Mutagenetix > Incidental Mutation

Incidental Mutation 'R5279:Zxdc'

404102

Institutional Source

Beutler Lab

Gene Symbol

Zxdc

Ensembl Gene

ENSMUSG00000034430

Gene Name

ZXD family zinc finger C

Synonyms

B930086F11Rik

MMRRC Submission

042839-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.128) question?

Stock #

R5279 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

90346474-90380472 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 90347419 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 260 (M260T)

Ref Sequence

ENSEMBL: ENSMUSP00000109167 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045740] [ENSMUST00000075117] [ENSMUST00000113539]

AlphaFold

Q8C8V1

Predicted Effect

possibly damaging
Transcript: ENSMUST00000045740
AA Change: M260T

PolyPhen 2 Score 0.863 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000036329
Gene: ENSMUSG00000034430
AA Change: M260T

Domain	Start	End	E-Value	Type
low complexity region	22	73	N/A	INTRINSIC
low complexity region	105	115	N/A	INTRINSIC
low complexity region	134	152	N/A	INTRINSIC
ZnF_C2H2	176	200	4.79e-3	SMART
ZnF_C2H2	209	233	4.3e-5	SMART
ZnF_C2H2	239	263	4.3e-5	SMART
ZnF_C2H2	269	291	1.69e-3	SMART
ZnF_C2H2	298	322	1.82e-3	SMART
ZnF_C2H2	329	353	1.26e-2	SMART
ZnF_C2H2	359	383	1.36e-2	SMART
ZnF_C2H2	389	413	5.21e-4	SMART
ZnF_C2H2	419	443	4.72e-2	SMART
ZnF_C2H2	452	477	3.07e-1	SMART
low complexity region	487	502	N/A	INTRINSIC
low complexity region	635	651	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000075117
AA Change: M260T

PolyPhen 2 Score 0.863 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000074619
Gene: ENSMUSG00000034430
AA Change: M260T

Domain	Start	End	E-Value	Type
low complexity region	22	73	N/A	INTRINSIC
low complexity region	105	115	N/A	INTRINSIC
low complexity region	134	152	N/A	INTRINSIC
ZnF_C2H2	176	200	4.79e-3	SMART
ZnF_C2H2	209	233	4.3e-5	SMART
ZnF_C2H2	239	263	4.3e-5	SMART
ZnF_C2H2	269	291	1.69e-3	SMART
ZnF_C2H2	298	322	1.82e-3	SMART
ZnF_C2H2	329	353	1.26e-2	SMART
ZnF_C2H2	359	383	1.36e-2	SMART
ZnF_C2H2	389	413	5.21e-4	SMART
ZnF_C2H2	419	443	4.72e-2	SMART
ZnF_C2H2	452	477	3.07e-1	SMART
low complexity region	487	502	N/A	INTRINSIC
low complexity region	635	651	N/A	INTRINSIC
low complexity region	799	811	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000113539
AA Change: M260T

PolyPhen 2 Score 0.863 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000109167
Gene: ENSMUSG00000034430
AA Change: M260T

Domain	Start	End	E-Value	Type
low complexity region	44	95	N/A	INTRINSIC
low complexity region	127	137	N/A	INTRINSIC
low complexity region	156	174	N/A	INTRINSIC
ZnF_C2H2	198	222	4.79e-3	SMART
ZnF_C2H2	231	255	4.3e-5	SMART
ZnF_C2H2	261	285	4.3e-5	SMART
ZnF_C2H2	291	313	1.69e-3	SMART
ZnF_C2H2	320	344	1.82e-3	SMART
ZnF_C2H2	351	375	1.26e-2	SMART
ZnF_C2H2	381	405	1.36e-2	SMART
ZnF_C2H2	411	435	5.21e-4	SMART
ZnF_C2H2	441	465	4.72e-2	SMART
ZnF_C2H2	474	499	3.07e-1	SMART
low complexity region	509	524	N/A	INTRINSIC
low complexity region	657	673	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137483

