Mutagenetix > Incidental Mutation

Incidental Mutation 'R5233:Vmn2r42'

398113

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r42

Ensembl Gene

ENSMUSG00000070844

Gene Name

vomeronasal 2, receptor 42

Synonyms

V2r4

MMRRC Submission

042805-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R5233 (G1)

Quality Score

192

Status

Not validated

Chromosome

Chromosomal Location

8186264-8203319 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 8197837 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 261 (K261*)

Ref Sequence

ENSEMBL: ENSMUSP00000119761 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000086282] [ENSMUST00000142934] [ENSMUST00000146278]

AlphaFold

O35192

Predicted Effect

probably null
Transcript: ENSMUST00000086282
AA Change: K261*

SMART Domains

Protein: ENSMUSP00000083463
Gene: ENSMUSG00000070844
AA Change: K261*

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	59	71	N/A	INTRINSIC
Pfam:ANF_receptor	73	470	1.6e-33	PFAM
Pfam:NCD3G	512	565	8.1e-21	PFAM
Pfam:7tm_3	598	833	2.8e-55	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129936

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136957

Predicted Effect

probably null
Transcript: ENSMUST00000142934
AA Change: K261*

SMART Domains

Protein: ENSMUSP00000123451
Gene: ENSMUSG00000070844
AA Change: K261*

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	59	71	N/A	INTRINSIC
Pfam:ANF_receptor	73	469	7.4e-34	PFAM
Pfam:NCD3G	512	563	4.2e-16	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000146278
AA Change: K261*

SMART Domains

Protein: ENSMUSP00000119761
Gene: ENSMUSG00000070844
AA Change: K261*

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	59	71	N/A	INTRINSIC
Pfam:ANF_receptor	73	469	1.9e-33	PFAM
Pfam:NCD3G	512	565	6.7e-17	PFAM
Pfam:7tm_3	548	784	2e-78	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.9%

Validation Efficiency

100% (56/56)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9030619P08Rik	T	A	15: 75,301,801 (GRCm39)		noncoding transcript	Het
Aadat	A	G	8: 60,979,656 (GRCm39)	I173V	probably benign	Het
Acsl6	G	A	11: 54,216,432 (GRCm39)	V200I	possibly damaging	Het
Alms1	T	A	6: 85,633,353 (GRCm39)		probably null	Het
Arhgef17	A	T	7: 100,530,576 (GRCm39)	D1403E	possibly damaging	Het
Atp10b	A	G	11: 43,121,387 (GRCm39)	T1017A	probably benign	Het
Capg	C	T	6: 72,532,509 (GRCm39)	R25C	probably damaging	Het
Cd22	A	G	7: 30,576,959 (GRCm39)	I116T	probably damaging	Het
Cep135	AGTCTGCCTTTGG	A	5: 76,739,690 (GRCm39)		probably benign	Het
Ciita	A	T	16: 10,327,265 (GRCm39)	I277F	possibly damaging	Het
Col15a1	T	C	4: 47,296,112 (GRCm39)	V943A	possibly damaging	Het
Coq2	G	A	5: 100,805,698 (GRCm39)	H313Y	possibly damaging	Het
Csn3	C	T	5: 88,077,694 (GRCm39)	P67S	probably benign	Het
Csrnp3	A	G	2: 65,852,684 (GRCm39)	T359A	possibly damaging	Het
Cttnbp2nl	A	G	3: 104,912,357 (GRCm39)	L509P	probably damaging	Het
Dclk3	A	G	9: 111,297,749 (GRCm39)	D431G	probably benign	Het
Dtx3l	A	T	16: 35,753,608 (GRCm39)	C333S	possibly damaging	Het
Ear-ps2	G	A	14: 44,284,517 (GRCm39)		noncoding transcript	Het
Fam171a1	G	C	2: 3,179,390 (GRCm39)	G72A	probably damaging	Het
Fbxw17	T	C	13: 50,586,390 (GRCm39)		probably benign	Het
Fry	A	G	5: 150,393,185 (GRCm39)	D605G	possibly damaging	Het
Fyn	T	C	10: 39,405,936 (GRCm39)	F240S	probably benign	Het
Gcfc2	T	C	6: 81,930,271 (GRCm39)	L646P	probably damaging	Het
Gm5087	C	T	14: 13,158,788 (GRCm38)		noncoding transcript	Het
Got2	T	A	8: 96,602,477 (GRCm39)	N91I	probably benign	Het
Hspa4	C	T	11: 53,177,802 (GRCm39)	V103I	possibly damaging	Het
Itgad	A	G	7: 127,792,600 (GRCm39)		probably null	Het
Krt33a	A	G	11: 99,904,961 (GRCm39)	S182P	probably damaging	Het
Mcph1	T	C	8: 18,721,254 (GRCm39)	I694T	probably damaging	Het
Mmp15	T	C	8: 96,097,696 (GRCm39)	V502A	probably benign	Het
Mov10l1	T	C	15: 88,867,235 (GRCm39)	V23A	probably benign	Het
Myo9a	T	A	9: 59,817,900 (GRCm39)	N2322K	probably damaging	Het
Ndst4	A	G	3: 125,503,766 (GRCm39)	Y11C	probably damaging	Het
Nell1	T	C	7: 49,826,062 (GRCm39)	F199S	probably damaging	Het
Nup210	C	T	6: 91,003,951 (GRCm39)	V646M	probably damaging	Het
Nup98	A	T	7: 101,845,029 (GRCm39)	S13R	unknown	Het
Nxf1	T	C	19: 8,741,293 (GRCm39)	I54T	possibly damaging	Het
Or8b38	A	G	9: 37,973,446 (GRCm39)	T277A	probably damaging	Het
Pcdh10	C	A	3: 45,338,626 (GRCm39)	R928S	probably damaging	Het
Pou3f3	A	G	1: 42,737,438 (GRCm39)	N378S	probably benign	Het
Rfx6	T	A	10: 51,588,187 (GRCm39)	Y109*	probably null	Het
Rorc	T	A	3: 94,304,632 (GRCm39)	V339D	probably benign	Het
Scin	T	A	12: 40,127,558 (GRCm39)	I411F	probably benign	Het
Serpind1	A	G	16: 17,154,758 (GRCm39)	Y195C	probably damaging	Het
Tas2r117	T	C	6: 132,780,585 (GRCm39)	V241A	possibly damaging	Het
Tet3	T	A	6: 83,363,045 (GRCm39)	E709V	probably damaging	Het
Trbc1	T	A	6: 41,515,383 (GRCm39)		probably benign	Het
Vmn1r212	C	A	13: 23,067,304 (GRCm39)	G343V	unknown	Het
Xrcc5	T	A	1: 72,379,209 (GRCm39)	L438Q	probably damaging	Het
Zfp142	T	C	1: 74,624,608 (GRCm39)	N72S	probably damaging	Het
Zfp292	A	T	4: 34,809,755 (GRCm39)	S1096R	probably damaging	Het

