Incidental Mutation 'R5311:Or1af1'
| ID |
404828 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or1af1
|
| Ensembl Gene |
ENSMUSG00000068947 |
| Gene Name |
olfactory receptor family 1 subfamily AF member 1 |
| Synonyms |
Olfr366, MOR138-5P, MOR138-6, GA_x6K02T2NLDC-33902472-33903401 |
| MMRRC Submission |
042894-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.081)
|
| Stock # |
R5311 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
37109503-37110432 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 37109633 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 44
(V44A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150608
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000091001]
[ENSMUST00000214897]
|
| AlphaFold |
Q7TRY4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000091001
AA Change: V44A
PolyPhen 2
Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
|
| SMART Domains |
Protein: ENSMUSP00000088524
Gene: ENSMUSG00000068947
AA Change: V44A
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
307 |
5e-62 |
PFAM |
|
Pfam:7tm_1
|
41 |
290 |
3.7e-25 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000214897
AA Change: V44A
PolyPhen 2
Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
|
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.3%
- 20x: 95.2%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ap5z1 |
A |
G |
5: 142,453,442 (GRCm39) |
K137E |
possibly damaging |
Het |
| Atm |
A |
C |
9: 53,429,923 (GRCm39) |
V371G |
probably benign |
Het |
| Cacna2d3 |
A |
G |
14: 29,068,987 (GRCm39) |
Y247H |
probably damaging |
Het |
| Ccdc180 |
T |
C |
4: 45,917,556 (GRCm39) |
V927A |
probably damaging |
Het |
| Cdc45 |
C |
T |
16: 18,614,647 (GRCm39) |
R205H |
probably damaging |
Het |
| Edar |
G |
A |
10: 58,443,257 (GRCm39) |
P290S |
possibly damaging |
Het |
| Ext2 |
T |
C |
2: 93,526,606 (GRCm39) |
I677V |
probably benign |
Het |
| Fam53a |
A |
G |
5: 33,765,080 (GRCm39) |
S209P |
probably damaging |
Het |
| Fshr |
A |
T |
17: 89,318,441 (GRCm39) |
|
probably null |
Het |
| Gfm2 |
G |
A |
13: 97,299,659 (GRCm39) |
A406T |
probably damaging |
Het |
| Gm14295 |
A |
T |
2: 176,502,465 (GRCm39) |
I652L |
probably benign |
Het |
| Gm14403 |
AAACCCTA |
AA |
2: 177,201,448 (GRCm39) |
|
probably benign |
Het |
| Gm5431 |
T |
A |
11: 48,779,716 (GRCm39) |
E402V |
probably damaging |
Het |
| Gm6899 |
GGAGGCCGCCCAGTGGCAGAGGCCGCCCAGTGGCAGAGGC |
GGAGGCCGCCCAGTGGCAGAGGC |
11: 26,543,725 (GRCm39) |
|
probably null |
Het |
| Itih2 |
T |
C |
2: 10,115,346 (GRCm39) |
D342G |
probably benign |
Het |
| Lgi2 |
A |
T |
5: 52,711,827 (GRCm39) |
D164E |
probably damaging |
Het |
| Lrriq1 |
A |
G |
10: 103,050,448 (GRCm39) |
I768T |
probably damaging |
Het |
| Map1a |
C |
A |
2: 121,132,868 (GRCm39) |
A990E |
probably damaging |
Het |
| Mdh1b |
A |
G |
1: 63,759,163 (GRCm39) |
V143A |
probably benign |
Het |
| Mrgprb3 |
C |
T |
7: 48,293,059 (GRCm39) |
C164Y |
probably damaging |
Het |
| Mtpap |
T |
A |
18: 4,386,328 (GRCm39) |
V316E |
probably damaging |
Het |
| Mybpc3 |
T |
A |
2: 90,959,023 (GRCm39) |
C655* |
probably null |
Het |
| Myh15 |
A |
G |
16: 48,986,204 (GRCm39) |
E1558G |
possibly damaging |
Het |
| Mylk |
A |
G |
16: 34,742,127 (GRCm39) |
T880A |
probably benign |
Het |
| Nckap1 |
T |
A |
2: 80,370,466 (GRCm39) |
D408V |
probably damaging |
Het |
| Nos3 |
A |
T |
5: 24,582,343 (GRCm39) |
H605L |
probably benign |
Het |
| Nrxn2 |
C |
A |
19: 6,581,428 (GRCm39) |
D411E |
probably benign |
Het |
| Or8j3b |
T |
A |
2: 86,205,094 (GRCm39) |
I221L |
possibly damaging |
Het |
| Pde4d |
C |
A |
13: 109,769,398 (GRCm39) |
P29T |
probably benign |
Het |
| Pde4d |
C |
T |
13: 109,769,399 (GRCm39) |
P29L |
probably benign |
Het |
| Pkhd1 |
A |
G |
1: 20,636,094 (GRCm39) |
V412A |
possibly damaging |
Het |
| Rev1 |
T |
A |
1: 38,118,474 (GRCm39) |
I480L |
probably benign |
Het |
| Rimbp3 |
A |
G |
16: 17,028,708 (GRCm39) |
T711A |
probably benign |
Het |
| RP23-191E1.1 |
T |
A |
3: 106,204,784 (GRCm39) |
|
noncoding transcript |
Het |
| Serpina11 |
A |
T |
12: 103,952,221 (GRCm39) |
I183N |
probably damaging |
Het |
| Siglec1 |
T |
C |
2: 130,921,236 (GRCm39) |
H645R |
probably damaging |
Het |
| Skint7 |
G |
A |
4: 111,837,501 (GRCm39) |
R93H |
probably damaging |
Het |
| Slfn8 |
T |
C |
11: 82,894,910 (GRCm39) |
E632G |
probably damaging |
Het |
| Tmem8b |
G |
A |
