Incidental Mutation 'R5276:Sidt2'
ID 403953
Institutional Source Beutler Lab
Gene Symbol Sidt2
Ensembl Gene ENSMUSG00000034908
Gene Name SID1 transmembrane family, member 2
Synonyms CGI-40
MMRRC Submission 042863-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.176) question?
Stock # R5276 (G1)
Quality Score 194
Status Not validated
Chromosome 9
Chromosomal Location 45849155-45866556 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 45866075 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Tyrosine at position 44 (N44Y)
Ref Sequence ENSEMBL: ENSMUSP00000110220 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038488] [ENSMUST00000114573] [ENSMUST00000162072] [ENSMUST00000162379] [ENSMUST00000162529]
AlphaFold Q8CIF6
Predicted Effect probably damaging
Transcript: ENSMUST00000038488
AA Change: N44Y

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000044290
Gene: ENSMUSG00000034908
AA Change: N44Y

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:SID-1_RNA_chan 169 832 8.5e-214 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000114573
AA Change: N44Y

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000110220
Gene: ENSMUSG00000034908
AA Change: N44Y

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:SID-1_RNA_chan 169 853 9e-290 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160911
Predicted Effect probably benign
Transcript: ENSMUST00000161606
SMART Domains Protein: ENSMUSP00000125660
Gene: ENSMUSG00000034908

DomainStartEndE-ValueType
Pfam:SID-1_RNA_chan 1 221 4.7e-29 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000162072
AA Change: N44Y

PolyPhen 2 Score 0.938 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000124750
Gene: ENSMUSG00000034908
AA Change: N44Y

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:SID-1_RNA_chan 169 338 2.3e-34 PFAM
low complexity region 452 463 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162379
SMART Domains Protein: ENSMUSP00000124503
Gene: ENSMUSG00000034908

DomainStartEndE-ValueType
Pfam:SID-1_RNA_chan 1 135 3.3e-29 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000216147
Predicted Effect probably benign
Transcript: ENSMUST00000162529
SMART Domains Protein: ENSMUSP00000125060
Gene: ENSMUSG00000034908

