Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03027:Lpar5'

408228

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lpar5

Ensembl Gene

ENSMUSG00000067714

Gene Name

lysophosphatidic acid receptor 5

Synonyms

Gpr92, LOC381810, GPR93, LPA5

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.074) question?

Stock #

IGL03027

Quality Score

Status

Chromosome

Chromosomal Location

125044883-125059435 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 125059203 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 308 (L308Q)

Ref Sequence

ENSEMBL: ENSMUSP00000132511 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088292] [ENSMUST00000140346] [ENSMUST00000171989]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000088292
AA Change: L308Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000085630
Gene: ENSMUSG00000067714
AA Change: L308Q

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	313	7.4e-40	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000140346

SMART Domains

Protein: ENSMUSP00000119904
Gene: ENSMUSG00000067714

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	164	1.5e-30	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000171989
AA Change: L308Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000132511
Gene: ENSMUSG00000067714
AA Change: L308Q

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	313	1.1e-48	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203956

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the rhodopsin class of G protein-coupled transmembrane receptors. This protein transmits extracellular signals from lysophosphatidic acid to cells through heterotrimeric G proteins and mediates numerous cellular processes. Many G protein receptors serve as targets for pharmaceutical drugs. Transcript variants of this gene have been described.[provided by RefSeq, Dec 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit resistance to neuropathic pain and myelin sheath alterations. Mice homozygous for a different targeted allele exhibit decreased nociception sensitivity, decreased anxiety-related response and enhanced coordination and spatial learning. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrf1	A	T	17: 43,607,605 (GRCm39)	Y108F	probably damaging	Het
Afap1	T	C	5: 36,119,094 (GRCm39)	I243T	probably benign	Het
Ano5	A	G	7: 51,216,025 (GRCm39)	D320G	probably damaging	Het
Arhgef1	T	A	7: 24,623,157 (GRCm39)	I423K	probably damaging	Het
Casp9	A	G	4: 141,539,584 (GRCm39)	E410G	probably benign	Het
Ccdc39	A	C	3: 33,884,267 (GRCm39)	H358Q	probably benign	Het
Ces5a	A	T	8: 94,249,742 (GRCm39)		probably null	Het
Clip1	A	T	5: 123,759,919 (GRCm39)	M935K	probably benign	Het
Col12a1	A	G	9: 79,548,833 (GRCm39)	Y2171H	probably benign	Het
Cyp2f2	A	T	7: 26,831,996 (GRCm39)	N417I	possibly damaging	Het
Dock3	G	A	9: 106,870,677 (GRCm39)	P579L	probably damaging	Het
Dock7	T	C	4: 98,866,164 (GRCm39)	M1209V	probably benign	Het
Dock7	T	C	4: 98,958,450 (GRCm39)	T334A	possibly damaging	Het
Dst	A	T	1: 34,225,106 (GRCm39)	I1171F	possibly damaging	Het
Eya1	G	T	1: 14,241,190 (GRCm39)	H576N	probably damaging	Het
Fam117a	A	G	11: 95,268,399 (GRCm39)	T267A	probably benign	Het
Fam43a	C	T	16: 30,419,922 (GRCm39)	R169C	probably damaging	Het
Gabra6	T	C	11: 42,205,980 (GRCm39)	H291R	probably damaging	Het
Gm7145	T	C	1: 117,895,417 (GRCm39)	S27P	probably benign	Het
Gpt	C	T	15: 76,582,289 (GRCm39)		probably benign	Het
Grip2	A	G	6: 91,755,852 (GRCm39)	I586T	probably benign	Het
Hif1a	C	T	12: 73,987,251 (GRCm39)	P448L	probably benign	Het
Hmcn1	C	T	1: 150,684,290 (GRCm39)	V427I	probably benign	Het
Ipo8	C	A	6: 148,678,737 (GRCm39)	V954L	probably benign	Het
Kdm5a	G	T	6: 120,351,951 (GRCm39)		probably null	Het
Klhl36	T	A	8: 120,603,229 (GRCm39)	S495T	probably benign	Het
Lrp2	T	G	2: 69,367,897 (GRCm39)	D205A	probably benign	Het
Lrriq1	A	G	10: 103,063,057 (GRCm39)	I83T	probably benign	Het
Mapk8ip2	A	T	15: 89,342,310 (GRCm39)	D507V	probably damaging	Het
Mical1	T	C	10: 41,355,501 (GRCm39)		probably benign	Het
Myef2	T	A	2: 124,930,954 (GRCm39)	H539L	possibly damaging	Het
Myh7	T	C	14: 55,221,007 (GRCm39)	E972G	probably damaging	Het
Naip5	A	G	13: 100,359,524 (GRCm39)	Y571H	probably benign	Het
Nfasc	T	A	1: 132,538,207 (GRCm39)	N478I	probably damaging	Het
Or6c1b	A	G	10: 129,272,780 (GRCm39)	Y33C	probably damaging	Het
Pde2a	A	T	7: 101,130,627 (GRCm39)	Q89L	probably benign	Het
Ppard	C	A	17: 28,518,765 (GRCm39)	T422K	possibly damaging	Het
Ppp1r13b	G	T	12: 111,796,830 (GRCm39)	Y904*	probably null	Het
Ptx4	T	A	17: 25,344,022 (GRCm39)	I424K	possibly damaging	Het
Rab19	A	G	6: 39,360,927 (GRCm39)	D25G	probably damaging	Het
Rbl2	T	A	8: 91,805,534 (GRCm39)	I197N	possibly damaging	Het
Rttn	A	G	18: 88,997,814 (GRCm39)	D273G	probably damaging	Het
Sec16a	G	A	2: 26,313,601 (GRCm39)	R1920C	probably benign	Het
Sec23b	A	T	2: 144,429,465 (GRCm39)	N731I	possibly damaging	Het
Serpinb9d	G	A	13: 33,386,698 (GRCm39)	W255*	probably null	Het
Sim2	G	A	16: 93,910,351 (GRCm39)		probably benign	Het
Tbl3	T	C	17: 24,920,167 (GRCm39)		probably null	Het
Tmem176b	C	T	6: 48,812,573 (GRCm39)	A131T	probably damaging	Het
Tmem181a	T	A	17: 6,348,494 (GRCm39)	V332D	probably damaging	Het
Trgc1	G	T	13: 19,398,563 (GRCm39)	G97*	probably null	Het
Tuba3b	T	A	6: 145,565,117 (GRCm39)	L195Q	probably damaging	Het
Ubc	A	T	5: 125,464,565 (GRCm39)	V254D	probably damaging	Het
Ube4b	G	T	4: 149,465,734 (GRCm39)	P239T	probably damaging	Het
Vars1	G	T	17: 35,232,663 (GRCm39)	M862I	probably damaging	Het
Vmn2r66	T	C	7: 84,644,777 (GRCm39)		probably benign	Het
Wdr59	G	A	8: 112,188,824 (GRCm39)	A720V	probably damaging	Het
Zfhx3	G	A	8: 109,519,820 (GRCm39)	R314Q	probably damaging	Het