Other mutations in Vmn2r42

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02444:Vmn2r42	APN	7	8,187,312 (GRCm39)	missense	probably damaging	0.99
IGL02793:Vmn2r42	APN	7	8,197,852 (GRCm39)	missense	probably benign	0.00
IGL02875:Vmn2r42	APN	7	8,197,852 (GRCm39)	missense	probably benign	0.00
R1743:Vmn2r42	UTSW	7	8,187,264 (GRCm39)	missense	probably benign	0.06
R3943:Vmn2r42	UTSW	7	8,197,779 (GRCm39)	missense	possibly damaging	0.93
R4117:Vmn2r42	UTSW	7	8,197,839 (GRCm39)	missense	probably damaging	1.00
R4760:Vmn2r42	UTSW	7	8,187,276 (GRCm39)	missense	probably damaging	1.00
R6245:Vmn2r42	UTSW	7	8,195,733 (GRCm39)	missense	probably damaging	1.00
R6683:Vmn2r42	UTSW	7	8,187,224 (GRCm39)	missense	probably damaging	0.98
R6709:Vmn2r42	UTSW	7	8,195,618 (GRCm39)	missense	probably benign	0.09
R7396:Vmn2r42	UTSW	7	8,195,641 (GRCm39)	missense	probably benign	0.00
R7450:Vmn2r42	UTSW	7	8,187,220 (GRCm39)	missense	probably benign	0.00
R7583:Vmn2r42	UTSW	7	8,197,740 (GRCm39)	nonsense	probably null
R7973:Vmn2r42	UTSW	7	8,197,872 (GRCm39)	missense	probably benign	0.03
R8777:Vmn2r42	UTSW	7	8,195,692 (GRCm39)	missense	probably benign	0.14
R8777-TAIL:Vmn2r42	UTSW	7	8,195,692 (GRCm39)	missense	probably benign	0.14
R8900:Vmn2r42	UTSW	7	8,197,792 (GRCm39)	missense	probably benign	0.15
R8972:Vmn2r42	UTSW	7	8,187,331 (GRCm39)	missense	probably damaging	1.00
R9335:Vmn2r42	UTSW	7	8,197,758 (GRCm39)	missense	probably damaging	0.99
R9453:Vmn2r42	UTSW	7	8,187,295 (GRCm39)	missense	probably benign	0.39

Predicted Primers

PCR Primer
(F):5'- AGCCAGAAATCTCACCATGG -3'
(R):5'- TGGCAATGGTCTCCTTCATAC -3'

Sequencing Primer
(F):5'- AGTGATCCATAGAATGTGTCATGAC -3'
(R):5'- CCTTGTCATCCCAGATGAT -3'

Posted On

2016-07-06