DomainStartEndE-ValueType
Pfam:SID-1_RNA_chan 1 135 9.2e-20 PFAM
low complexity region 202 213 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.3%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a targeted allele exhibit male-specific decreased body weight and size, impaired glucose tolerance, increased serum glucose, decreased serum insulin and decreased insule granule release from beta cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam26a A G 8: 44,023,457 (GRCm39) F11S probably benign Het
Adipor2 T A 6: 119,334,182 (GRCm39) I343F probably damaging Het
Ahdc1 C T 4: 132,790,109 (GRCm39) P450L possibly damaging Het
Akna A C 4: 63,286,440 (GRCm39) V1353G possibly damaging Het
Baz2b G A 2: 59,792,958 (GRCm39) T390I probably benign Het
Btbd7 T C 12: 102,804,651 (GRCm39) K130E probably benign Het
Cdc42bpa A G 1: 179,965,415 (GRCm39) Y1101C probably damaging Het
Crlf2 T G 5: 109,705,501 (GRCm39) probably benign Het
Ddx59 A T 1: 136,347,186 (GRCm39) R281S probably damaging Het
Dgcr8 T G 16: 18,101,635 (GRCm39) T216P probably benign Het
Dsg4 A T 18: 20,579,896 (GRCm39) I34F probably benign Het
Enpp3 A G 10: 24,685,814 (GRCm39) S194P probably damaging Het
Entpd8 C T 2: 24,975,057 (GRCm39) R463W probably benign Het
Fam169a A G 13: 97,255,004 (GRCm39) T407A probably benign Het
Fam98b G T 2: 117,089,779 (GRCm39) V99F possibly damaging Het
Foxn3 T A 12: 99,162,687 (GRCm39) K405* probably null Het
Gsdmc T C 15: 63,673,806 (GRCm39) T160A probably benign Het
Hdac1 T C 4: 129,422,716 (GRCm39) probably null Het
Igfbp1 A C 11: 7,151,892 (GRCm39) T232P probably damaging Het
Lcor T A 19: 41,573,478 (GRCm39) H744Q probably damaging Het
Mertk G C 2: 128,643,234 (GRCm39) G878R possibly damaging Het
Metap2 G T 10: 93,704,784 (GRCm39) P281H possibly damaging Het
Metap2 T A 10: 93,704,794 (GRCm39) T278S probably benign Het
Mfn1 T C 3: 32,618,354 (GRCm39) V169A probably benign Het
Mms22l A G 4: 24,578,774 (GRCm39) D751G probably damaging Het
Mpl A G 4: 118,312,918 (GRCm39) V138A probably benign Het
Myef2 T A 2: 124,937,641 (GRCm39) K533N probably damaging Het
Mylk3 C T 8: 86,082,071 (GRCm39) G309E probably damaging Het
Nid1 T C 13: 13,643,157 (GRCm39) V365A probably damaging Het
Or4d2 A T 11: 87,784,018 (GRCm39) I244N probably damaging Het
Or5p57 A T 7: 107,665,423 (GRCm39) L164* probably null Het
Or7d10 C A 9: 19,831,917 (GRCm39) N137K possibly damaging Het
Or8g19 T C 9: 39,055,611 (GRCm39) C72R probably damaging Het
Pbrm1 A G 14: 30,828,141 (GRCm39) K1323E probably damaging Het
Pcdhga12 G A 18: 37,899,728 (GRCm39) D187N possibly damaging Het
Phrf1 T C 7: 140,839,196 (GRCm39) probably benign Het
Phtf2 A G 5: 20,977,195 (GRCm39) V608A probably benign Het
Plec G A 15: 76,057,638 (GRCm39) R4122W probably damaging Het
Polm A G 11: 5,779,393 (GRCm39) S441P probably benign Het
Prrc2b T A 2: 32,104,734 (GRCm39) V1404E probably benign Het
Ptger1 T G 8: 84,395,974 (GRCm39) S344A possibly damaging Het
Rasef A T 4: 73,654,004 (GRCm39) D401E probably null Het
Rbfox3 T C 11: 118,387,178 (GRCm39) Y312C probably damaging Het
Rbm48 A G 5: 3,634,759 (GRCm39) C402R probably benign Het
Rhbdl3 G A 11: 80,210,492 (GRCm39) A82T probably benign Het
Rnf123 AT ATT 9: 107,941,202 (GRCm39) probably null Het
Sfi1 A ATCTTCCCAAAGCCAGTGC 11: 3,103,384 (GRCm39) probably benign Homo
Slf2 T A 19: 44,923,600 (GRCm39) L138Q possibly damaging Het
Spag16 T C 1: 69,935,742 (GRCm39) probably null Het
Sspo C T 6: 48,467,401 (GRCm39) P4188S probably damaging Het
Synm C T 7: 67,384,437 (GRCm39) S1075N probably benign Het
Tacc2 G T 7: 130,331,047 (GRCm39) D2151Y probably damaging Het
Tbc1d32 C A 10: 56,027,914 (GRCm39) L729F probably damaging Het
Tnfsf4 A G 1: 161,244,584 (GRCm39) N91S possibly damaging Het
Trim63 G A 4: 134,050,444 (GRCm39) E243K probably benign Het
Trim72 T G 7: 127,603,714 (GRCm39) L20R probably damaging Het
Tubb1 A G 2: 174,299,217 (GRCm39) M300V probably damaging Het
Ubfd1 C T 7: 121,668,091 (GRCm39) A207V probably damaging Het
