Mutagenetix > Incidental Mutation

Incidental Mutation 'R0417:Zbed6'

40361

Institutional Source

Beutler Lab

Gene Symbol

Zbed6

Ensembl Gene

ENSMUSG00000102049

Gene Name

zinc finger, BED type containing 6

Synonyms

Gm38394, similar to Zinc finger BED domain containing protein 4, MGR, Gm8466

MMRRC Submission

038619-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.252) question?

Stock #

R0417 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

133547678-133589056 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 133586276 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 354 (S354T)

Ref Sequence

ENSEMBL: ENSMUSP00000140892 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027736] [ENSMUST00000179598] [ENSMUST00000186476] [ENSMUST00000190574] [ENSMUST00000191896] [ENSMUST00000194668] [ENSMUST00000195424] [ENSMUST00000195067] [ENSMUST00000193504]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000027736

SMART Domains

Protein: ENSMUSP00000027736
Gene: ENSMUSG00000116275

Domain	Start	End	E-Value	Type
ZnF_C3H1	3	28	4.26e-1	SMART
ZnF_C3H1	31	56	7.62e0	SMART
ZnF_C3H1	60	86	6.83e1	SMART
low complexity region	161	176	N/A	INTRINSIC
low complexity region	218	241	N/A	INTRINSIC
low complexity region	367	376	N/A	INTRINSIC
low complexity region	625	647	N/A	INTRINSIC
low complexity region	717	730	N/A	INTRINSIC
low complexity region	770	788	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000179598
AA Change: S354T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000136026
Gene: ENSMUSG00000094410
AA Change: S354T

Domain	Start	End	E-Value	Type
low complexity region	57	84	N/A	INTRINSIC
ZnF_BED	130	183	1.42e-8	SMART
low complexity region	203	215	N/A	INTRINSIC
ZnF_BED	265	318	5.37e-9	SMART
low complexity region	840	862	N/A	INTRINSIC
Pfam:Dimer_Tnp_hAT	869	950	9.3e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000186476
AA Change: S354T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000139417
Gene: ENSMUSG00000094410
AA Change: S354T

Domain	Start	End	E-Value	Type
low complexity region	57	84	N/A	INTRINSIC
ZnF_BED	130	183	1.42e-8	SMART
low complexity region	203	215	N/A	INTRINSIC
ZnF_BED	265	318	5.37e-9	SMART
low complexity region	840	862	N/A	INTRINSIC
Pfam:Dimer_Tnp_hAT	869	950	1.9e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000190574
AA Change: S354T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000140892
Gene: ENSMUSG00000102049
AA Change: S354T

Domain	Start	End	E-Value	Type
low complexity region	57	84	N/A	INTRINSIC
ZnF_BED	130	183	1.42e-8	SMART
low complexity region	203	215	N/A	INTRINSIC
ZnF_BED	265	318	5.37e-9	SMART
low complexity region	840	862	N/A	INTRINSIC
Pfam:Dimer_Tnp_hAT	869	950	1.9e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191705

Predicted Effect

probably benign
Transcript: ENSMUST00000191896

SMART Domains

Protein: ENSMUSP00000141255
Gene: ENSMUSG00000102976

Domain	Start	End	E-Value	Type
ZnF_C3H1	3	28	4.26e-1	SMART
ZnF_C3H1	31	56	7.62e0	SMART
ZnF_C3H1	60	86	6.83e1	SMART
low complexity region	161	176	N/A	INTRINSIC
low complexity region	218	241	N/A	INTRINSIC
low complexity region	367	376	N/A	INTRINSIC
low complexity region	625	647	N/A	INTRINSIC
low complexity region	717	730	N/A	INTRINSIC
low complexity region	770	788	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191932

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192148

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192775

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192107

Predicted Effect

probably benign
Transcript: ENSMUST00000194668

SMART Domains

Protein: ENSMUSP00000141727
Gene: ENSMUSG00000102976

Domain	Start	End	E-Value	Type
ZnF_C3H1	3	28	1.8e-3	SMART
ZnF_C3H1	31	56	3.2e-2	SMART
ZnF_C3H1	60	86	2.9e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195424

