Mutagenetix > Incidental Mutation

Incidental Mutation 'R5218:Scara5'

403618

Institutional Source

Beutler Lab

Gene Symbol

Scara5

Ensembl Gene

ENSMUSG00000022032

Gene Name

scavenger receptor class A, member 5

Synonyms

4933425F03Rik, 4932433F15Rik

MMRRC Submission

042791-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.092) question?

Stock #

R5218 (G1)

Quality Score

217

Status

Validated

Chromosome

Chromosomal Location

65903852-66002275 bp(+) (GRCm39)

Type of Mutation

frame shift

DNA Base Change (assembly)

CG to C at 65997111 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000022610 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022610]

AlphaFold

Q8K299

Predicted Effect

probably null
Transcript: ENSMUST00000022610

SMART Domains

Protein: ENSMUSP00000022610
Gene: ENSMUSG00000022032

Domain	Start	End	E-Value	Type
transmembrane domain	60	82	N/A	INTRINSIC
Pfam:Collagen	304	357	1.8e-8	PFAM
Pfam:Collagen	327	383	1.1e-8	PFAM
SR	389	489	5.5e-56	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

100% (60/60)

MGI Phenotype

PHENOTYPE: Homozygous deletion of this gene results in decreased male fertility and lymphocytic infiltration of the stroma of various tissues, particularly in the lungs. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921524L21Rik	T	A	18: 6,629,628 (GRCm39)	N230K	possibly damaging	Het
4933428M09Rik	G	T	X: 138,080,282 (GRCm39)	G16*	probably null	Het
Albfm1	A	G	5: 90,729,777 (GRCm39)	K400R	probably benign	Het
Amigo1	A	G	3: 108,095,086 (GRCm39)		probably null	Het
Arhgap30	A	T	1: 171,236,328 (GRCm39)	T901S	probably benign	Het
Arpp21	T	C	9: 111,972,499 (GRCm39)	D264G	probably damaging	Het
Ccbe1	C	T	18: 66,216,229 (GRCm39)	G165S	probably damaging	Het
Celsr1	T	C	15: 85,816,585 (GRCm39)	D1786G	probably damaging	Het
Cntn1	T	C	15: 92,237,430 (GRCm39)	L1008P	unknown	Het
Dclk2	T	A	3: 86,712,985 (GRCm39)	D489V	probably damaging	Het
Dip2b	T	A	15: 100,052,177 (GRCm39)	D259E	probably benign	Het
Disp3	T	C	4: 148,327,333 (GRCm39)	S1184G	possibly damaging	Het
Dync1li2	C	T	8: 105,169,179 (GRCm39)	W36*	probably null	Het
Ece2	A	T	16: 20,437,290 (GRCm39)	M211L	probably benign	Het
Edn3	C	T	2: 174,603,345 (GRCm39)	A31V	probably benign	Het
Enpp2	T	C	15: 54,750,982 (GRCm39)	Q266R	possibly damaging	Het
Fabp1	C	A	6: 71,176,944 (GRCm39)	Q12K	probably damaging	Het
Flt1	G	A	5: 147,618,738 (GRCm39)	T199M	probably damaging	Het
Galns	T	A	8: 123,325,328 (GRCm39)	I275F	probably damaging	Het
Gapvd1	T	C	2: 34,618,488 (GRCm39)	D295G	probably benign	Het
Gatb	A	G	3: 85,511,751 (GRCm39)	I169V	probably benign	Het
Gpd1	T	A	15: 99,618,011 (GRCm39)	I109N	probably damaging	Het
Gps2	T	C	11: 69,807,121 (GRCm39)		probably null	Het
Hsd17b12	T	C	2: 93,913,608 (GRCm39)	N99D	probably benign	Het
Itga3	A	T	11: 94,953,574 (GRCm39)	V256E	probably benign	Het
Kcnma1	T	A	14: 23,513,253 (GRCm39)	Y527F	probably damaging	Het
Lamc1	C	A	1: 153,103,442 (GRCm39)	V1375L	probably damaging	Het
Lrp1	C	A	10: 127,384,488 (GRCm39)	E3580D	probably damaging	Het
Ltbp4	AATTCAGGCCAAGGCTGGGATTCAGGCCGAGGCCGGGATTCAGGCCTAGGCTGGGATTCAGGC	AATTCAGGCCTAGGCTGGGATTCAGGC	7: 27,026,736 (GRCm39)		probably benign	Het
Medag	A	T	5: 149,345,719 (GRCm39)		probably benign	Het
Ncdn	C	A	4: 126,644,603 (GRCm39)	R73L	probably benign	Het
Nr4a1	T	C	15: 101,170,034 (GRCm39)	V339A	probably benign	Het
Ocln	G	T	13: 100,642,822 (GRCm39)	P420Q	probably damaging	Het
Or5ac24	A	T	16: 59,165,270 (GRCm39)	S265T	probably benign	Het
Pank4	C	T	4: 155,064,185 (GRCm39)	T681I	probably benign	Het
Pcdhb6	T	A	18: 37,467,388 (GRCm39)	V103E	possibly damaging	Het
Pcsk6	T	C	7: 65,675,036 (GRCm39)	F469S	probably benign	Het
Phrf1	A	G	7: 140,841,214 (GRCm39)	N1353S	possibly damaging	Het
Pou6f2	A	G	13: 18,326,586 (GRCm39)	I72T	probably damaging	Het
Ppig	T	C	2: 69,563,127 (GRCm39)		probably benign	Het
Ptprh	T	C	7: 4,600,919 (GRCm39)	S153G	probably benign	Het
Rab11b	T	C	17: 33,967,924 (GRCm39)	N91S	probably benign	Het
Slc2a9	A	G	5: 38,610,524 (GRCm39)	S92P	probably damaging	Het
Slit3	G	A	11: 35,575,002 (GRCm39)		probably null	Het
Sox5	T	C	6: 143,906,616 (GRCm39)	I280V	possibly damaging	Het
Stam2	G	A	2: 52,626,305 (GRCm39)		probably benign	Het
Tdrd9	C	T	12: 112,029,909 (GRCm39)		probably benign	Het
Tmem273	T	A	14: 32,538,793 (GRCm39)		probably null	Het
Tmem74	A	T	15: 43,730,640 (GRCm39)	N134K	possibly damaging	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Txnl1	T	G	18: 63,812,538 (GRCm39)	K85N	probably benign	Het
Vmn2r77	T	A	7: 86,451,341 (GRCm39)	M409K	probably damaging	Het
Wipf1	T	C	2: 73,274,812 (GRCm39)	D53G	probably damaging	Het
Wnt10a	G	A	1: 74,832,754 (GRCm39)	V116I	probably benign	Het
Xpot	T	A	10: 121,455,043 (GRCm39)	D33V	probably damaging	Het
Znrf3	C	T	11: 5,231,519 (GRCm39)	V665M	possibly damaging	Het

