Incidental Mutation 'IGL03054:Usp15'
| ID |
409183 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Usp15
|
| Ensembl Gene |
ENSMUSG00000020124 |
| Gene Name |
ubiquitin specific peptidase 15 |
| Synonyms |
Gcap18, E430033I05Rik, 4921514G19Rik |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL03054 (G1)
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
10 |
| Chromosomal Location |
122940911-123032900 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
C to A
at 122961836 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151244
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000020334]
[ENSMUST00000220377]
|
| AlphaFold |
Q8R5H1 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000020334
|
| SMART Domains |
Protein: ENSMUSP00000020334
Gene: ENSMUSG00000020124
| Domain | Start | End | E-Value | Type |
|---|
|
DUSP
|
23 |
121 |
1.5e-46 |
SMART |
|
Pfam:Ubiquitin_3
|
135 |
222 |
3.7e-38 |
PFAM |
|
low complexity region
|
242 |
262 |
N/A |
INTRINSIC |
|
Pfam:UCH
|
288 |
930 |
6.8e-86 |
PFAM |
|
Pfam:UCH_1
|
289 |
506 |
1.1e-5 |
PFAM |
|
Pfam:USP7_C2
|
460 |
608 |
2e-7 |
PFAM |
|
Pfam:UCH_1
|
756 |
912 |
1.3e-11 |
PFAM |
|
low complexity region
|
959 |
976 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000218079
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000219413
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000219937
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000219992
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000220377
|
| Coding Region Coverage |
- 1x: 0.0%
- 3x: 0.0%
- 10x: 0.0%
- 20x: 0.0%
|
| Validation Efficiency |
98% (43/44) |
| MGI Phenotype |
FUNCTION: The protein encoded by this gene is a member of the large ubiquitin specific protease (Usp) family of proteins. These proteins are known to cleave ubiquitin, and contain a conserved cysteine residue (Cys box) and two conserved histidine residues (His box) that are thought to form part of the active site of the protease. This protein has been shown to cleave both the ubiquitin-proline and the ubiquitin-methionine bonds in vitro. This protein is thought to regulate many cellular processes through its deubiquitination activity, including the transforming growth factor beta (TGF-beta) pathway. Cardiac-specific overexpression of the human ortholog of this gene in mice causes enlargement of the heart that is more pronounced in the atrium than in the ventricle. This gene has two pseudogenes on chromosome 14. Alternative splicing results in multiple transcript variants that encode multiple protein isoforms.[provided by RefSeq, Aug 2014]
PHENOTYPE: Mice homozygous for a knock-out allele or ENU induced allele exhibit resistance to pathological neuroinflammation. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933416I08Rik |
TCC |
TCCC |
X: 52,692,862 (GRCm39) |
|
noncoding transcript |
Het |
| Acsbg3 |
A |
G |
17: 57,193,528 (GRCm39) |
T625A |
possibly damaging |
Het |
| Aloxe3 |
T |
C |
11: 69,020,433 (GRCm39) |
V159A |
possibly damaging |
Het |
| Atp13a2 |
T |
A |
4: 140,734,279 (GRCm39) |
C1134S |
possibly damaging |
Het |
| Ccdc40 |
G |
A |
11: 119,154,027 (GRCm39) |
E1100K |
possibly damaging |
Het |
| Ceacam5 |
A |
T |
7: 17,493,379 (GRCm39) |
T801S |
possibly damaging |
Het |
| Cilp |
TGGG |
TGG |
9: 65,187,412 (GRCm39) |
|
probably null |
Het |
| Col4a2 |
T |
C |
8: 11,498,270 (GRCm39) |
I1693T |
probably damaging |
Het |
| Crb1 |
CG |
C |
1: 139,164,824 (GRCm39) |
|
probably null |
Het |
| Dab2 |
G |
T |
15: 6,447,707 (GRCm39) |
|
probably benign |
Het |
| Dao |
T |
C |
5: 114,162,963 (GRCm39) |
L345P |
probably damaging |
Het |
| Dis3l |
A |
G |
9: 64,217,722 (GRCm39) |
|
probably null |
Het |
| Egr3 |
C |
T |
14: 70,316,561 (GRCm39) |
T124M |
probably damaging |
Het |
| Gng7 |
G |
T |
10: 80,787,485 (GRCm39) |
F59L |
probably damaging |
Het |
| Itgb4 |
C |
A |
11: 115,891,166 (GRCm39) |
Y1190* |
probably null |
Het |
| Lacc1 |
T |
C |
14: 77,268,355 (GRCm39) |
M319V |
possibly damaging |
Het |
| Mapkbp1 |
A |
G |
2: 119,845,881 (GRCm39) |
T417A |
probably damaging |
Het |
| Mier3 |
C |
T |
13: 111,822,848 (GRCm39) |
|
probably benign |
Het |
| Mlxipl |
A |
G |
5: 135,162,110 (GRCm39) |
D569G |
possibly damaging |
Het |
| Mmp1a |
TG |
TGG |
9: 7,465,083 (GRCm38) |
|
probably null |
Het |
| Mrpl15 |
A |
G |
1: 4,855,794 (GRCm39) |
|
probably null |
Het |
| Neb |
T |
C |
2: 52,161,334 (GRCm39) |
N2153D |
probably damaging |
Het |
| Nlrp9c |
A |
G |
7: 26,081,701 (GRCm39) |
|
probably null |
Het |
| Npepps |
C |
T |
