118,127,490 (GRCm39) |
|
probably benign |
Het |
| Dnase2a |
T |
C |
8: 85,636,207 (GRCm39) |
|
probably benign |
Het |
| Dnhd1 |
G |
A |
7: 105,352,416 (GRCm39) |
R2523Q |
probably damaging |
Het |
| Dock6 |
C |
T |
9: 21,752,899 (GRCm39) |
V305I |
probably benign |
Het |
| Ehmt1 |
G |
T |
2: 24,767,509 (GRCm39) |
P135T |
probably damaging |
Het |
| Fasn |
T |
C |
11: 120,699,708 (GRCm39) |
Q2288R |
probably benign |
Het |
| Fat3 |
T |
A |
9: 15,871,609 (GRCm39) |
N3594I |
probably damaging |
Het |
| Galnt10 |
T |
C |
11: 57,660,414 (GRCm39) |
M284T |
probably damaging |
Het |
| Gatm |
A |
T |
2: 122,425,984 (GRCm39) |
F422L |
probably benign |
Het |
| Glrp1 |
A |
T |
1: 88,437,574 (GRCm39) |
I12N |
unknown |
Het |
| Gm5455 |
T |
A |
13: 110,441,962 (GRCm39) |
|
noncoding transcript |
Het |
| Gpam |
C |
T |
19: 55,071,659 (GRCm39) |
E361K |
probably damaging |
Het |
| Gps2 |
A |
G |
11: 69,806,023 (GRCm39) |
T126A |
probably benign |
Het |
| Grn |
C |
A |
11: 102,321,380 (GRCm39) |
|
probably benign |
Het |
| Gsg1 |
T |
A |
6: 135,218,368 (GRCm39) |
Q176L |
probably damaging |
Het |
| Htra1 |
C |
T |
7: 130,585,446 (GRCm39) |
A412V |
possibly damaging |
Het |
| Icosl |
C |
T |
10: 77,905,319 (GRCm39) |
|
probably benign |
Het |
| Iqgap1 |
T |
C |
7: 80,372,813 (GRCm39) |
T1509A |
probably damaging |
Het |
| Irag2 |
A |
G |
6: 145,083,946 (GRCm39) |
E37G |
probably benign |
Het |
| Kdm5a |
C |
A |
6: 120,406,977 (GRCm39) |
|
probably benign |
Het |
| Kidins220 |
T |
C |
12: 25,101,125 (GRCm39) |
L1017S |
probably benign |
Het |
| Lrrc37 |
T |
C |
11: 103,433,947 (GRCm39) |
Y898C |
probably damaging |
Het |
| Man2b1 |
T |
A |
8: 85,822,413 (GRCm39) |
S804R |
probably damaging |
Het |
| Miip |
A |
T |
4: 147,947,526 (GRCm39) |
F211L |
probably damaging |
Het |
| Moxd1 |
T |
G |
10: 24,155,445 (GRCm39) |
|
probably null |
Het |
| Moxd1 |
T |
G |
10: 24,163,034 (GRCm39) |
Y499D |
probably damaging |
Het |
| Mrpl45 |
T |
C |
11: 97,207,577 (GRCm39) |
I24T |
probably benign |
Het |
| Msh2 |
C |
A |
17: 88,030,841 (GRCm39) |
A906E |
probably benign |
Het |
| Mthfr |
T |
A |
4: 148,135,817 (GRCm39) |
|
probably null |
Het |
| Muc5b |
T |
A |
7: 141,404,547 (GRCm39) |
D827E |
unknown |
Het |
| Myo1g |
G |
C |
11: 6,458,243 (GRCm39) |
L866V |
probably damaging |
Het |
| Myo3a |
A |
T |
2: 22,468,170 (GRCm39) |
M475L |
probably benign |
Het |
| Ncoa2 |
A |
C |
1: 13,244,590 (GRCm39) |
L703V |
probably damaging |
Het |
| Ncoa4-ps |
A |
C |
12: 119,225,023 (GRCm39) |
|
noncoding transcript |
Het |
| Nme6 |
T |
A |
9: 109,670,557 (GRCm39) |
Y69* |
probably null |
Het |
| Nwd1 |
T |
A |
8: 73,397,714 (GRCm39) |
M651K |
probably benign |
Het |
| Or4k15c |
A |
C |
14: 50,322,003 (GRCm39) |
I45S |
probably damaging |
Het |
| Orc2 |
A |
T |
1: 58,513,977 (GRCm39) |
S298R |
possibly damaging |
Het |
| Oscp1 |
A |
T |
4: 125,981,522 (GRCm39) |
E328V |
probably damaging |
Het |
| Pan2 |
T |
C |
10: 128,153,838 (GRCm39) |
V1003A |
probably damaging |
Het |
| Pik3r4 |
T |
C |
9: 105,559,507 (GRCm39) |
V1200A |
possibly damaging |
Het |
| Prl |
T |
C |
13: 27,241,579 (GRCm39) |
|
probably benign |
Het |
| Ptprk |
T |
C |
10: 28,351,232 (GRCm39) |
V575A |
probably benign |
Het |
| Rflna |
A |
T |
5: 125,088,469 (GRCm39) |
S139C |
probably damaging |
Het |
| Robo1 |
T |
C |
16: 72,539,038 (GRCm39) |
F27S |
probably benign |
Het |
| Secisbp2 |
T |
C |
13: 51,819,460 (GRCm39) |
S347P |
probably benign |
Het |
| Shmt1 |
A |
G |
11: 60,688,308 (GRCm39) |
|
probably benign |
Het |
| Slc27a3 |
A |
G |
3: 90,296,477 (GRCm39) |
|
probably null |
Het |
| Slc6a5 |
T |
C |
7: 49,585,957 (GRCm39) |
V425A |
probably damaging |
Het |
| Slc8a3 |
A |
G |
12: 81,361,265 (GRCm39) |
V518A |
possibly damaging |
