Mutagenetix > Incidental Mutation

Incidental Mutation 'R5207:Garin3'

402094

Institutional Source

Beutler Lab

Gene Symbol

Garin3

Ensembl Gene

ENSMUSG00000020401

Gene Name

golgi associated RAB2 interactor 3

Synonyms

Fam71b, OTTMUSG00000005491

MMRRC Submission

042782-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5207 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

46295555-46298812 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 46295990 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 121 (S121P)

Ref Sequence

ENSEMBL: ENSMUSP00000055079 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000063166]

AlphaFold

Q5STT6

Predicted Effect

probably benign
Transcript: ENSMUST00000063166
AA Change: S121P

PolyPhen 2 Score 0.132 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000055079
Gene: ENSMUSG00000020401
AA Change: S121P

Domain	Start	End	E-Value	Type
Pfam:DUF3699	120	192	1.2e-32	PFAM
low complexity region	241	361	N/A	INTRINSIC
low complexity region	497	523	N/A	INTRINSIC
low complexity region	551	575	N/A	INTRINSIC
SCOP:d1g7sa3	586	650	1e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139280

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.7%

Validation Efficiency

97% (60/62)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahctf1	A	T	1: 179,621,159 (GRCm39)		probably benign	Het
Alg6	C	T	4: 99,607,431 (GRCm39)	L15F	possibly damaging	Het
Allc	T	A	12: 28,605,325 (GRCm39)	M325L	probably benign	Het
Ap3b2	T	C	7: 81,126,517 (GRCm39)	N361S	possibly damaging	Het
Bmp8b	A	G	4: 123,009,714 (GRCm39)		probably benign	Het
Borcs6	A	T	11: 68,951,674 (GRCm39)	T351S	probably damaging	Het
Ccar1	T	C	10: 62,589,060 (GRCm39)	R808G	unknown	Het
Celsr3	A	T	9: 108,709,958 (GRCm39)	T1480S	probably benign	Het
Chdh	C	T	14: 29,753,318 (GRCm39)	P76S	probably damaging	Het
Chmp7	T	C	14: 69,969,755 (GRCm39)	S62G	probably benign	Het
Cldn23	A	T	8: 36,293,182 (GRCm39)	V102E	probably damaging	Het
Csn2	G	A	5: 87,842,821 (GRCm39)	Q69*	probably null	Het
Ctrc	A	C	4: 141,567,695 (GRCm39)	I136S	probably damaging	Het
Cysltr2	A	C	14: 73,266,951 (GRCm39)	L253R	probably damaging	Het
Ddr2	G	A	1: 169,812,530 (GRCm39)	T654M	probably damaging	Het
Derl2	G	T	11: 70,910,073 (GRCm39)		probably null	Het
Dnai7	A	T	6: 145,124,794 (GRCm39)	D510E	probably damaging	Het
Dock5	T	C	14: 68,013,733 (GRCm39)	S1330G	probably benign	Het
Emp3	T	C	7: 45,569,373 (GRCm39)	N56S	probably benign	Het
Fam161a	A	T	11: 22,970,583 (GRCm39)	K195*	probably null	Het
Ficd	T	A	5: 113,875,072 (GRCm39)	V47E	probably benign	Het
Gbp10	T	C	5: 105,372,575 (GRCm39)	T123A	probably benign	Het
Gdf7	C	T	12: 8,348,371 (GRCm39)	A309T	unknown	Het
Gm14486	G	T	2: 30,548,572 (GRCm39)		noncoding transcript	Het
Herc1	T	A	9: 66,307,151 (GRCm39)	C990*	probably null	Het
Itgb4	T	C	11: 115,897,365 (GRCm39)	V1530A	probably damaging	Het
Itpka	G	A	2: 119,580,974 (GRCm39)	R374H	probably damaging	Het
Lacc1	T	A	14: 77,271,594 (GRCm39)		probably null	Het
Med23	A	T	10: 24,771,734 (GRCm39)	K225*	probably null	Het
Mrgpra3	T	A	7: 47,239,909 (GRCm39)	T6S	probably benign	Het
Mroh7	T	A	4: 106,578,583 (GRCm39)	N32Y	probably damaging	Het
Mrps2	A	G	2: 28,359,763 (GRCm39)	R207G	probably damaging	Het
Mup20	A	C	4: 61,969,823 (GRCm39)		probably null	Het
Nagpa	A	G	16: 5,017,478 (GRCm39)		probably null	Het
Nek3	A	T	8: 22,622,243 (GRCm39)		probably benign	Het
Nes	G	A	3: 87,885,935 (GRCm39)	G1398E	probably damaging	Het
Nf1	G	T	11: 79,345,015 (GRCm39)	V1323L	probably damaging	Het
Or5b96	T	A	19: 12,867,801 (GRCm39)	I47F	probably benign	Het
Or6b2	A	T	1: 92,407,594 (GRCm39)	F250I	probably benign	Het
Or6c2	T	C	10: 129,362,773 (GRCm39)	F226L	probably benign	Het
Paqr8	G	T	1: 21,005,482 (GRCm39)	C212F	probably benign	Het
Pcdhb1	T	C	18: 37,399,515 (GRCm39)	Y489H	probably damaging	Het
Piwil2	T	C	14: 70,629,966 (GRCm39)	K683E	probably damaging	Het
Pjvk	A	C	2: 76,480,734 (GRCm39)		probably null	Het
Pkd1l3	A	T	8: 110,359,823 (GRCm39)	S893C	probably damaging	Het
Plxna2	A	G	1: 194,471,207 (GRCm39)	T993A	probably benign	Het
Ppp2r2b	A	T	18: 42,821,417 (GRCm39)	I247N	probably damaging	Het
Rac2	T	C	15: 78,449,654 (GRCm39)	N92S	probably damaging	Het
Senp2	A	T	16: 21,860,130 (GRCm39)	H501L	possibly damaging	Het
Snx29	A	T	16: 11,556,227 (GRCm39)	I753F	probably damaging	Het
Tcf20	T	A	15: 82,740,386 (GRCm39)	H355L	probably damaging	Het
Tex2	T	C	11: 106,437,666 (GRCm39)	D668G	unknown	Het
Tlr12	G	A	4: 128,510,502 (GRCm39)	Q583*	probably null	Het
Tmem119	T	C	5: 113,933,289 (GRCm39)	I171V	probably damaging	Het
Ube2m	C	T	7: 12,770,249 (GRCm39)		probably null	Het
Vmn2r25	A	T	6: 123,817,062 (GRCm39)	I173N	probably damaging	Het
Whrn	A	T	4: 63,350,951 (GRCm39)	V15E	probably damaging	Het
Zfp558	A	C	9: 18,368,296 (GRCm39)	V164G	possibly damaging	Het

