Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03031:Hoxc9'

408464

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Hoxc9

Ensembl Gene

ENSMUSG00000036139

Gene Name

homeobox C9

Synonyms

Hox-3.2

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL03031

Quality Score

Status

Chromosome

Chromosomal Location

102885467-102893324 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 102892522 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 245 (M245T)

Ref Sequence

ENSEMBL: ENSMUSP00000001706 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001706] [ENSMUST00000173306]

AlphaFold

P09633

Predicted Effect

probably damaging
Transcript: ENSMUST00000001706
AA Change: M245T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000001706
Gene: ENSMUSG00000036139
AA Change: M245T

Domain	Start	End	E-Value	Type
Pfam:Hox9_act	1	179	2e-63	PFAM
HOX	192	254	8.84e-28	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173306

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174869

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene grow more slowly than normal and develop hunched backs. Forward transformations seen in vertebrae from L1 and forward to around T10. Abnormalities in the sternum and ribs attachments to the sternum are also seen. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca12	T	C	1: 71,353,183 (GRCm39)	D753G	probably benign	Het
Adat2	T	C	10: 13,432,590 (GRCm39)		probably benign	Het
Ahsa2	A	G	11: 23,440,426 (GRCm39)	L275S	probably benign	Het
Arhgef38	C	T	3: 132,837,828 (GRCm39)	D118N	possibly damaging	Het
Bicra	A	T	7: 15,709,726 (GRCm39)	H1097Q	probably benign	Het
C4b	T	C	17: 34,950,104 (GRCm39)	T1389A	possibly damaging	Het
Cd180	A	G	13: 102,841,535 (GRCm39)	S194G	probably benign	Het
Chgb	C	A	2: 132,635,434 (GRCm39)	Q459K	probably benign	Het
Clvs1	G	T	4: 9,449,385 (GRCm39)		probably benign	Het
Cpox	G	A	16: 58,492,923 (GRCm39)	G186R	probably damaging	Het
Cul5	A	G	9: 53,553,975 (GRCm39)		probably benign	Het
Epsti1	G	A	14: 78,212,021 (GRCm39)	R249K	probably benign	Het
Gabrg1	A	T	5: 70,952,025 (GRCm39)	Y90*	probably null	Het
Gabrp	T	C	11: 33,504,980 (GRCm39)	R274G	probably damaging	Het
Gm6401	C	T	14: 41,788,851 (GRCm39)	E73K	possibly damaging	Het
Hectd4	C	T	5: 121,486,857 (GRCm39)	T3284M	possibly damaging	Het
Lpar6	T	C	14: 73,476,882 (GRCm39)	V281A	possibly damaging	Het
Med18	G	T	4: 132,186,924 (GRCm39)	Q192K	possibly damaging	Het
Mis18bp1	A	G	12: 65,208,704 (GRCm39)	V3A	probably benign	Het
Mpped2	G	T	2: 106,613,968 (GRCm39)		probably benign	Het
Ms4a10	A	G	19: 10,946,035 (GRCm39)	V32A	probably benign	Het
Mthfd1l	T	A	10: 3,968,601 (GRCm39)		probably null	Het
Myh1	A	T	11: 67,097,213 (GRCm39)	Q422L	possibly damaging	Het
Myo3b	A	T	2: 70,085,721 (GRCm39)	Q819L	possibly damaging	Het
Ncoa1	G	A	12: 4,324,818 (GRCm39)	T921I	possibly damaging	Het
Or10d4b	A	G	9: 39,534,694 (GRCm39)	I92V	probably damaging	Het
Or6c214	A	G	10: 129,591,238 (GRCm39)	L27P	possibly damaging	Het
Or8c16	A	C	9: 38,130,361 (GRCm39)	T81P	probably damaging	Het
Phf3	A	G	1: 30,843,734 (GRCm39)	S1742P	probably benign	Het
Plxdc2	G	A	2: 16,655,043 (GRCm39)		probably null	Het
Poc5	A	G	13: 96,538,123 (GRCm39)	T263A	probably benign	Het
Prss41	T	A	17: 24,061,396 (GRCm39)	I132F	probably damaging	Het
Pxylp1	A	G	9: 96,707,195 (GRCm39)	I329T	probably benign	Het
Rbm27	T	C	18: 42,466,464 (GRCm39)		probably null	Het
Rnps1-ps	T	C	6: 7,982,857 (GRCm39)		noncoding transcript	Het
Rpgrip1l	A	T	8: 91,987,411 (GRCm39)	V882E	probably damaging	Het
Sec16b	T	C	1: 157,388,369 (GRCm39)	S579P	probably benign	Het
Senp7	A	G	16: 55,996,249 (GRCm39)	E776G	probably damaging	Het
Smc2	A	G	4: 52,449,638 (GRCm39)	I207V	probably benign	Het
Spata31e5	A	G	1: 28,817,664 (GRCm39)	F123L	probably benign	Het
Spats2	A	G	15: 99,078,569 (GRCm39)	T211A	probably benign	Het
Sphkap	A	T	1: 83,254,552 (GRCm39)	S779T	probably damaging	Het
Syt11	A	T	3: 88,656,148 (GRCm39)	M1K	probably null	Het
Tacc2	A	G	7: 130,225,585 (GRCm39)	T757A	possibly damaging	Het
Tecta	A	C	9: 42,256,789 (GRCm39)	M1629R	probably benign	Het
Ufsp2	T	A	8: 46,437,137 (GRCm39)	I101N	probably damaging	Het
Unc13b	T	A	4: 43,235,368 (GRCm39)	C892S	probably damaging	Het
Ush1c	A	G	7: 45,874,361 (GRCm39)		probably benign	Het
Vwde	A	T	6: 13,208,381 (GRCm39)	V167E	probably benign	Het
Wdfy4	A	G	14: 32,862,608 (GRCm39)	L588P	probably damaging	Het
Zfyve1	T	C	12: 83,621,595 (GRCm39)	T267A	probably damaging	Het