Het |
| Slco1a4 |
A |
T |
6: 141,785,357 (GRCm39) |
Y78N |
probably damaging |
Het |
| Stt3b |
A |
T |
9: 115,095,211 (GRCm39) |
H273Q |
probably damaging |
Het |
| Tle6 |
T |
A |
10: 81,428,635 (GRCm39) |
N431I |
probably damaging |
Het |
| Trim34b |
C |
A |
7: 103,979,118 (GRCm39) |
Q122K |
possibly damaging |
Het |
| Trio |
C |
A |
15: 27,902,686 (GRCm39) |
R258S |
probably benign |
Het |
| Ttc7 |
A |
T |
17: 87,600,306 (GRCm39) |
D23V |
probably damaging |
Het |
| Ttn |
A |
T |
2: 76,810,525 (GRCm39) |
M1K |
probably null |
Het |
| Ufsp2 |
T |
C |
8: 46,447,126 (GRCm39) |
V391A |
probably benign |
Het |
| Vps13c |
T |
C |
9: 67,815,334 (GRCm39) |
L990S |
probably damaging |
Het |
| Zfp108 |
G |
T |
7: 23,960,163 (GRCm39) |
K251N |
probably benign |
Het |
| Zfp618 |
G |
A |
4: 63,017,519 (GRCm39) |
M234I |
probably benign |
Het |
|
| Other mutations in Itgad |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00777:Itgad
|
APN |
7 |
127,803,022 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02036:Itgad
|
APN |
7 |
127,788,993 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
IGL02589:Itgad
|
APN |
7 |
127,780,883 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02648:Itgad
|
APN |
7 |
127,782,546 (GRCm39) |
intron |
probably benign |
|
|
IGL02735:Itgad
|
APN |
7 |
127,792,888 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03088:Itgad
|
APN |
7 |
127,802,204 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL03110:Itgad
|
APN |
7 |
127,785,157 (GRCm39) |
missense |
probably damaging |
1.00 |
|
BB007:Itgad
|
UTSW |
7 |
127,782,280 (GRCm39) |
missense |
probably benign |
0.01 |
|
BB017:Itgad
|
UTSW |
7 |
127,782,280 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0060:Itgad
|
UTSW |
7 |
127,802,158 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0060:Itgad
|
UTSW |
7 |
127,802,158 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0184:Itgad
|
UTSW |
7 |
127,788,403 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0211:Itgad
|
UTSW |
7 |
127,803,813 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0211:Itgad
|
UTSW |
7 |
127,803,813 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0282:Itgad
|
UTSW |
7 |
127,789,150 (GRCm39) |
splice site |
probably benign |
|
|
R0326:Itgad
|
UTSW |
7 |
127,797,550 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0646:Itgad
|
UTSW |
7 |
127,773,176 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R0947:Itgad
|
UTSW |
7 |
127,774,865 (GRCm39) |
missense |
probably benign |
0.08 |
|
R1439:Itgad
|
UTSW |
7 |
127,782,178 (GRCm39) |
missense |
probably benign |
0.44 |
|
R1454:Itgad
|
UTSW |
7 |
127,791,309 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1503:Itgad
|
UTSW |
7 |
127,797,293 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1531:Itgad
|
UTSW |
7 |
127,777,542 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1572:Itgad
|
UTSW |
7 |
127,802,406 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1602:Itgad
|
UTSW |
7 |
127,790,111 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1732:Itgad
|
UTSW |
7 |
127,804,279 (GRCm39) |
missense |
probably benign |
|
|
R2278:Itgad
|
UTSW |
7 |
127,804,342 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R2851:Itgad
|
UTSW |
7 |
127,803,732 (GRCm39) |
missense |
probably benign |
0.01 |
|
R3029:Itgad
|
UTSW |
7 |
127,777,543 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R3080:Itgad
|
UTSW |
7 |
127,784,959 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R3150:Itgad
|
UTSW |
7 |
127,790,153 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3176:Itgad
|
UTSW |
7 |
127,790,153 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3177:Itgad
|
UTSW |
7 |
127,790,153 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3276:Itgad