Other mutations in Garin3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01647:Garin3	APN	11	46,296,224 (GRCm39)	nonsense	probably null
IGL02375:Garin3	APN	11	46,297,379 (GRCm39)	missense	probably damaging	0.99
IGL02571:Garin3	APN	11	46,296,072 (GRCm39)	missense	probably damaging	0.99
R0013:Garin3	UTSW	11	46,297,631 (GRCm39)	missense	unknown
R1902:Garin3	UTSW	11	46,297,838 (GRCm39)	missense	probably benign	0.44
R1985:Garin3	UTSW	11	46,298,693 (GRCm39)	makesense	probably null
R2079:Garin3	UTSW	11	46,295,934 (GRCm39)	missense	probably benign	0.14
R2151:Garin3	UTSW	11	46,296,158 (GRCm39)	nonsense	probably null
R2857:Garin3	UTSW	11	46,296,039 (GRCm39)	missense	probably damaging	1.00
R2859:Garin3	UTSW	11	46,296,039 (GRCm39)	missense	probably damaging	1.00
R3807:Garin3	UTSW	11	46,295,780 (GRCm39)	missense	possibly damaging	0.77
R4232:Garin3	UTSW	11	46,298,232 (GRCm39)	missense	possibly damaging	0.51
R4342:Garin3	UTSW	11	46,298,043 (GRCm39)	missense	possibly damaging	0.67
R4679:Garin3	UTSW	11	46,295,640 (GRCm39)	missense	possibly damaging	0.68
R5119:Garin3	UTSW	11	46,297,863 (GRCm39)	missense	probably damaging	1.00
R5540:Garin3	UTSW	11	46,295,715 (GRCm39)	missense	probably damaging	0.99
R6618:Garin3	UTSW	11	46,298,126 (GRCm39)	missense	probably damaging	1.00
R6862:Garin3	UTSW	11	46,298,418 (GRCm39)	missense	possibly damaging	0.78
R7036:Garin3	UTSW	11	46,298,235 (GRCm39)	missense
R7489:Garin3	UTSW	11	46,298,268 (GRCm39)	missense
R7809:Garin3	UTSW	11	46,298,631 (GRCm39)	missense
R7822:Garin3	UTSW	11	46,295,730 (GRCm39)	missense
R7996:Garin3	UTSW	11	46,295,889 (GRCm39)	missense
R8984:Garin3	UTSW	11	46,295,695 (GRCm39)	nonsense	probably null
R9324:Garin3	UTSW	11	46,295,810 (GRCm39)	missense
R9532:Garin3	UTSW	11	46,297,673 (GRCm39)	missense
Z1088:Garin3	UTSW	11	46,298,550 (GRCm39)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- TGTTTGAGAGCGACTTTATCCAG -3'
(R):5'- ATTGGTGGCCTCAGGAGATAG -3'

Sequencing Primer
(F):5'- GAGAGCGACTTTATCCAGATTAGC -3'
(R):5'- GCCTCAGGAGATAGACAAGCTTTTC -3'

Posted On

2016-07-22