Incidental Mutation 'R5180:Dhx34'
| ID |
399717 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dhx34
|
| Ensembl Gene |
ENSMUSG00000006019 |
| Gene Name |
DExH-box helicase 34 |
| Synonyms |
Ddx34, 1200013B07Rik, 1810012L18Rik |
| MMRRC Submission |
042760-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.409)
|
| Stock # |
R5180 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
15931145-15956005 bp(-) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
C to A
at 15939405 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glycine to Stop codon
at position 663
(G663*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000126915
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000094816]
[ENSMUST00000118795]
[ENSMUST00000119102]
[ENSMUST00000121123]
[ENSMUST00000163968]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably null
Transcript: ENSMUST00000094816
AA Change: G663*
|
| SMART Domains |
Protein: ENSMUSP00000092410
Gene: ENSMUSG00000006019
AA Change: G663*
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
131 |
N/A |
INTRINSIC |
|
DEXDc
|
150 |
343 |
7.73e-28 |
SMART |
|
HELICc
|
400 |
498 |
4.31e-17 |
SMART |
|
low complexity region
|
542 |
553 |
N/A |
INTRINSIC |
|
HA2
|
558 |
648 |
3.35e-21 |
SMART |
|
Pfam:OB_NTP_bind
|
687 |
911 |
2.6e-24 |
PFAM |
|
low complexity region
|
953 |
971 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1121 |
1144 |
7.89e0 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000118795
AA Change: G663*
|
| SMART Domains |
Protein: ENSMUSP00000112865
Gene: ENSMUSG00000006019
AA Change: G663*
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
131 |
N/A |
INTRINSIC |
|
DEXDc
|
150 |
343 |
7.73e-28 |
SMART |
|
HELICc
|
400 |
498 |
4.31e-17 |
SMART |
|
low complexity region
|
542 |
553 |
N/A |
INTRINSIC |
|
HA2
|
558 |
648 |
3.35e-21 |
SMART |
|
Pfam:OB_NTP_bind
|
687 |
911 |
7.5e-17 |
PFAM |
|
low complexity region
|
953 |
971 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1121 |
1144 |
7.89e0 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000119102
AA Change: G663*
|
| SMART Domains |
Protein: ENSMUSP00000113393
Gene: ENSMUSG00000006019
AA Change: G663*
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
131 |
N/A |
INTRINSIC |
|
DEXDc
|
150 |
343 |
7.73e-28 |
SMART |
|
HELICc
|
400 |
498 |
4.31e-17 |
SMART |
|
low complexity region
|
542 |
553 |
N/A |
INTRINSIC |
|
HA2
|
558 |
648 |
3.35e-21 |
SMART |
|
Pfam:OB_NTP_bind
|
687 |
911 |
7.5e-17 |
PFAM |
|
low complexity region
|
953 |
971 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1121 |
1144 |
7.89e0 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000121123
AA Change: G663*
|
| SMART Domains |
Protein: ENSMUSP00000113673
Gene: ENSMUSG00000006019
AA Change: G663*
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
131 |
N/A |
INTRINSIC |
|
DEXDc
|
150 |
343 |
7.73e-28 |
SMART |
|
HELICc
|
400 |
498 |
4.31e-17 |
SMART |
|
low complexity region
|
542 |
553 |
N/A |
INTRINSIC |
|
HA2
|
558 |
648 |
3.35e-21 |
SMART |
|
Pfam:OB_NTP_bind
|
687 |
911 |
7.5e-17 |
PFAM |
|
low complexity region
|
953 |
971 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1121 |
1144 |
7.89e0 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128452
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133518
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000163968
AA Change: G663*
|
| SMART Domains |
Protein: ENSMUSP00000126915
Gene: ENSMUSG00000006019
AA Change: G663*
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
131 |
N/A |
INTRINSIC |
|
DEXDc
|
150 |
343 |
7.73e-28 |
SMART |
|
HELICc
|
400 |
498 |
4.31e-17 |
SMART |
|
low complexity region
|
542 |
553 |
N/A |
INTRINSIC |
|
HA2
|
558 |
648 |
3.35e-21 |
SMART |
|
Pfam:OB_NTP_bind
|
687 |
911 |
6.4e-18 |
PFAM |
|
low complexity region
|
953 |
971 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1121 |
1144 |
7.89e0 |
SMART |
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.2%
|
| Validation Efficiency |