|
UTSW |
7 |
127,790,153 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3277:Itgad
|
UTSW |
7 |
127,790,153 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3833:Itgad
|
UTSW |
7 |
127,785,405 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4541:Itgad
|
UTSW |
7 |
127,797,287 (GRCm39) |
missense |
probably benign |
0.13 |
|
R4649:Itgad
|
UTSW |
7 |
127,788,703 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4753:Itgad
|
UTSW |
7 |
127,822,875 (GRCm39) |
makesense |
probably null |
|
|
R4852:Itgad
|
UTSW |
7 |
127,797,702 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4931:Itgad
|
UTSW |
7 |
127,803,797 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4970:Itgad
|
UTSW |
7 |
127,789,015 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R5116:Itgad
|
UTSW |
7 |
127,803,065 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5233:Itgad
|
UTSW |
7 |
127,792,600 (GRCm39) |
splice site |
probably null |
|
|
R5334:Itgad
|
UTSW |
7 |
127,788,458 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5731:Itgad
|
UTSW |
7 |
127,797,726 (GRCm39) |
missense |
probably benign |
0.19 |
|
R5760:Itgad
|
UTSW |
7 |
127,802,537 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5896:Itgad
|
UTSW |
7 |
127,773,188 (GRCm39) |
missense |
probably benign |
0.34 |
|
R5955:Itgad
|
UTSW |
7 |
127,788,653 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6247:Itgad
|
UTSW |
7 |
127,784,959 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R6659:Itgad
|
UTSW |
7 |
127,785,120 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7027:Itgad
|
UTSW |
7 |
127,782,161 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7104:Itgad
|
UTSW |
7 |
127,797,550 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7120:Itgad
|
UTSW |
7 |
127,773,146 (GRCm39) |
start codon destroyed |
probably null |
0.02 |
|
R7272:Itgad
|
UTSW |
7 |
127,804,245 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7303:Itgad
|
UTSW |
7 |
127,789,351 (GRCm39) |
missense |
probably benign |
|
|
R7324:Itgad
|
UTSW |
7 |
127,788,979 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7565:Itgad
|
UTSW |
7 |
127,782,187 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7566:Itgad
|
UTSW |
7 |
127,791,279 (GRCm39) |
missense |
probably benign |
0.40 |
|
R7930:Itgad
|
UTSW |
7 |
127,782,280 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8550:Itgad
|
UTSW |
7 |
127,803,064 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8816:Itgad
|
UTSW |
7 |
127,797,542 (GRCm39) |
nonsense |
probably null |
|
|
R8849:Itgad
|
UTSW |
7 |
127,789,157 (GRCm39) |
splice site |
probably benign |
|
|
R8952:Itgad
|
UTSW |
7 |
127,789,324 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9345:Itgad
|
UTSW |
7 |
127,788,479 (GRCm39) |
missense |
probably benign |
0.02 |
|
R9354:Itgad
|
UTSW |
7 |
127,785,146 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9526:Itgad
|
UTSW |
7 |
127,777,552 (GRCm39) |
missense |
probably benign |
0.09 |
|
R9614:Itgad
|
UTSW |
7 |
127,803,022 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9623:Itgad
|
UTSW |
7 |
127,803,723 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9773:Itgad
|
UTSW |
7 |
127,789,222 (GRCm39) |
missense |
probably damaging |
0.97 |
|
RF019:Itgad
|
UTSW |
7 |
127,791,380 (GRCm39) |
missense |
probably benign |
0.08 |
|
Z1176:Itgad
|
UTSW |
7 |
127,789,259 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Itgad
|
UTSW |
7 |
127,788,673 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGTTTGGATTAACAATACCTCCCC -3'
(R):5'- AGAAGCAACCTGTCTCCCAG -3'
Sequencing Primer
(F):5'- GCCGCATAGTCCTAAGAGTTGTAAC -3'
(R):5'- TCTCCCAGGAAGGCCTTGTAG -3'
|
| Posted On |
2016-07-06 |
Incidental Mutation