Other mutations in Hoxc9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01413:Hoxc9	APN	15	102,892,432 (GRCm39)	missense	probably damaging	1.00
IGL01418:Hoxc9	APN	15	102,892,432 (GRCm39)	missense	probably damaging	1.00
R0498:Hoxc9	UTSW	15	102,892,359 (GRCm39)	missense	probably damaging	1.00
R1436:Hoxc9	UTSW	15	102,890,304 (GRCm39)	missense	probably benign	0.03
R2059:Hoxc9	UTSW	15	102,892,555 (GRCm39)	missense	probably benign	0.01
R2414:Hoxc9	UTSW	15	102,892,540 (GRCm39)	missense	probably damaging	1.00
R2900:Hoxc9	UTSW	15	102,890,185 (GRCm39)	missense	probably benign	0.00
R3807:Hoxc9	UTSW	15	102,890,116 (GRCm39)	missense	possibly damaging	0.94
R3821:Hoxc9	UTSW	15	102,890,596 (GRCm39)	missense	probably benign	0.32
R4824:Hoxc9	UTSW	15	102,890,225 (GRCm39)	nonsense	probably null
R5165:Hoxc9	UTSW	15	102,892,432 (GRCm39)	missense	probably damaging	1.00
R5700:Hoxc9	UTSW	15	102,890,313 (GRCm39)	missense	possibly damaging	0.65
R5701:Hoxc9	UTSW	15	102,890,313 (GRCm39)	missense	possibly damaging	0.65
R6003:Hoxc9	UTSW	15	102,890,311 (GRCm39)	missense	probably benign	0.15
R6145:Hoxc9	UTSW	15	102,892,391 (GRCm39)	missense	probably damaging	1.00
R6570:Hoxc9	UTSW	15	102,890,185 (GRCm39)	missense	probably benign	0.00
R7312:Hoxc9	UTSW	15	102,890,593 (GRCm39)	missense	probably benign	0.02
R7434:Hoxc9	UTSW	15	102,892,414 (GRCm39)	missense	probably damaging	1.00
R8080:Hoxc9	UTSW	15	102,890,551 (GRCm39)	missense	probably benign	0.22
R8519:Hoxc9	UTSW	15	102,892,341 (GRCm39)	missense	probably damaging	1.00
R8792:Hoxc9	UTSW	15	102,890,226 (GRCm39)	missense	probably benign	0.00
R9705:Hoxc9	UTSW	15	102,890,362 (GRCm39)	missense	possibly damaging	0.80
R9717:Hoxc9	UTSW	15	102,890,551 (GRCm39)	missense	probably benign	0.22

Posted On

2016-08-02