Mutagenetix > Incidental Mutation

Incidental Mutation 'R5183:Secisbp2'

397705

Institutional Source

Beutler Lab

Gene Symbol

Secisbp2

Ensembl Gene

ENSMUSG00000035139

Gene Name

SECIS binding protein 2

Synonyms

SBP2, 2810012K13Rik, 2210413N07Rik

MMRRC Submission

042762-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.077) question?

Stock #

R5183 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

51805733-51838080 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 51819460 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 347 (S347P)

Ref Sequence

ENSEMBL: ENSMUSP00000105671 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040117] [ENSMUST00000110044]

AlphaFold

Q3U1C4

Predicted Effect

probably benign
Transcript: ENSMUST00000040117
AA Change: S347P

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000045740
Gene: ENSMUSG00000035139
AA Change: S347P

Domain	Start	End	E-Value	Type
low complexity region	179	192	N/A	INTRINSIC
low complexity region	375	389	N/A	INTRINSIC
low complexity region	542	553	N/A	INTRINSIC
Pfam:Ribosomal_L7Ae	662	764	4.4e-23	PFAM
low complexity region	793	809	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110044
AA Change: S347P

PolyPhen 2 Score 0.141 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000105671
Gene: ENSMUSG00000035139
AA Change: S347P

Domain	Start	End	E-Value	Type
low complexity region	179	192	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154202

Meta Mutation Damage Score

0.0685

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.4%

Validation Efficiency

99% (73/74)