Usp16 T A 16: 87,267,339 (GRCm39) probably null Het
Vmn2r23 A G 6: 123,689,936 (GRCm39) T271A possibly damaging Het
Vmn2r72 T A 7: 85,387,462 (GRCm39) I701F possibly damaging Het
Wdfy4 A G 14: 32,769,232 (GRCm39) Y2078H probably damaging Het
Wdr41 T C 13: 95,153,958 (GRCm39) probably null Het
Zfp955b A G 17: 33,522,031 (GRCm39) Y500C probably damaging Het
Other mutations in Sidt2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00325:Sidt2 APN 9 45,853,534 (GRCm39) missense possibly damaging 0.84
IGL00586:Sidt2 APN 9 45,854,350 (GRCm39) missense possibly damaging 0.78
IGL00786:Sidt2 APN 9 45,861,101 (GRCm39) missense possibly damaging 0.69
IGL01069:Sidt2 APN 9 45,854,375 (GRCm39) missense possibly damaging 0.73
IGL01160:Sidt2 APN 9 45,854,024 (GRCm39) missense probably damaging 1.00
IGL01474:Sidt2 APN 9 45,858,280 (GRCm39) critical splice donor site probably null
IGL02068:Sidt2 APN 9 45,856,962 (GRCm39) critical splice donor site probably null
IGL02171:Sidt2 APN 9 45,864,068 (GRCm39) missense possibly damaging 0.81
IGL02312:Sidt2 APN 9 45,858,299 (GRCm39) missense probably benign 0.27
IGL02344:Sidt2 APN 9 45,856,590 (GRCm39) missense probably null 1.00
IGL03030:Sidt2 APN 9 45,850,803 (GRCm39) missense probably damaging 1.00
IGL03062:Sidt2 APN 9 45,853,981 (GRCm39) critical splice donor site probably null
R0157:Sidt2 UTSW 9 45,850,565 (GRCm39) missense probably damaging 1.00
R0330:Sidt2 UTSW 9 45,866,200 (GRCm39) missense probably benign 0.09
R0549:Sidt2 UTSW 9 45,864,417 (GRCm39) splice site probably null
R0714:Sidt2 UTSW 9 45,858,358 (GRCm39) splice site probably benign
R1241:Sidt2 UTSW 9 45,857,002 (GRCm39) missense probably damaging 0.97
R1511:Sidt2 UTSW 9 45,861,387 (GRCm39) missense probably damaging 1.00
R1558:Sidt2 UTSW 9 45,863,098 (GRCm39) missense probably damaging 1.00
R1677:Sidt2 UTSW 9 45,864,517 (GRCm39) missense probably benign 0.01
R2152:Sidt2 UTSW 9 45,856,638 (GRCm39) missense probably damaging 1.00
R2153:Sidt2 UTSW 9 45,856,638 (GRCm39) missense probably damaging 1.00
R2154:Sidt2 UTSW 9 45,856,638 (GRCm39) missense probably damaging 1.00
R4210:Sidt2 UTSW 9 45,854,073 (GRCm39) missense probably benign 0.00
R4349:Sidt2 UTSW 9 45,857,011 (GRCm39) missense possibly damaging 0.94
R4855:Sidt2 UTSW 9 45,863,327 (GRCm39) missense probably benign
R5069:Sidt2 UTSW 9 45,850,759 (GRCm39) splice site probably null
R5175:Sidt2 UTSW 9 45,863,086 (GRCm39) missense probably damaging 1.00
R5544:Sidt2 UTSW 9 45,855,753 (GRCm39) missense probably damaging 1.00
R5805:Sidt2 UTSW 9 45,853,497 (GRCm39) missense probably damaging 0.97
R5927:Sidt2 UTSW 9 45,855,752 (GRCm39) missense probably damaging 1.00
R6954:Sidt2 UTSW 9 45,864,148 (GRCm39) missense probably benign 0.01
R7060:Sidt2 UTSW 9 45,864,544 (GRCm39) missense possibly damaging 0.91
R7117:Sidt2 UTSW 9 45,864,517 (GRCm39) missense probably benign 0.01
R7207:Sidt2 UTSW 9 45,856,449 (GRCm39) missense probably damaging 1.00
R7317:Sidt2 UTSW 9 45,854,988 (GRCm39) nonsense probably null
R7765:Sidt2 UTSW 9 45,852,873 (GRCm39) splice site probably null
R8098:Sidt2 UTSW 9 45,857,028 (GRCm39) missense probably benign 0.05
R9039:Sidt2 UTSW 9 45,856,648 (GRCm39) missense probably benign 0.05
R9157:Sidt2 UTSW 9 45,852,658 (GRCm39) missense possibly damaging 0.58
R9160:Sidt2 UTSW 9 45,858,280 (GRCm39) critical splice donor site probably null
R9261:Sidt2 UTSW 9 45,861,396 (GRCm39) missense probably damaging 0.99
R9313:Sidt2 UTSW 9 45,852,658 (GRCm39) missense possibly damaging 0.58
R9641:Sidt2 UTSW 9 45,864,495 (GRCm39) missense probably benign 0.00
R9792:Sidt2 UTSW 9 45,850,563 (GRCm39) missense probably damaging 0.97
R9793:Sidt2 UTSW 9 45,850,563 (GRCm39) missense probably damaging 0.97
R9803:Sidt2 UTSW 9 45,854,912 (GRCm39) missense probably damaging 1.00
X0026:Sidt2 UTSW 9 45,850,597 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGGTGGAAACCAGGTCTTG -3'
(R):5'- ATCTGAGGCCGGGGTTAAAG -3'

Sequencing Primer
(F):5'- CAGGTCTTGGCAGGGGGAG -3'
(R):5'- AGATGCTGGAAGCTGCTGC -3'
Posted On 2016-07-22