Mutagenetix > Incidental Mutation

Incidental Mutation 'R5193:Bpifc'

399860

Institutional Source

Beutler Lab

Gene Symbol

Bpifc

Ensembl Gene

ENSMUSG00000050108

Gene Name

BPI fold containing family C

Synonyms

Bpil2

MMRRC Submission

042769-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.089) question?

Stock #

R5193 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

85795555-85847724 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 85836497 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 3 (T3A)

Ref Sequence

ENSEMBL: ENSMUSP00000100941 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000061699] [ENSMUST00000105304]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000061699
AA Change: T3A

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000063107
Gene: ENSMUSG00000050108
AA Change: T3A

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
BPI1	33	257	8.89e-23	SMART
BPI2	272	474	2.29e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105304
AA Change: T3A

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000100941
Gene: ENSMUSG00000050108
AA Change: T3A

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
SCOP:d1ewfa1	26	82	2e-13	SMART
Blast:BPI1	33	82	7e-27	BLAST

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abhd12	A	T	2: 150,677,226 (GRCm39)	*56R	probably null	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Arfgap3	C	T	15: 83,216,898 (GRCm39)	A156T	probably benign	Het
Ccdc7a	T	A	8: 129,715,278 (GRCm39)	I269L	probably benign	Het
Cd151	A	G	7: 141,050,606 (GRCm39)	Y253C	probably damaging	Het
Cenpl	C	A	1: 160,911,037 (GRCm39)	S328*	probably null	Het
Cfl1	T	A	19: 5,542,580 (GRCm39)	V20D	probably damaging	Het
Clec14a	A	G	12: 58,315,400 (GRCm39)	L74P	probably damaging	Het
Cnn1	A	T	9: 22,019,132 (GRCm39)	D196V	probably damaging	Het
Cst13	C	A	2: 148,670,143 (GRCm39)	C104*	probably null	Het
Det1	A	G	7: 78,493,302 (GRCm39)	V234A	probably damaging	Het
Efnb2	A	G	8: 8,673,162 (GRCm39)	M165T	probably damaging	Het
Fbxo10	T	A	4: 45,051,573 (GRCm39)	K339*	probably null	Het
Fnta	A	T	8: 26,501,246 (GRCm39)		probably null	Het
Fsip2	A	T	2: 82,813,338 (GRCm39)	Y3219F	possibly damaging	Het
Gprin2	C	T	14: 33,916,832 (GRCm39)	V313M	possibly damaging	Het
Hars1	A	G	18: 36,900,358 (GRCm39)	L448S	possibly damaging	Het
Hipk3	A	G	2: 104,260,345 (GRCm39)	I1166T	possibly damaging	Het
Il31ra	T	C	13: 112,660,864 (GRCm39)	E602G	probably benign	Het
Kctd15	A	G	7: 34,344,282 (GRCm39)	L123P	probably damaging	Het
Kifbp	T	C	10: 62,395,175 (GRCm39)	D489G	possibly damaging	Het
Krt1	C	A	15: 101,754,357 (GRCm39)	S631I	unknown	Het
Lancl1	T	A	1: 67,060,173 (GRCm39)	Y84F	probably benign	Het
Lcor	A	G	19: 41,570,969 (GRCm39)	D54G	probably damaging	Het
Mafa	G	T	15: 75,619,666 (GRCm39)	P36T	unknown	Het
Magi2	G	A	5: 20,563,970 (GRCm39)		probably null	Het
Mcm9	T	A	10: 53,492,134 (GRCm39)	I396F	probably damaging	Het
Mrgprh	T	C	17: 13,095,942 (GRCm39)	F61L	probably damaging	Het
Or10g1b	A	G	14: 52,628,069 (GRCm39)	W54R	probably benign	Het
Or1e16	TAGCGGTCGTA	T	11: 73,286,479 (GRCm39)		probably null	Het
Or1e16	AGCGGTCGTAGGC	AGC	11: 73,286,480 (GRCm39)		probably null	Het
Or51a7	T	A	7: 102,615,143 (GRCm39)	F279I	possibly damaging	Het
Or5w17	A	T	2: 87,583,448 (GRCm39)	D296E	possibly damaging	Het
Pcsk5	T	A	19: 17,542,174 (GRCm39)	T806S	possibly damaging	Het
Pigc	T	C	1: 161,798,465 (GRCm39)	I149T	possibly damaging	Het
Pou5f2	C	A	13: 78,173,083 (GRCm39)	N8K	probably benign	Het
Pou6f2	T	C	13: 18,300,129 (GRCm39)		probably benign	Het
Prl3d2	T	A	13: 27,306,312 (GRCm39)	M13K	possibly damaging	Het
Pzp	T	C	6: 128,479,297 (GRCm39)	N619D	probably benign	Het
Rnps1	G	A	17: 24,637,517 (GRCm39)	S53N	probably benign	Het
Scaf8	C	G	17: 3,240,440 (GRCm39)	A604G	probably benign	Het
Scn10a	T	C	9: 119,438,721 (GRCm39)	N1716S	probably damaging	Het
Slc22a30	G	A	19: 8,321,757 (GRCm39)	Q436*	probably null	Het
Slc34a1	A	G	13: 24,003,845 (GRCm39)		probably null	Het
Syne2	A	G	12: 76,141,194 (GRCm39)	D6102G	probably damaging	Het
Tbc1d16	A	T	11: 119,049,646 (GRCm39)	D283E	probably benign	Het
Tet1	T	C	10: 62,674,026 (GRCm39)	D1350G	probably benign	Het
Trpa1	A	G	1: 14,946,141 (GRCm39)	Y997H	possibly damaging	Het
Tyro3	T	C	2: 119,640,998 (GRCm39)	L494P	probably damaging	Het
Uba6	G	T	5: 86,272,281 (GRCm39)	Q803K	probably benign	Het
Vgll2	T	A	10: 51,904,088 (GRCm39)	L317Q	possibly damaging	Het
Wdr62	A	T	7: 29,964,592 (GRCm39)	I384N	probably damaging	Het
Wdtc1	G	A	4: 133,021,678 (GRCm39)	R619*	probably null	Het
Xkr6	A	G	14: 64,056,356 (GRCm39)	D89G	possibly damaging	Het