97% (60/62) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a member of this family. It is mapped to the glioma 19q tumor suppressor region and is a tumor suppressor candidate gene. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 59 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca13 |
A |
G |
11: 9,416,510 (GRCm39) |
T4091A |
probably benign |
Het |
| Adgrv1 |
G |
A |
13: 81,431,535 (GRCm39) |
|
probably benign |
Het |
| Ago3 |
C |
T |
4: 126,261,544 (GRCm39) |
V435I |
probably benign |
Het |
| Akap10 |
C |
T |
11: 61,807,015 (GRCm39) |
A72T |
probably damaging |
Het |
| Ampd2 |
G |
T |
3: 107,986,358 (GRCm39) |
Q273K |
probably benign |
Het |
| Ankrd35 |
C |
A |
3: 96,587,789 (GRCm39) |
H109Q |
probably damaging |
Het |
| Atpaf2 |
A |
G |
11: 60,296,695 (GRCm39) |
L153S |
possibly damaging |
Het |
| C1qtnf7 |
G |
A |
5: 43,773,156 (GRCm39) |
V152M |
probably benign |
Het |
| Ccnb1 |
C |
G |
13: 100,918,283 (GRCm39) |
Q121H |
possibly damaging |
Het |
| Cep295 |
C |
T |
9: 15,243,416 (GRCm39) |
C1680Y |
probably benign |
Het |
| Cyp4f15 |
A |
T |
17: 32,909,714 (GRCm39) |
I104F |
probably benign |
Het |
| Daam1 |
A |
G |
12: 71,993,899 (GRCm39) |
N434S |
unknown |
Het |
| Dab2ip |
C |
T |
2: 35,610,503 (GRCm39) |
P782L |
possibly damaging |
Het |
| Dnah7a |
T |
C |
1: 53,462,446 (GRCm39) |
D3715G |
probably damaging |
Het |
| Dnajc11 |
C |
T |
4: 152,054,396 (GRCm39) |
R201C |
probably damaging |
Het |
| Erf |
A |
T |
7: 24,945,690 (GRCm39) |
I27N |
probably damaging |
Het |
| Fbxl7 |
T |
A |
15: 26,543,507 (GRCm39) |
Y380F |
probably damaging |
Het |
| Gm3336 |
A |
G |
8: 71,173,110 (GRCm39) |
|
probably benign |
Het |
| Gm4787 |
G |
C |
12: 81,424,604 (GRCm39) |
T518S |
probably benign |
Het |
| Gm5134 |
T |
C |
10: 75,812,200 (GRCm39) |
Y152H |
probably damaging |
Het |
| Gm6899 |
A |
G |
11: 26,543,795 (GRCm39) |
|
probably benign |
Het |
| Gna11 |
T |
C |
10: 81,380,707 (GRCm39) |
K19E |
probably benign |
Het |
| Gpr15 |
C |
A |
16: 58,538,248 (GRCm39) |
L280F |
probably benign |
Het |
| Grhl3 |
T |
A |
4: 135,286,415 (GRCm39) |
K89* |
probably null |
Het |
| Ino80d |
C |
A |
1: 63,125,488 (GRCm39) |
|
probably benign |
Het |
| Irak3 |
T |
G |
10: 119,981,687 (GRCm39) |
K406T |
probably damaging |
Het |
| Kif15 |
G |
A |
9: 122,828,275 (GRCm39) |
C634Y |
probably damaging |
Het |
| Lin9 |
T |
A |
1: 180,496,763 (GRCm39) |
L351I |
probably benign |
Het |
| Macrod2 |
A |
T |
2: 140,237,636 (GRCm39) |
E14V |
probably damaging |
Het |
| Matn3 |
T |
A |
12: 9,005,374 (GRCm39) |
D261E |
probably benign |
Het |
| Mdga1 |
A |
T |
17: 30,076,710 (GRCm39) |
|
probably benign |
Het |
| Natd1 |
G |
T |
11: 60,804,482 (GRCm39) |
R24S |
probably benign |
Het |
| Ncapd3 |
T |
A |
9: 26,962,941 (GRCm39) |
D415E |
possibly damaging |
Het |
| Or5b101 |
A |
T |
19: 13,004,776 (GRCm39) |
S306T |
probably benign |
Het |
| Parp9 |
T |
A |
16: 35,774,106 (GRCm39) |
Y81* |
probably null |
Het |
| Pde4d |
A |
G |
13: 109,877,007 (GRCm39) |
N73S |
probably benign |
Het |
| Pigb |
A |
T |
9: 72,941,872 (GRCm39) |
I129N |
probably damaging |
Het |
| Plxnb1 |
C |
A |
9: 108,940,761 (GRCm39) |
|
probably null |
Het |
| Ppfibp1 |
G |
T |
6: 146,928,819 (GRCm39) |
R813L |
probably damaging |
Het |
| Ramp3 |
T |
A |
11: 6,608,619 (GRCm39) |
L16Q |
unknown |
Het |
| Slc35a4 |
T |
C |
18: 36,815,688 (GRCm39) |
S173P |
probably benign |
Het |
| Slc41a1 |
T |
C |
1: 131,772,115 (GRCm39) |
V415A |
probably damaging |
Het |
| Smarcc2 |
CCAGCAGCAGCAGCAGCAGC |
CCAGCAGCAGCAGCAGC |
10: 128,323,231 (GRCm39) |
|
probably benign |
Het |
| Snph |
G |
A |
2: 151,442,307 (GRCm39) |
R43W |
probably benign |
Het |
| Sptan1 |
A |
T |
2: 29,883,736 (GRCm39) |
|
probably benign |
Het |
| Supt20 |
C |
A |
3: 54,616,506 (GRCm39) |
H254Q |
probably benign |
Het |
| Taar7a |
A |
G |
10: 23,869,046 (GRCm39) |
C112R |
probably damaging |
Het |
| Tbc1d4 |
T |
C |
14: 101,745,008 (GRCm39) |
Y206C |
probably damaging |
Het |
| Tecta |