MGI Phenotype

FUNCTION: The incorporation of selenocysteine into a protein requires the concerted action of an mRNA element called a sec insertion sequence (SECIS), a selenocysteine-specific translation elongation factor and a SECIS binding protein. With these elements in place, a UGA codon can be decoded as selenocysteine. The gene described in this record encodes a nuclear protein that functions as a SECIS binding protein. Mutations in a similar gene in human have been associated with a reduction in activity of a specific thyroxine deiodinase, a selenocysteine-containing enzyme, and abnormal thyroid hormone metabolism. Alternate splicing results in multiple transcript variants. [provided by RefSeq, May 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit complete preweaning lethality while heterozygotes exhibit reduced serum selenium levels. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930522L14Rik	A	T	5: 109,887,171 (GRCm39)	D8E	probably damaging	Het
Abca3	T	G	17: 24,593,427 (GRCm39)	S275A	probably benign	Het
Adk	A	G	14: 21,290,599 (GRCm39)	N155S	probably damaging	Het
Aqp11	T	C	7: 97,386,963 (GRCm39)	T78A	probably benign	Het
Arhgef40	T	C	14: 52,241,556 (GRCm39)	V1455A	probably damaging	Het
Asxl3	C	G	18: 22,658,356 (GRCm39)	A2122G	possibly damaging	Het
Cdan1	T	A	2: 120,560,061 (GRCm39)	I368F	probably damaging	Het
Cdc42bpg	A	G	19: 6,371,835 (GRCm39)		probably benign	Het
Celsr3	A	G	9: 108,714,759 (GRCm39)	D2013G	probably damaging	Het
Cep152	A	G	2: 125,408,558 (GRCm39)	V1332A	probably damaging	Het
Cftr	T	C	6: 18,299,832 (GRCm39)	S1172P	probably damaging	Het
Commd2	A	T	3: 57,554,235 (GRCm39)	D155E	probably benign	Het
Coq7	T	A	7: 118,127,490 (GRCm39)		probably benign	Het
Dnase2a	T	C	8: 85,636,207 (GRCm39)		probably benign	Het
Dnhd1	G	A	7: 105,352,416 (GRCm39)	R2523Q	probably damaging	Het
Dock6	C	T	9: 21,752,899 (GRCm39)	V305I	probably benign	Het
Ehmt1	G	T	2: 24,767,509 (GRCm39)	P135T	probably damaging	Het
Fasn	T	C	11: 120,699,708 (GRCm39)	Q2288R	probably benign	Het
Fat3	T	A	9: 15,871,609 (GRCm39)	N3594I	probably damaging	Het
Galnt10	T	C	11: 57,660,414 (GRCm39)	M284T	probably damaging	Het
Gatm	A	T	2: 122,425,984 (GRCm39)	F422L	probably benign	Het
Glrp1	A	T	1: 88,437,574 (GRCm39)	I12N	unknown	Het
Gm5455	T	A	13: 110,441,962 (GRCm39)		noncoding transcript	Het
Gpam	C	T	19: 55,071,659 (GRCm39)	E361K	probably damaging	Het
Gps2	A	G	11: 69,806,023 (GRCm39)	T126A	probably benign	Het
Grn	C	A	11: 102,321,380 (GRCm39)		probably benign	Het
Gsg1	T	A	6: 135,218,368 (GRCm39)	Q176L	probably damaging	Het
Htra1	C	T	7: 130,585,446 (GRCm39)	A412V	possibly damaging	Het
Icosl	C	T	10: 77,905,319 (GRCm39)		probably benign	Het
Iqgap1	T	C	7: 80,372,813 (GRCm39)	T1509A	probably damaging	Het
Irag2	A	G	6: 145,083,946 (GRCm39)	E37G	probably benign	Het
Itgad	T	C	7: 127,797,395 (GRCm39)		probably null	Het
Kdm5a	C	A	6: 120,406,977 (GRCm39)		probably benign	Het
Kidins220	T	C	12: 25,101,125 (GRCm39)	L1017S	probably benign	Het
Lrrc37	T	C	11: 103,433,947 (GRCm39)	Y898C	probably damaging	Het
Man2b1	T	A	8: 85,822,413 (GRCm39)	S804R	probably damaging	Het
Miip	A	T	4: 147,947,526 (GRCm39)	F211L	probably damaging	Het
Moxd1	T	G	10: 24,155,445 (GRCm39)		probably null	Het
Moxd1	T	G	10: 24,163,034 (GRCm39)	Y499D	probably damaging	Het
Mrpl45	T	C	11: 97,207,577 (GRCm39)	I24T	probably benign	Het
Msh2	C	A	17: 88,030,841 (GRCm39)	A906E	probably benign	Het
Mthfr	T	A	4: 148,135,817 (GRCm39)		probably null	Het
Muc5b	T	A	7: 141,404,547 (GRCm39)	D827E	unknown	Het
Myo1g	G	C	11: 6,458,243 (GRCm39)	L866V	probably damaging	Het
Myo3a	A	T	2: 22,468,170 (GRCm39)	M475L	probably benign	Het
Ncoa2	A	C	1: 13,244,590 (GRCm39)	L703V	probably damaging	Het
Ncoa4-ps	A	C	12: 119,225,023 (GRCm39)		noncoding transcript	Het
Nme6	T	A	9: 109,670,557 (GRCm39)	Y69*	probably null	Het
Nwd1	T	A	8: 73,397,714 (GRCm39)	M651K	probably benign	Het
Or4k15c	A	C	14: 50,322,003 (GRCm39)	I45S	probably damaging	Het
Orc2	A	T	1: 58,513,977 (GRCm39)	S298R	possibly damaging	Het
Oscp1	A	T	4: 125,981,522 (GRCm39)	E328V	probably damaging	Het
Pan2	T	C	10: 128,153,838 (GRCm39)	V1003A	probably damaging	Het
Pik3r4	T	C	9: 105,559,507 (GRCm39)	V1200A	possibly damaging	Het
Prl	T	C	13: 27,241,579 (GRCm39)		probably benign	Het
Ptprk	T	C	10: 28,351,232 (GRCm39)	V575A	probably benign	Het
Rflna	A	T	5: 125,088,469 (GRCm39)	S139C	probably damaging	Het
Robo1	T	C	16: 72,539,038 (GRCm39)	F27S	probably benign	Het
Shmt1	A	G	11: 60,688,308 (GRCm39)		probably benign	Het
Slc27a3	A	G	3: 90,296,477 (GRCm39)		probably null	Het
Slc6a5	T	C	7: 49,585,957 (GRCm39)	V425A	probably damaging	Het
Slc8a3	A	G	12: 81,361,265 (GRCm39)	V518A	possibly damaging	Het
Slco1a4	A	T	6: 141,785,357 (GRCm39)	Y78N	probably damaging	Het
Stt3b	A	T	9: 115,095,211 (GRCm39)	H273Q	probably damaging	Het
Tle6	T	A	10: 81,428,635 (GRCm39)	N431I	probably damaging	Het
Trim34b	C	A	7: 103,979,118 (GRCm39)	Q122K	possibly damaging	Het
Trio	C	A	15: 27,902,686 (GRCm39)	R258S	probably benign	Het
Ttc7	A	T	17: 87,600,306 (GRCm39)	D23V	probably damaging	Het
Ttn	A	T	2: 76,810,525 (GRCm39)	M1K	probably null	Het
Ufsp2	T	C	8: 46,447,126 (GRCm39)	V391A	probably benign	Het
Vps13c	T	C	9: 67,815,334 (GRCm39)	L990S	probably damaging	Het
Zfp108	G	T	7: 23,960,163 (GRCm39)	K251N	probably benign	Het
Zfp618	G	A	4: 63,017,519 (GRCm39)	M234I	probably benign	Het