Other mutations in Bpifc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00264:Bpifc	APN	10	85,796,392 (GRCm39)	missense	possibly damaging	0.85
IGL01474:Bpifc	APN	10	85,836,503 (GRCm39)	start codon destroyed	probably damaging	0.98
IGL02437:Bpifc	APN	10	85,824,595 (GRCm39)	missense	probably damaging	1.00
R0689:Bpifc	UTSW	10	85,796,411 (GRCm39)	splice site	probably benign
R1205:Bpifc	UTSW	10	85,817,168 (GRCm39)	missense	probably damaging	1.00
R1524:Bpifc	UTSW	10	85,813,599 (GRCm39)	missense	probably benign	0.01
R2033:Bpifc	UTSW	10	85,836,496 (GRCm39)	missense	possibly damaging	0.88
R3103:Bpifc	UTSW	10	85,829,286 (GRCm39)	missense	probably damaging	1.00
R3609:Bpifc	UTSW	10	85,836,502 (GRCm39)	start codon destroyed	probably null	1.00
R3874:Bpifc	UTSW	10	85,827,118 (GRCm39)	missense	probably benign
R4728:Bpifc	UTSW	10	85,827,063 (GRCm39)	missense	possibly damaging	0.50
R5079:Bpifc	UTSW	10	85,817,168 (GRCm39)	missense	probably damaging	1.00
R6280:Bpifc	UTSW	10	85,813,576 (GRCm39)	missense	probably benign	0.02
R6291:Bpifc	UTSW	10	85,812,122 (GRCm39)	missense	probably damaging	1.00
R6945:Bpifc	UTSW	10	85,815,078 (GRCm39)	missense	probably benign	0.00
R7288:Bpifc	UTSW	10	85,824,585 (GRCm39)	missense	possibly damaging	0.95
R7310:Bpifc	UTSW	10	85,798,891 (GRCm39)	missense	probably damaging	1.00
R7463:Bpifc	UTSW	10	85,815,198 (GRCm39)	missense	probably benign	0.00
R7807:Bpifc	UTSW	10	85,812,114 (GRCm39)	missense	possibly damaging	0.80
R8004:Bpifc	UTSW	10	85,815,148 (GRCm39)	missense	probably benign
R8225:Bpifc	UTSW	10	85,836,431 (GRCm39)	missense	probably benign	0.00
R8284:Bpifc	UTSW	10	85,836,413 (GRCm39)	missense	probably benign	0.00
R8364:Bpifc	UTSW	10	85,797,891 (GRCm39)	missense	probably damaging	0.99
R8770:Bpifc	UTSW	10	85,801,129 (GRCm39)	missense	probably damaging	1.00
R9427:Bpifc	UTSW	10	85,812,129 (GRCm39)	missense	probably benign
R9482:Bpifc	UTSW	10	85,815,118 (GRCm39)	missense	possibly damaging	0.68
Z1176:Bpifc	UTSW	10	85,801,092 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ACATCCATGCAGGTAGACCTC -3'
(R):5'- TGACTCCTGAATGGATGCATAAG -3'

Sequencing Primer
(F):5'- CATGCAGGTAGACCTCAGATCTG -3'
(R):5'- CCTGAATGGATGCATAAGTGGGTC -3'

Posted On

2016-07-06