Predicted Effect

probably benign
Transcript: ENSMUST00000203493

Meta Mutation Damage Score

0.0794

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.4%

Validation Efficiency

99% (73/74)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca17	C	A	17: 24,508,388 (GRCm39)	G1049V	probably damaging	Het
Afdn	G	A	17: 14,109,214 (GRCm39)	R1579H	probably damaging	Het
Ankrd28	T	A	14: 31,456,963 (GRCm39)	N386Y	probably damaging	Het
Atf7ip	T	A	6: 136,580,377 (GRCm39)	Y1100*	probably null	Het
Atp9b	T	A	18: 80,956,073 (GRCm39)	E3V	probably damaging	Het
AW554918	T	G	18: 25,308,488 (GRCm39)	D60E	possibly damaging	Het
Baz2b	G	T	2: 59,762,496 (GRCm39)	Q927K	probably damaging	Het
Birc6	A	G	17: 74,957,042 (GRCm39)	R3659G	probably damaging	Het
C8a	T	G	4: 104,703,185 (GRCm39)	N291H	probably damaging	Het
Calcoco1	G	A	15: 102,619,420 (GRCm39)	L390F	probably damaging	Het
Carmil3	A	G	14: 55,739,028 (GRCm39)	D894G	probably damaging	Het
Cdc20	A	G	4: 118,290,711 (GRCm39)	Y430H	probably damaging	Het
Cdc6	A	T	11: 98,803,088 (GRCm39)	I316F	probably damaging	Het
Ceacam23	T	A	7: 17,607,214 (GRCm39)		noncoding transcript	Het
Cenpu	T	A	8: 47,031,945 (GRCm39)		probably null	Het
Csmd2	T	A	4: 128,350,707 (GRCm39)	V1592D	probably benign	Het
Csmd3	G	T	15: 48,655,340 (GRCm39)		probably null	Het
Dnah7c	T	C	1: 46,558,429 (GRCm39)	F512L	probably benign	Het
Fam136a	T	A	6: 86,343,686 (GRCm39)	L61Q	probably damaging	Het
Fpgs	A	C	2: 32,582,779 (GRCm39)		probably benign	Het
Fzd4	G	A	7: 89,056,881 (GRCm39)	M309I	probably benign	Het
Gad2	A	G	2: 22,563,969 (GRCm39)	T391A	probably benign	Het
Gm11563	A	T	11: 99,549,539 (GRCm39)	S72T	unknown	Het
Gon4l	A	G	3: 88,794,944 (GRCm39)	I716V	probably benign	Het
Itga9	T	C	9: 118,457,273 (GRCm39)	V128A	probably damaging	Het
Kat6a	CGCAGCAGCAGCAGCAGCA	CGCAGCAGCAGCA	8: 23,429,664 (GRCm39)		probably benign	Het
Lrrc9	T	A	12: 72,542,368 (GRCm39)	D1063E	possibly damaging	Het
Lyst	T	A	13: 13,823,387 (GRCm39)	L1453*	probably null	Het
Mcm3ap	T	C	10: 76,343,373 (GRCm39)	V1755A	probably damaging	Het
Mrc1	T	C	2: 14,314,869 (GRCm39)	S985P	probably damaging	Het
Mst1	A	C	9: 107,959,414 (GRCm39)	K233N	probably damaging	Het
Nr2c2ap	G	A	8: 70,584,653 (GRCm39)	D42N	probably damaging	Het