SMART Domains

Protein: ENSMUSP00000142066
Gene: ENSMUSG00000102976

Domain	Start	End	E-Value	Type
ZnF_C3H1	3	28	1.8e-3	SMART
ZnF_C3H1	31	56	3.2e-2	SMART
ZnF_C3H1	60	86	2.9e-1	SMART
low complexity region	161	176	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000195067

Predicted Effect

probably benign
Transcript: ENSMUST00000193504

SMART Domains

Protein: ENSMUSP00000141895
Gene: ENSMUSG00000102976

Domain	Start	End	E-Value	Type
ZnF_C3H1	3	28	1.8e-3	SMART
ZnF_C3H1	31	56	3.2e-2	SMART
Blast:ZnF_C3H1	60	84	2e-11	BLAST

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this transposon-derived intronless gene is a transcriptional repressor that binds to the consensus sequence 5'-GCTCGC-3'. The encoded protein has been shown to repress IGF2 transcription. This gene is located within the first intron of the ZC3H11A gene. [provided by RefSeq, Jul 2016]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030K09Rik	A	G	8: 73,199,244 (GRCm39)	K217R	probably damaging	Het
1810024B03Rik	A	G	2: 127,028,864 (GRCm39)	Y112H	probably damaging	Het
Acot2	T	C	12: 84,037,387 (GRCm39)	Y234H	probably benign	Het
Alox12e	C	T	11: 70,212,691 (GRCm39)	V53I	probably benign	Het
Ankrd50	T	C	3: 38,510,510 (GRCm39)	H619R	probably damaging	Het
Arfgef3	A	T	10: 18,479,259 (GRCm39)	L1452Q	probably damaging	Het
Arhgap42	T	C	9: 9,180,034 (GRCm39)	S82G	possibly damaging	Het
Arhgef18	T	C	8: 3,438,957 (GRCm39)		probably benign	Het
Bicra	C	A	7: 15,706,247 (GRCm39)	R1398L	probably damaging	Het
Boc	T	C	16: 44,340,597 (GRCm39)	T118A	probably benign	Het
Btnl9	A	G	11: 49,066,422 (GRCm39)	Y381H	probably damaging	Het
Cbln3	T	G	14: 56,121,586 (GRCm39)	E20A	probably benign	Het
Cdc42ep5	A	G	7: 4,154,482 (GRCm39)	L102P	probably damaging	Het
Csrnp3	A	G	2: 65,849,887 (GRCm39)	Y171C	probably benign	Het
Cyp2d9	A	T	15: 82,340,152 (GRCm39)	I181F	probably damaging	Het
Cyp7b1	T	A	3: 18,150,855 (GRCm39)	T295S	probably damaging	Het
Dbn1	C	T	13: 55,622,729 (GRCm39)	E585K	probably damaging	Het
Dok1	A	T	6: 83,008,550 (GRCm39)	D377E	probably damaging	Het
Eed	A	T	7: 89,620,760 (GRCm39)	Y87*	probably null	Het
Entpd3	T	C	9: 120,386,487 (GRCm39)	V156A	probably damaging	Het
Exo5	T	A	4: 120,779,269 (GRCm39)	T199S	probably damaging	Het
Extl2	T	C	3: 115,818,006 (GRCm39)	I106T	probably benign	Het
Ezh2	A	G	6: 47,528,660 (GRCm39)	C291R	probably benign	Het
Flvcr1	A	T	1: 190,743,416 (GRCm39)	M466K	probably benign	Het
Fras1	G	T	5: 96,839,231 (GRCm39)	M1583I	probably benign	Het
Fzd9	G	T	5: 135,278,473 (GRCm39)	R471S	probably damaging	Het
Galr1	A	T	18: 82,423,665 (GRCm39)	F204Y	probably damaging	Het
Gna11	A	T	10: 81,366,738 (GRCm39)	I324N	probably damaging	Het
Gucy1a2	A	G	9: 3,759,484 (GRCm39)	E430G	possibly damaging	Het
Hhatl	C	T	9: 121,617,828 (GRCm39)	A254T	probably benign	Het