4: 43,673,992 (GRCm39) |
V208I |
probably benign |
Het |
| Trps1 |
G |
A |
15: 50,528,156 (GRCm39) |
T658I |
probably damaging |
Het |
| Ubash3a |
A |
G |
17: 31,438,691 (GRCm39) |
T287A |
probably damaging |
Het |
| Ugt2b35 |
G |
A |
5: 87,159,139 (GRCm39) |
W444* |
probably null |
Het |
| Vmn1r219 |
T |
A |
13: 23,347,063 (GRCm39) |
V84D |
probably damaging |
Het |
| Vmn2r10 |
T |
C |
5: 109,154,121 (GRCm39) |
Y61C |
probably damaging |
Het |
| Vmn2r104 |
G |
A |
17: 20,250,163 (GRCm39) |
P703S |
probably damaging |
Het |
| Wdsub1 |
T |
A |
2: 59,708,873 (GRCm39) |
|
probably benign |
Het |
| Zfp667 |
A |
G |
7: 6,308,715 (GRCm39) |
Q461R |
probably benign |
Het |
| Zfp941 |
C |
A |
7: 140,391,872 (GRCm39) |
G496* |
probably null |
Het |
|
| Other mutations in Or1af1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01691:Or1af1
|
APN |
2 |
37,110,038 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01925:Or1af1
|
APN |
2 |
37,110,058 (GRCm39) |
missense |
probably benign |
0.14 |
|
IGL02355:Or1af1
|
APN |
2 |
37,109,681 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02362:Or1af1
|
APN |
2 |
37,109,681 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02671:Or1af1
|
APN |
2 |
37,110,257 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02821:Or1af1
|
APN |
2 |
37,110,112 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0603:Or1af1
|
UTSW |
2 |
37,110,118 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0707:Or1af1
|
UTSW |
2 |
37,110,208 (GRCm39) |
nonsense |
probably null |
|
|
R1204:Or1af1
|
UTSW |
2 |
37,109,651 (GRCm39) |
missense |
probably benign |
|
|
R1457:Or1af1
|
UTSW |
2 |
37,109,671 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R1509:Or1af1
|
UTSW |
2 |
37,109,966 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1676:Or1af1
|
UTSW |
2 |
37,109,653 (GRCm39) |
nonsense |
probably null |
|
|
R1823:Or1af1
|
UTSW |
2 |
37,110,344 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2163:Or1af1
|
UTSW |
2 |
37,110,089 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2909:Or1af1
|
UTSW |
2 |
37,110,188 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R3696:Or1af1
|
UTSW |
2 |
37,110,188 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R3698:Or1af1
|
UTSW |
2 |
37,110,188 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4004:Or1af1
|
UTSW |
2 |
37,109,960 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4655:Or1af1
|
UTSW |
2 |
37,109,885 (GRCm39) |
missense |
probably benign |
0.03 |
|
R5385:Or1af1
|
UTSW |
2 |
37,109,599 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R5433:Or1af1
|
UTSW |
2 |
37,109,684 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5499:Or1af1
|
UTSW |
2 |
37,109,777 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5707:Or1af1
|
UTSW |
2 |
37,109,901 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6330:Or1af1
|
UTSW |
2 |
37,110,136 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6338:Or1af1
|
UTSW |
2 |
37,109,834 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6666:Or1af1
|
UTSW |
2 |
37,110,331 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6872:Or1af1
|
UTSW |
2 |
37,109,989 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R7412:Or1af1
|
UTSW |
2 |
37,109,774 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R7789:Or1af1
|
UTSW |
2 |
37,109,672 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7831:Or1af1
|
UTSW |
2 |
37,109,723 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8220:Or1af1
|
UTSW |
2 |
37,109,791 (GRCm39) |
missense |
probably benign |
0.06 |
|
R8391:Or1af1
|
UTSW |
2 |
37,110,277 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8708:Or1af1
|
UTSW |
2 |
37,109,956 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9049:Or1af1
|
UTSW |
2 |
37,109,959 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9231:Or1af1
|
UTSW |
2 |
37,109,989 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R9294:Or1af1
|
UTSW |
2 |
37,110,122 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R9471:Or1af1
|
UTSW |
2 |
37,110,400 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9595:Or1af1
|
UTSW |
2 |
37,110,281 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCATGAACTGGAATACCTCATG -3'
(R):5'- TACATTTGAGTGAGGCACTGG -3'
Sequencing Primer
(F):5'- GAATCCCCTCCATCAGGCTG -3'
(R):5'- CACTGGGCAAAGAGGATTGTCTTTC -3'
|
| Posted On |
2016-07-22 |
Incidental Mutation