Ntn1	A	G	11: 68,276,538 (GRCm39)	S137P	probably benign	Het
Pard3	T	C	8: 128,186,867 (GRCm39)		probably null	Het
Pcdh15	T	A	10: 74,430,015 (GRCm39)	D1210E	probably damaging	Het
Pcdhga5	T	C	18: 37,827,774 (GRCm39)	L74P	probably benign	Het
Pcsk5	T	C	19: 17,573,022 (GRCm39)		probably null	Het
Pdia3	T	C	2: 121,244,484 (GRCm39)		probably benign	Het
Pikfyve	A	T	1: 65,235,858 (GRCm39)	R177*	probably null	Het
Pklr	A	G	3: 89,050,566 (GRCm39)	E409G	probably damaging	Het
Plod2	T	C	9: 92,463,376 (GRCm39)	Y154H	probably damaging	Het
Psmc3	T	A	2: 90,884,667 (GRCm39)	D6E	probably benign	Het
Ptpru	T	A	4: 131,547,334 (GRCm39)	N205I	possibly damaging	Het
Rbm6	T	C	9: 107,655,213 (GRCm39)	E1006G	probably benign	Het
Rgl2	T	C	17: 34,154,922 (GRCm39)	V642A	probably benign	Het
Rnf8	T	A	17: 29,845,680 (GRCm39)	H104Q	possibly damaging	Het
Robo4	CGG	CG	9: 37,322,786 (GRCm39)		probably null	Het
Rpa1	T	C	11: 75,204,170 (GRCm39)	N269S	probably damaging	Het
Sdk2	A	G	11: 113,757,857 (GRCm39)	M519T	probably benign	Het
Snx30	A	G	4: 59,885,070 (GRCm39)	S237G	probably benign	Het
Spx	A	G	6: 142,359,766 (GRCm39)	N36S	probably damaging	Het
Stard7	T	C	2: 127,137,416 (GRCm39)	Y289H	probably damaging	Het
Sugp2	T	C	8: 70,709,757 (GRCm39)		probably benign	Het
Susd4	C	T	1: 182,715,043 (GRCm39)	T288I	probably damaging	Het
Tceanc2	T	A	4: 107,034,826 (GRCm39)		probably null	Het
Tm4sf4	T	G	3: 57,341,159 (GRCm39)	V97G	probably benign	Het
Tmtc1	C	T	6: 148,256,629 (GRCm39)		probably benign	Het
Trappc11	C	T	8: 47,958,339 (GRCm39)		probably benign	Het
Triobp	G	T	15: 78,878,591 (GRCm39)	V398F	possibly damaging	Het
Ttll9	T	A	2: 152,804,464 (GRCm39)	S2T	possibly damaging	Het
Ttn	T	C	2: 76,731,320 (GRCm39)		probably benign	Het
Tyw3	A	G	3: 154,300,108 (GRCm39)	C80R	probably damaging	Het
Usp24	T	C	4: 106,242,621 (GRCm39)	V1177A	possibly damaging	Het
Vmn1r65	A	G	7: 6,011,754 (GRCm39)	V160A	probably damaging	Het
Vmn2r104	T	A	17: 20,262,146 (GRCm39)	H328L	probably benign	Het
Vmn2r65	A	C	7: 84,589,849 (GRCm39)	I689S	probably damaging	Het
Wrn	A	G	8: 33,731,129 (GRCm39)	Y1068H	probably damaging	Het
Xpo4	C	A	14: 57,850,866 (GRCm39)	S346I	probably benign	Het
Zc3h3	T	A	15: 75,711,439 (GRCm39)	T341S	probably benign	Het