Other mutations in Secisbp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01149:Secisbp2	APN	13	51,830,491 (GRCm39)	critical splice donor site	probably null
IGL01316:Secisbp2	APN	13	51,808,552 (GRCm39)	missense	probably benign	0.06
IGL02576:Secisbp2	APN	13	51,824,894 (GRCm39)	missense	possibly damaging	0.80
IGL02630:Secisbp2	APN	13	51,832,942 (GRCm39)	missense	possibly damaging	0.63
IGL02645:Secisbp2	APN	13	51,836,496 (GRCm39)	missense	probably damaging	1.00
IGL03107:Secisbp2	APN	13	51,806,793 (GRCm39)	critical splice donor site	probably null
R0208:Secisbp2	UTSW	13	51,833,881 (GRCm39)	missense	probably benign	0.26
R0453:Secisbp2	UTSW	13	51,837,361 (GRCm39)	missense	possibly damaging	0.91
R1220:Secisbp2	UTSW	13	51,810,941 (GRCm39)	missense	probably damaging	1.00
R1278:Secisbp2	UTSW	13	51,808,546 (GRCm39)	missense	probably damaging	1.00
R1439:Secisbp2	UTSW	13	51,833,759 (GRCm39)	splice site	probably benign
R1514:Secisbp2	UTSW	13	51,836,131 (GRCm39)	missense	possibly damaging	0.83
R1568:Secisbp2	UTSW	13	51,827,143 (GRCm39)	missense	possibly damaging	0.73
R1724:Secisbp2	UTSW	13	51,824,882 (GRCm39)	missense	probably benign
R2851:Secisbp2	UTSW	13	51,808,671 (GRCm39)	splice site	probably null
R2967:Secisbp2	UTSW	13	51,824,915 (GRCm39)	missense	probably benign	0.00
R3156:Secisbp2	UTSW	13	51,816,711 (GRCm39)	missense	probably benign	0.06
R4393:Secisbp2	UTSW	13	51,808,502 (GRCm39)	missense	probably damaging	1.00
R4719:Secisbp2	UTSW	13	51,806,768 (GRCm39)	missense	possibly damaging	0.96
R4953:Secisbp2	UTSW	13	51,836,063 (GRCm39)	missense	probably damaging	1.00
R5432:Secisbp2	UTSW	13	51,828,002 (GRCm39)	small deletion	probably benign
R5696:Secisbp2	UTSW	13	51,833,857 (GRCm39)	missense	probably damaging	1.00
R6007:Secisbp2	UTSW	13	51,819,395 (GRCm39)	missense	probably damaging	0.99
R6066:Secisbp2	UTSW	13	51,831,258 (GRCm39)	missense	probably benign	0.00
R6076:Secisbp2	UTSW	13	51,833,813 (GRCm39)	missense	probably damaging	0.98
R6164:Secisbp2	UTSW	13	51,833,896 (GRCm39)	missense	probably damaging	1.00
R6346:Secisbp2	UTSW	13	51,833,923 (GRCm39)	missense	probably damaging	0.99
R6367:Secisbp2	UTSW	13	51,836,177 (GRCm39)	missense	probably damaging	1.00
R6790:Secisbp2	UTSW	13	51,824,939 (GRCm39)	missense	probably benign	0.09
R6888:Secisbp2	UTSW	13	51,833,977 (GRCm39)	missense	probably benign	0.16
R7095:Secisbp2	UTSW	13	51,831,290 (GRCm39)	missense	probably benign	0.01
R7104:Secisbp2	UTSW	13	51,810,943 (GRCm39)	nonsense	probably null
R7261:Secisbp2	UTSW	13	51,836,498 (GRCm39)	missense	probably damaging	1.00
R7717:Secisbp2	UTSW	13	51,827,134 (GRCm39)	missense	probably benign	0.00
R7986:Secisbp2	UTSW	13	51,819,395 (GRCm39)	missense	probably damaging	0.99
R8021:Secisbp2	UTSW	13	51,819,664 (GRCm39)	makesense	probably null
R8496:Secisbp2	UTSW	13	51,819,383 (GRCm39)	missense	probably damaging	1.00
R8755:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8757:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8758:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8759:Secisbp2	UTSW	13	51,833,869 (GRCm39)	missense	possibly damaging	0.92
R8833:Secisbp2	UTSW	13	51,819,352 (GRCm39)	missense	probably benign	0.01
R8878:Secisbp2	UTSW	13	51,837,404 (GRCm39)	missense	probably benign	0.13
R9153:Secisbp2	UTSW	13	51,833,855 (GRCm39)	missense	possibly damaging	0.92
R9295:Secisbp2	UTSW	13	51,808,483 (GRCm39)	missense	probably damaging	1.00
R9528:Secisbp2	UTSW	13	51,810,979 (GRCm39)	missense	possibly damaging	0.57
R9562:Secisbp2	UTSW	13	51,837,320 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGGAACTCTGGCTTACTGTTG -3'
(R):5'- CCATGACGTTCAATCATCTTATTGC -3'

Sequencing Primer
(F):5'- GAACTCTGGCTTACTGTTGAAATTG -3'
(R):5'- GACAAGGATTCACTATGTGGCCC -3'

Posted On

2016-07-06