Other mutations in Scara5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Scara5	APN	14	65,975,864 (GRCm39)	splice site	probably benign
IGL00772:Scara5	APN	14	65,908,011 (GRCm39)	utr 5 prime	probably benign
IGL01768:Scara5	APN	14	65,927,224 (GRCm39)	nonsense	probably null
IGL02081:Scara5	APN	14	65,968,104 (GRCm39)	missense	possibly damaging	0.96
IGL02280:Scara5	APN	14	65,968,227 (GRCm39)	missense	probably benign
IGL02795:Scara5	APN	14	65,968,129 (GRCm39)	missense	possibly damaging	0.72
IGL02887:Scara5	APN	14	66,000,278 (GRCm39)	missense	unknown
R0040:Scara5	UTSW	14	66,000,166 (GRCm39)	splice site	probably benign
R0605:Scara5	UTSW	14	65,997,097 (GRCm39)	missense	possibly damaging	0.85
R0735:Scara5	UTSW	14	65,968,468 (GRCm39)	missense	possibly damaging	0.85
R0925:Scara5	UTSW	14	66,000,167 (GRCm39)	critical splice acceptor site	probably benign
R1575:Scara5	UTSW	14	65,968,314 (GRCm39)	missense	probably benign	0.18
R1746:Scara5	UTSW	14	65,968,539 (GRCm39)	missense	probably benign
R1968:Scara5	UTSW	14	65,927,249 (GRCm39)	missense	possibly damaging	0.73
R4455:Scara5	UTSW	14	66,000,196 (GRCm39)	missense	probably benign	0.01
R4547:Scara5	UTSW	14	65,908,023 (GRCm39)	missense	possibly damaging	0.72
R4779:Scara5	UTSW	14	65,968,198 (GRCm39)	missense	probably benign	0.03
R5316:Scara5	UTSW	14	65,927,264 (GRCm39)	missense	possibly damaging	0.73
R5331:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5332:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5366:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5367:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5368:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5369:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5417:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5418:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5420:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5447:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5473:Scara5	UTSW	14	65,977,788 (GRCm39)	missense	possibly damaging	0.84
R5580:Scara5	UTSW	14	65,968,528 (GRCm39)	missense	probably benign	0.02
R7734:Scara5	UTSW	14	65,968,600 (GRCm39)	missense	possibly damaging	0.85
R7995:Scara5	UTSW	14	65,997,057 (GRCm39)	missense	possibly damaging	0.53
R8090:Scara5	UTSW	14	65,979,586 (GRCm39)	nonsense	probably null
R8308:Scara5	UTSW	14	65,927,234 (GRCm39)	missense	probably damaging	0.97
R9036:Scara5	UTSW	14	66,000,197 (GRCm39)	missense	probably benign	0.24

Predicted Primers

PCR Primer
(F):5'- GACACAAGGTAGCCTCATGG -3'
(R):5'- TCACATGAAGGTGACGCAG -3'

Sequencing Primer
(F):5'- CACAAGGTAGCCTCATGGTTTTAGC -3'
(R):5'- CACATGAAGGTGACGCAGACTTTG -3'

Posted On

2016-07-22