Other mutations in Zxdc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01468:Zxdc	APN	6	90,350,761 (GRCm39)	missense	probably damaging	1.00
IGL01943:Zxdc	APN	6	90,349,520 (GRCm39)	intron	probably benign
IGL02406:Zxdc	APN	6	90,375,818 (GRCm39)	missense	probably benign	0.00
IGL02596:Zxdc	APN	6	90,350,691 (GRCm39)	critical splice acceptor site	probably null
IGL02623:Zxdc	APN	6	90,359,352 (GRCm39)	missense	probably damaging	0.99
IGL02927:Zxdc	APN	6	90,349,544 (GRCm39)	missense	probably damaging	1.00
IGL03230:Zxdc	APN	6	90,350,785 (GRCm39)	missense	probably damaging	1.00
PIT4378001:Zxdc	UTSW	6	90,350,698 (GRCm39)	missense	probably damaging	1.00
R0071:Zxdc	UTSW	6	90,347,398 (GRCm39)	missense	probably damaging	1.00
R0194:Zxdc	UTSW	6	90,349,519 (GRCm39)	intron	probably benign
R1065:Zxdc	UTSW	6	90,355,885 (GRCm39)	missense	probably damaging	1.00
R1377:Zxdc	UTSW	6	90,355,885 (GRCm39)	missense	probably damaging	1.00
R1405:Zxdc	UTSW	6	90,361,225 (GRCm39)	missense	possibly damaging	0.50
R1405:Zxdc	UTSW	6	90,361,225 (GRCm39)	missense	possibly damaging	0.50
R1692:Zxdc	UTSW	6	90,355,933 (GRCm39)	nonsense	probably null
R2171:Zxdc	UTSW	6	90,359,461 (GRCm39)	missense	possibly damaging	0.53
R3952:Zxdc	UTSW	6	90,347,449 (GRCm39)	splice site	probably null
R4400:Zxdc	UTSW	6	90,346,792 (GRCm39)	missense	probably damaging	1.00
R4660:Zxdc	UTSW	6	90,355,820 (GRCm39)	missense	probably damaging	0.99
R4776:Zxdc	UTSW	6	90,347,500 (GRCm39)	missense	probably damaging	1.00
R4781:Zxdc	UTSW	6	90,349,535 (GRCm39)	missense	probably damaging	0.98
R4843:Zxdc	UTSW	6	90,359,254 (GRCm39)	missense	probably damaging	1.00
R5028:Zxdc	UTSW	6	90,359,320 (GRCm39)	missense	probably benign	0.44
R5260:Zxdc	UTSW	6	90,359,075 (GRCm39)	missense	probably damaging	1.00
R5324:Zxdc	UTSW	6	90,350,782 (GRCm39)	missense	probably damaging	1.00
R5363:Zxdc	UTSW	6	90,359,128 (GRCm39)	missense	probably damaging	0.97
R5436:Zxdc	UTSW	6	90,347,542 (GRCm39)	missense	probably damaging	0.99
R5872:Zxdc	UTSW	6	90,347,281 (GRCm39)	missense	probably damaging	0.99
R5940:Zxdc	UTSW	6	90,347,307 (GRCm39)	missense	probably damaging	1.00
R6762:Zxdc	UTSW	6	90,359,165 (GRCm39)	missense	probably benign
R7175:Zxdc	UTSW	6	90,346,645 (GRCm39)	missense	possibly damaging	0.85
R7197:Zxdc	UTSW	6	90,355,819 (GRCm39)	missense	probably damaging	0.99
R7238:Zxdc	UTSW	6	90,346,642 (GRCm39)	missense	unknown
R7247:Zxdc	UTSW	6	90,361,155 (GRCm39)	missense	unknown
R7917:Zxdc	UTSW	6	90,358,991 (GRCm39)	missense	probably damaging	1.00
R7976:Zxdc	UTSW	6	90,375,749 (GRCm39)	missense	probably benign	0.05
R8792:Zxdc	UTSW	6	90,346,986 (GRCm39)	missense	probably benign	0.00
R8917:Zxdc	UTSW	6	90,359,305 (GRCm39)	missense	probably benign	0.00
R9016:Zxdc	UTSW	6	90,359,254 (GRCm39)	missense	probably damaging	1.00
R9076:Zxdc	UTSW	6	90,349,821 (GRCm39)	missense	probably damaging	1.00
R9190:Zxdc	UTSW	6	90,375,773 (GRCm39)	missense	probably damaging	0.96
R9216:Zxdc	UTSW	6	90,359,189 (GRCm39)	missense	probably benign	0.37

Predicted Primers

PCR Primer
(F):5'- TTCGCCAAGAAGCACCAGTTG -3'
(R):5'- AAACAAGCGACAGTTTGGC -3'

Sequencing Primer
(F):5'- ACCAGTTGAAGGTGCACC -3'
(R):5'- AAGCGACAGTTTGGCCCTTG -3'

Posted On

2016-07-22