Mutagenetix > Incidental Mutation

Incidental Mutation 'R5196:Amigo2'

400279

Institutional Source

Beutler Lab

Gene Symbol

Amigo2

Ensembl Gene

ENSMUSG00000048218

Gene Name

adhesion molecule with Ig like domain 2

Synonyms

MMRRC Submission

042772-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.183) question?

Stock #

R5196 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

97142006-97145168 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 97143942 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 160 (F160S)

Ref Sequence

ENSEMBL: ENSMUSP00000155019 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053106] [ENSMUST00000059433] [ENSMUST00000229890]

AlphaFold

Q80ZD9

Predicted Effect

probably damaging
Transcript: ENSMUST00000053106
AA Change: F160S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000059913
Gene: ENSMUSG00000048218
AA Change: F160S

Domain	Start	End	E-Value	Type
signal peptide	1	38	N/A	INTRINSIC
LRRNT	39	71	7e-1	SMART
LRR	91	114	2.63e0	SMART
LRR	115	138	6.96e0	SMART
LRR_TYP	139	162	4.47e-3	SMART
LRR	163	186	1.07e0	SMART
LRR	190	214	1.06e2	SMART
LRRCT	227	282	4.74e-3	SMART
IGc2	300	369	9.34e-4	SMART
transmembrane domain	397	419	N/A	INTRINSIC
low complexity region	435	445	N/A	INTRINSIC
low complexity region	501	512	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000059433

SMART Domains

Protein: ENSMUSP00000055485
Gene: ENSMUSG00000044250

Domain	Start	End	E-Value	Type
Pfam:PC-Esterase	1	254	5.1e-53	PFAM
low complexity region	295	338	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226615

Predicted Effect

probably damaging
Transcript: ENSMUST00000229890
AA Change: F160S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Meta Mutation Damage Score

0.9378

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.3%

Validation Efficiency

100% (62/62)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700001O22Rik	T	C	2: 30,686,450 (GRCm39)	T281A	possibly damaging	Het
4930503B20Rik	A	G	3: 146,352,018 (GRCm39)		probably benign	Het
6330409D20Rik	T	A	2: 32,630,552 (GRCm39)		probably benign	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Arcn1	A	T	9: 44,671,324 (GRCm39)	L68M	probably damaging	Het
Arhgef25	A	G	10: 127,020,978 (GRCm39)	S303P	probably damaging	Het
Asph	A	T	4: 9,607,830 (GRCm39)	S163T	probably damaging	Het
Birc6	T	C	17: 74,913,136 (GRCm39)		probably benign	Het
Bltp3a	A	G	17: 28,075,737 (GRCm39)	I5V	probably benign	Het
Ccm2	G	A	11: 6,511,181 (GRCm39)		probably benign	Het
Cdc42bpa	T	C	1: 179,899,978 (GRCm39)	V431A	probably benign	Het
Cdh20	T	A	1: 110,065,730 (GRCm39)	M668K	probably damaging	Het
Cfap43	A	T	19: 47,814,364 (GRCm39)	W157R	probably damaging	Het
Chrm5	T	C	2: 112,310,729 (GRCm39)	Y129C	probably damaging	Het
Chrna5	A	G	9: 54,913,803 (GRCm39)	I421V	possibly damaging	Het
Clk1	T	A	1: 58,453,772 (GRCm39)	T301S	probably benign	Het
Col6a3	G	T	1: 90,744,260 (GRCm39)		probably null	Het
Eml2	G	A	7: 18,935,088 (GRCm39)	V432I	probably damaging	Het
Fbxw19	T	C	9: 109,313,496 (GRCm39)	Y234C	probably benign	Het
Fgd4	T	A	16: 16,302,006 (GRCm39)	N183I	probably benign	Het
Fnip2	T	C	3: 79,479,845 (GRCm39)		probably benign	Het
Gask1a	T	G	9: 121,794,727 (GRCm39)	S294A	probably benign	Het
Gm9847	T	A	12: 14,545,016 (GRCm39)		noncoding transcript	Het
H2-T23	A	G	17: 36,343,499 (GRCm39)		probably null	Het
Hdlbp	T	C	1: 93,347,915 (GRCm39)	E613G	probably damaging	Het
Kat6a	G	A	8: 23,401,729 (GRCm39)	R366H	probably damaging	Het
Kctd4	A	G	14: 76,200,127 (GRCm39)	T33A	probably benign	Het
Klrb1c	T	A	6: 128,757,262 (GRCm39)	S268C	probably benign	Het
Lgr6	C	T	1: 134,921,748 (GRCm39)	A199T	probably damaging	Het
Lrrfip1	A	G	1: 91,042,330 (GRCm39)	E245G	probably damaging	Het
Mast3	A	T	8: 71,240,889 (GRCm39)	I220N	probably damaging	Het
Mfap3	A	G	11: 57,420,639 (GRCm39)	T207A	probably damaging	Het
Mtdh	G	T	15: 34,118,150 (GRCm39)	K75N	probably damaging	Het
Mybpc1	A	G	10: 88,372,213 (GRCm39)	Y806H	probably damaging	Het
Ntng1	T	C	3: 109,842,299 (GRCm39)	D158G	probably damaging	Het
Odr4	T	A	1: 150,258,140 (GRCm39)	D165V	probably damaging	Het
Or5d46	A	G	2: 88,170,092 (GRCm39)	Y61C	possibly damaging	Het
Or6c216	T	A	10: 129,678,650 (GRCm39)	D87V	possibly damaging	Het
Pask	A	G	1: 93,237,805 (GRCm39)		probably benign	Het
Pif1	G	T	9: 65,495,374 (GRCm39)	A95S	probably benign	Het
Plppr2	T	C	9: 21,852,428 (GRCm39)	F104S	probably damaging	Het
Prmt9	G	A	8: 78,291,626 (GRCm39)	V333M	probably benign	Het
Pten	A	T	19: 32,792,897 (GRCm39)	M239L	probably benign	Het
Rb1cc1	A	G	1: 6,304,454 (GRCm39)	D67G	probably damaging	Het
Reg2	T	A	6: 78,382,530 (GRCm39)	L12*	probably null	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Slc5a7	C	A	17: 54,588,750 (GRCm39)		probably null	Het
Tcaf3	G	T	6: 42,570,649 (GRCm39)	R368S	probably benign	Het
Tfcp2	A	G	15: 100,418,595 (GRCm39)	V189A	probably damaging	Het
Wdr12	T	C	1: 60,126,243 (GRCm39)	S191G	probably damaging	Het
Zfp536	G	A	7: 37,180,185 (GRCm39)	R807W	probably damaging	Het
Zfp647	G	A	15: 76,796,285 (GRCm39)	P125L	probably damaging	Het