Ikzf1	A	C	11: 11,719,352 (GRCm39)	N353T	probably benign	Het
Il7	T	A	3: 7,641,087 (GRCm39)	T110S	probably damaging	Het
Keg1	A	G	19: 12,688,424 (GRCm39)	N53D	probably damaging	Het
Klhl21	T	C	4: 152,099,964 (GRCm39)	I558T	probably damaging	Het
Lca5l	G	A	16: 95,963,853 (GRCm39)	T357M	probably damaging	Het
Lrba	T	C	3: 86,622,961 (GRCm39)	S2448P	probably damaging	Het
Map3k6	T	A	4: 132,975,393 (GRCm39)	Y709*	probably null	Het
Megf6	A	G	4: 154,352,424 (GRCm39)	E1261G	probably benign	Het
Mettl3	C	T	14: 52,534,155 (GRCm39)	G473D	probably damaging	Het
Mga	A	G	2: 119,733,271 (GRCm39)	I40V	probably damaging	Het
Mmp13	T	A	9: 7,276,602 (GRCm39)	D232E	probably benign	Het
Nampt	T	C	12: 32,883,100 (GRCm39)	V95A	probably benign	Het
Nbeal1	T	C	1: 60,286,893 (GRCm39)	V905A	probably benign	Het
Nomo1	A	T	7: 45,718,122 (GRCm39)	E840V	possibly damaging	Het
Nprl2	A	T	9: 107,420,497 (GRCm39)	I101F	probably damaging	Het
Nup160	A	T	2: 90,565,771 (GRCm39)	I1378F	possibly damaging	Het
Ogdhl	T	C	14: 32,048,936 (GRCm39)	S69P	probably damaging	Het
Or2y17	T	A	11: 49,231,500 (GRCm39)	I47N	possibly damaging	Het
Or4a68	C	A	2: 89,270,519 (GRCm39)	V35L	possibly damaging	Het
Or4k77	A	G	2: 111,199,450 (GRCm39)	S158G	possibly damaging	Het
Or5be3	A	T	2: 86,863,789 (GRCm39)	Y259N	probably damaging	Het
Or8b12i	G	A	9: 20,082,510 (GRCm39)	A119V	probably damaging	Het
Or8c16	A	G	9: 38,130,751 (GRCm39)	I211V	probably benign	Het
Or8c8	T	C	9: 38,165,160 (GRCm39)	F149S	probably benign	Het
Osbpl3	C	T	6: 50,324,998 (GRCm39)	V167I	probably benign	Het
Pclo	T	A	5: 14,763,036 (GRCm39)	H3836Q	unknown	Het
Prkcg	A	T	7: 3,352,820 (GRCm39)		probably null	Het
Ror1	A	T	4: 100,269,197 (GRCm39)	H345L	possibly damaging	Het
Slc36a2	C	T	11: 55,072,370 (GRCm39)		probably null	Het
Slc40a1	G	A	1: 45,950,534 (GRCm39)	P306L	possibly damaging	Het
Slc9a8	C	A	2: 167,299,264 (GRCm39)	T239K	probably benign	Het
Snapc3	A	G	4: 83,368,399 (GRCm39)	I299V	probably benign	Het
Sp3	G	A	2: 72,801,845 (GRCm39)	A56V	possibly damaging	Het
Spag17	T	A	3: 99,972,870 (GRCm39)	S1361T	probably benign	Het
Sptbn2	A	G	19: 4,787,954 (GRCm39)	T978A	probably benign	Het
Stom	C	A	2: 35,211,644 (GRCm39)	V126F	probably damaging	Het
Stpg2	A	G	3: 138,924,082 (GRCm39)	T162A	probably damaging	Het
Stxbp6	G	A	12: 44,949,740 (GRCm39)	T63M	probably damaging	Het
Tatdn1	A	C	15: 58,793,199 (GRCm39)	I69S	probably benign	Het
Tbata	A	T	10: 61,016,118 (GRCm39)	D198V	probably damaging	Het
Tbc1d5	T	C	17: 51,063,733 (GRCm39)	I638V	probably benign	Het
Tomm70a	A	G	16: 56,970,266 (GRCm39)	D548G	probably benign	Het
Ust	A	G	10: 8,121,700 (GRCm39)	F303L	probably damaging	Het
Vps13d	A	G	4: 144,703,130 (GRCm39)	S4306P	probably benign	Het
Zfp691	A	G	4: 119,027,693 (GRCm39)	S180P	possibly damaging	Het