11: 97,132,614 (GRCm39) |
|
probably benign |
Het |
| Or13a17 |
T |
G |
7: 140,271,623 (GRCm39) |
S268R |
probably benign |
Het |
| Or1j10 |
A |
T |
2: 36,266,944 (GRCm39) |
H52L |
possibly damaging |
Het |
| Or52z12 |
C |
A |
7: 103,234,047 (GRCm39) |
H273N |
probably benign |
Het |
| Psmc4 |
T |
C |
7: 27,746,605 (GRCm39) |
Y160C |
probably damaging |
Het |
| Rims1 |
T |
C |
1: 22,360,333 (GRCm39) |
Y131C |
probably damaging |
Het |
| Riok1 |
G |
A |
13: 38,231,291 (GRCm39) |
G183D |
probably damaging |
Het |
| Samd9l |
T |
A |
6: 3,376,023 (GRCm39) |
I413F |
probably damaging |
Het |
| Tnfrsf22 |
A |
G |
7: 143,194,532 (GRCm39) |
Y132H |
probably damaging |
Het |
| Ttn |
T |
A |
2: 76,726,104 (GRCm39) |
|
probably benign |
Het |
| Tulp1 |
A |
G |
17: 28,578,287 (GRCm39) |
|
probably benign |
Het |
| Wdr7 |
G |
T |
18: 63,958,192 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Usp15 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00498:Usp15
|
APN |
10 |
122,949,501 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02148:Usp15
|
APN |
10 |
122,963,742 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02737:Usp15
|
APN |
10 |
122,966,937 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03163:Usp15
|
APN |
10 |
123,007,049 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1755:Usp15
|
UTSW |
10 |
122,968,949 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1981:Usp15
|
UTSW |
10 |
122,960,946 (GRCm39) |
splice site |
probably benign |
|
|
R2049:Usp15
|
UTSW |
10 |
122,955,042 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3037:Usp15
|
UTSW |
10 |
122,999,522 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3698:Usp15
|
UTSW |
10 |
123,017,643 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3828:Usp15
|
UTSW |
10 |
123,032,775 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R3845:Usp15
|
UTSW |
10 |
122,955,040 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4838:Usp15
|
UTSW |
10 |
122,963,662 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4954:Usp15
|
UTSW |
10 |
122,967,303 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5204:Usp15
|
UTSW |
10 |
122,949,545 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5274:Usp15
|
UTSW |
10 |
123,004,256 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5387:Usp15
|
UTSW |
10 |
122,967,191 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5474:Usp15
|
UTSW |
10 |
122,963,950 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5501:Usp15
|
UTSW |
10 |
123,011,804 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5665:Usp15
|
UTSW |
10 |
122,966,892 (GRCm39) |
nonsense |
probably null |
|
|
R5846:Usp15
|
UTSW |
10 |
123,017,647 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5850:Usp15
|
UTSW |
10 |
122,960,417 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6163:Usp15
|
UTSW |
10 |
123,004,210 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6735:Usp15
|
UTSW |
10 |
123,004,272 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R6828:Usp15
|
UTSW |
10 |
122,963,894 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7170:Usp15
|
UTSW |
10 |
123,007,100 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7197:Usp15
|
UTSW |
10 |
122,966,910 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R7351:Usp15
|
UTSW |
10 |
122,968,904 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7368:Usp15
|
UTSW |
10 |
123,032,798 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R7447:Usp15
|
UTSW |
10 |
123,011,786 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8099:Usp15
|
UTSW |
10 |
122,982,826 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R8169:Usp15
|
UTSW |
10 |
122,961,798 (GRCm39) |
missense |
|
|
|
R8316:Usp15
|
UTSW |
10 |
122,959,848 (GRCm39) |
missense |
|
|
|
R8795:Usp15
|
UTSW |
10 |
122,988,953 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9005:Usp15
|
UTSW |
10 |
122,982,703 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R9023:Usp15
|
UTSW |
10 |
122,961,498 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R9156:Usp15
|
UTSW |
10 |
122,949,553 (GRCm39) |
missense |
probably benign |
0.13 |
|
R9198:Usp15
|
UTSW |
10 |
123,004,143 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9278:Usp15
|
UTSW |
10 |
123,007,112 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R9592:Usp15
|
UTSW |
10 |
122,999,522 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Usp15
|
UTSW |
10 |
123,032,866 (GRCm39) |
start gained |
probably benign |
|
|
| Posted On |
2016-08-02 |
Incidental Mutation