A |
G |
9: 42,248,504 (GRCm39) |
V1961A |
probably damaging |
Het |
| Tgfbr1 |
T |
A |
4: 47,383,948 (GRCm39) |
Y30* |
probably null |
Het |
| Tmem71 |
C |
T |
15: 66,427,063 (GRCm39) |
S44N |
probably benign |
Het |
| Tnfrsf1b |
C |
A |
4: 144,954,067 (GRCm39) |
C94F |
probably damaging |
Het |
| Ttn |
A |
G |
2: 76,579,740 (GRCm39) |
Y23718H |
probably damaging |
Het |
| Ube2i |
T |
C |
17: 25,484,268 (GRCm39) |
|
probably benign |
Het |
| Vmn2r16 |
G |
T |
5: 109,478,391 (GRCm39) |
V49F |
probably benign |
Het |
| Vps45 |
A |
G |
3: 95,953,683 (GRCm39) |
I223T |
possibly damaging |
Het |
| Zfp955a |
T |
C |
17: 33,461,592 (GRCm39) |
Y180C |
probably benign |
Het |
| Zhx1 |
C |
G |
15: 57,917,470 (GRCm39) |
G259R |
probably damaging |
Het |
| Zscan18 |
T |
A |
7: 12,509,216 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Dhx34 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00950:Dhx34
|
APN |
7 |
15,933,751 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01090:Dhx34
|
APN |
7 |
15,950,181 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01397:Dhx34
|
APN |
7 |
15,944,468 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01637:Dhx34
|
APN |
7 |
15,939,398 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01684:Dhx34
|
APN |
7 |
15,937,204 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02147:Dhx34
|
APN |
7 |
15,937,928 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02223:Dhx34
|
APN |
7 |
15,932,584 (GRCm39) |
missense |
probably benign |
0.10 |
|
R0255:Dhx34
|
UTSW |
7 |
15,939,917 (GRCm39) |
missense |
probably benign |
0.32 |
|
R0514:Dhx34
|
UTSW |
7 |
15,944,462 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0919:Dhx34
|
UTSW |
7 |
15,935,883 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1075:Dhx34
|
UTSW |
7 |
15,952,274 (GRCm39) |
missense |
probably benign |
0.06 |
|
R1077:Dhx34
|
UTSW |
7 |
15,952,293 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4197:Dhx34
|
UTSW |
7 |
15,937,651 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4721:Dhx34
|
UTSW |
7 |
15,931,307 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R4856:Dhx34
|
UTSW |
7 |
15,949,367 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R4868:Dhx34
|
UTSW |
7 |
15,933,727 (GRCm39) |
missense |
probably benign |
0.10 |
|
R5134:Dhx34
|
UTSW |
7 |
15,952,175 (GRCm39) |
missense |
possibly damaging |
0.57 |
|
R5560:Dhx34
|
UTSW |
7 |
15,952,466 (GRCm39) |
missense |
probably benign |
0.34 |
|
R5588:Dhx34
|
UTSW |
7 |
15,932,825 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6981:Dhx34
|
UTSW |
7 |
15,949,255 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R6994:Dhx34
|
UTSW |
7 |
15,937,799 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7226:Dhx34
|
UTSW |
7 |
15,932,801 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7262:Dhx34
|
UTSW |
7 |
15,937,623 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7288:Dhx34
|
UTSW |
7 |
15,949,361 (GRCm39) |
missense |
probably benign |
0.08 |
|
R7381:Dhx34
|
UTSW |
7 |
15,949,373 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7469:Dhx34
|
UTSW |
7 |
15,950,364 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7709:Dhx34
|
UTSW |
7 |
15,946,789 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R7862:Dhx34
|
UTSW |
7 |
15,944,448 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8495:Dhx34
|
UTSW |
7 |
15,952,472 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8885:Dhx34
|
UTSW |
7 |
15,950,376 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9246:Dhx34
|
UTSW |
7 |
15,937,162 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0020:Dhx34
|
UTSW |
7 |
15,939,917 (GRCm39) |
missense |
probably benign |
0.32 |
|
Z1176:Dhx34
|
UTSW |
7 |
15,952,569 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GCTTTTGCCACCTTGCCAAG -3'
(R):5'- TCATCAGTGGCAGTTCAGG -3'
Sequencing Primer
(F):5'- AAGGCTGCCCCAGTCCTG -3'
(R):5'- TAACCCAGCATGCTGTCTGG -3'
|
| Posted On |
2016-07-06 |
Incidental Mutation