Other mutations in Zbed6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00157:Zbed6	APN	1	133,585,114 (GRCm39)	missense	probably damaging	1.00
IGL01720:Zbed6	APN	1	133,585,264 (GRCm39)	missense	possibly damaging	0.82
IGL02320:Zbed6	APN	1	133,585,411 (GRCm39)	missense	probably damaging	0.97
R0385:Zbed6	UTSW	1	133,584,522 (GRCm39)	missense	probably damaging	0.99
R0526:Zbed6	UTSW	1	133,586,472 (GRCm39)	missense	probably damaging	0.99
R0576:Zbed6	UTSW	1	133,585,576 (GRCm39)	missense	probably benign	0.37
R1164:Zbed6	UTSW	1	133,586,941 (GRCm39)	missense	probably damaging	1.00
R1187:Zbed6	UTSW	1	133,586,941 (GRCm39)	missense	probably damaging	1.00
R1415:Zbed6	UTSW	1	133,585,556 (GRCm39)	missense	possibly damaging	0.80
R1997:Zbed6	UTSW	1	133,584,451 (GRCm39)	missense	probably damaging	1.00
R2186:Zbed6	UTSW	1	133,585,817 (GRCm39)	missense	probably damaging	1.00
R2875:Zbed6	UTSW	1	133,584,598 (GRCm39)	missense	probably damaging	1.00
R2876:Zbed6	UTSW	1	133,584,598 (GRCm39)	missense	probably damaging	1.00
R2975:Zbed6	UTSW	1	133,585,975 (GRCm39)	missense	probably damaging	0.99
R4573:Zbed6	UTSW	1	133,587,127 (GRCm39)	missense	probably benign	0.00
R4631:Zbed6	UTSW	1	133,586,482 (GRCm39)	missense	probably damaging	1.00
R4671:Zbed6	UTSW	1	133,584,778 (GRCm39)	missense	probably benign
R4976:Zbed6	UTSW	1	133,585,832 (GRCm39)	missense	probably benign	0.27
R5048:Zbed6	UTSW	1	133,586,462 (GRCm39)	missense	probably damaging	0.99
R5318:Zbed6	UTSW	1	133,585,853 (GRCm39)	missense	possibly damaging	0.86
R5400:Zbed6	UTSW	1	133,585,879 (GRCm39)	missense	probably damaging	1.00
R5427:Zbed6	UTSW	1	133,585,333 (GRCm39)	missense	possibly damaging	0.83
R6530:Zbed6	UTSW	1	133,586,939 (GRCm39)	missense	probably damaging	1.00
R7511:Zbed6	UTSW	1	133,586,981 (GRCm39)	missense	probably benign	0.30
R8215:Zbed6	UTSW	1	133,586,530 (GRCm39)	missense	probably damaging	1.00
R8529:Zbed6	UTSW	1	133,584,706 (GRCm39)	missense	probably benign	0.00
R8685:Zbed6	UTSW	1	133,584,754 (GRCm39)	nonsense	probably null
R9414:Zbed6	UTSW	1	133,585,015 (GRCm39)	missense	probably damaging	1.00
R9429:Zbed6	UTSW	1	133,585,453 (GRCm39)	missense	probably damaging	0.99
Z1177:Zbed6	UTSW	1	133,586,854 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTGCATTTTCACAATGTGTCGTCG -3'
(R):5'- CATCTTCAGGCAAGGCATTCTCCTC -3'

Sequencing Primer
(F):5'- CACAATGTGTCGTCGTTTCTC -3'
(R):5'- ATAAGTCAGCATCTGATGCCCTG -3'

Posted On

2013-05-23