Other mutations in Lpar5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01719:Lpar5	APN	6	125,058,969 (GRCm39)	missense	possibly damaging	0.94
IGL01830:Lpar5	APN	6	125,058,785 (GRCm39)	missense	probably benign	0.01
IGL01975:Lpar5	APN	6	125,058,750 (GRCm39)	missense	probably damaging	0.99
IGL02021:Lpar5	APN	6	125,058,955 (GRCm39)	nonsense	probably null
IGL02718:Lpar5	APN	6	125,059,207 (GRCm39)	missense	probably damaging	1.00
IGL03300:Lpar5	APN	6	125,059,203 (GRCm39)	missense	probably damaging	1.00
F5770:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
R0633:Lpar5	UTSW	6	125,058,954 (GRCm39)	missense	probably benign	0.25
R1639:Lpar5	UTSW	6	125,058,564 (GRCm39)	missense	probably damaging	1.00
R1822:Lpar5	UTSW	6	125,058,378 (GRCm39)	missense	possibly damaging	0.76
R2227:Lpar5	UTSW	6	125,058,098 (GRCm39)	critical splice acceptor site	probably null
R4019:Lpar5	UTSW	6	125,058,638 (GRCm39)	missense	probably damaging	1.00
R4288:Lpar5	UTSW	6	125,058,827 (GRCm39)	missense	probably benign	0.00
R4705:Lpar5	UTSW	6	125,059,170 (GRCm39)	missense	possibly damaging	0.64
R4787:Lpar5	UTSW	6	125,059,461 (GRCm39)	splice site	probably null
R5027:Lpar5	UTSW	6	125,059,110 (GRCm39)	missense	possibly damaging	0.69
R6114:Lpar5	UTSW	6	125,058,639 (GRCm39)	missense	probably damaging	1.00
R7197:Lpar5	UTSW	6	125,059,347 (GRCm39)	missense	probably benign	0.00
R7779:Lpar5	UTSW	6	125,059,207 (GRCm39)	missense	probably damaging	1.00
R8193:Lpar5	UTSW	6	125,058,302 (GRCm39)	missense	probably benign
R8264:Lpar5	UTSW	6	125,058,465 (GRCm39)	missense	probably damaging	1.00
R9460:Lpar5	UTSW	6	125,058,234 (GRCm39)	start gained	probably benign
R9628:Lpar5	UTSW	6	125,058,948 (GRCm39)	missense	probably damaging	0.96
V7580:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
V7581:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
V7582:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
Z1176:Lpar5	UTSW	6	125,059,035 (GRCm39)	missense	probably damaging	1.00
Z1176:Lpar5	UTSW	6	125,058,342 (GRCm39)	missense	possibly damaging	0.92
Z1177:Lpar5	UTSW	6	125,058,981 (GRCm39)	missense	probably damaging	1.00

Posted On

2016-08-02