Other mutations in Amigo2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00587:Amigo2	APN	15	97,143,327 (GRCm39)	missense	possibly damaging	0.84
IGL01451:Amigo2	APN	15	97,143,107 (GRCm39)	missense	probably benign	0.22
IGL01510:Amigo2	APN	15	97,142,962 (GRCm39)	missense	probably benign
IGL02496:Amigo2	APN	15	97,143,494 (GRCm39)	nonsense	probably null
IGL02720:Amigo2	APN	15	97,143,578 (GRCm39)	nonsense	probably null
R0288:Amigo2	UTSW	15	97,143,560 (GRCm39)	missense	probably damaging	1.00
R0377:Amigo2	UTSW	15	97,144,261 (GRCm39)	missense	possibly damaging	0.93
R0696:Amigo2	UTSW	15	97,143,855 (GRCm39)	missense	probably benign	0.00
R1188:Amigo2	UTSW	15	97,143,594 (GRCm39)	missense	probably benign	0.37
R1639:Amigo2	UTSW	15	97,143,879 (GRCm39)	missense	probably benign	0.10
R3076:Amigo2	UTSW	15	97,143,315 (GRCm39)	missense	probably damaging	0.98
R3837:Amigo2	UTSW	15	97,143,196 (GRCm39)	missense	probably damaging	0.99
R4378:Amigo2	UTSW	15	97,143,859 (GRCm39)	missense	possibly damaging	0.69
R5698:Amigo2	UTSW	15	97,143,607 (GRCm39)	nonsense	probably null
R6191:Amigo2	UTSW	15	97,143,419 (GRCm39)	missense	probably benign	0.42
R6326:Amigo2	UTSW	15	97,143,256 (GRCm39)	missense	probably benign	0.00
R6738:Amigo2	UTSW	15	97,143,345 (GRCm39)	missense	possibly damaging	0.82
R7102:Amigo2	UTSW	15	97,143,741 (GRCm39)	missense	probably damaging	1.00
R7253:Amigo2	UTSW	15	97,142,956 (GRCm39)	missense	probably benign	0.03
R7615:Amigo2	UTSW	15	97,143,223 (GRCm39)	missense	probably damaging	1.00
R8269:Amigo2	UTSW	15	97,144,112 (GRCm39)	missense	possibly damaging	0.84
R8304:Amigo2	UTSW	15	97,144,038 (GRCm39)	missense	probably damaging	1.00
R8333:Amigo2	UTSW	15	97,143,166 (GRCm39)	missense	probably damaging	1.00
R8888:Amigo2	UTSW	15	97,143,389 (GRCm39)	missense	probably damaging	1.00
R8895:Amigo2	UTSW	15	97,143,389 (GRCm39)	missense	probably damaging	1.00
X0018:Amigo2	UTSW	15	97,143,774 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- AGATGCCTCTCAGCTGTCTC -3'
(R):5'- TCGTTTGTCAAGCTGAGCAC -3'

Sequencing Primer
(F):5'- CCCCGGCACTAAGTTTATATGGTG -3'
(R):5'- GTCAAGCTGAGCACCTTAATTC -3'

Posted On

2016-07-06