Mutagenetix > Incidental Mutation

Incidental Mutation 'R0066:Slitrk6'

41112

Institutional Source

Beutler Lab

Gene Symbol

Slitrk6

Ensembl Gene

ENSMUSG00000045871

Gene Name

SLIT and NTRK-like family, member 6

Synonyms

4832410J21Rik

MMRRC Submission

038357-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.148) question?

Stock #

R0066 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

110986012-110992581 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 110987364 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Histidine at position 781 (L781H)

Ref Sequence

ENSEMBL: ENSMUSP00000077492 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078386]

AlphaFold

Q8C110

Predicted Effect

probably damaging
Transcript: ENSMUST00000078386
AA Change: L781H

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000077492
Gene: ENSMUSG00000045871
AA Change: L781H

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Blast:LRRNT	30	68	4e-15	BLAST
LRR	87	110	1.71e1	SMART
LRR	111	134	3.07e-1	SMART
LRR	135	158	4.44e0	SMART
LRR_TYP	159	182	2.09e-3	SMART
LRR	185	206	6.23e1	SMART
LRRCT	218	268	5.61e-5	SMART
low complexity region	287	301	N/A	INTRINSIC
Blast:LRRNT	327	364	2e-17	BLAST
LRR	388	408	2.68e1	SMART
LRR_TYP	409	432	3.63e-3	SMART
LRR_TYP	433	456	6.23e-2	SMART
LRR_TYP	457	480	3.69e-4	SMART
low complexity region	501	513	N/A	INTRINSIC
LRRCT	516	566	1.53e-6	SMART
transmembrane domain	610	632	N/A	INTRINSIC
low complexity region	634	642	N/A	INTRINSIC

Meta Mutation Damage Score

0.1203

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 93.0%

Validation Efficiency

100% (107/107)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the SLITRK protein family. Members of this family are integral membrane proteins that are characterized by two N-terminal leucine-rich repeat (LRR) domains and a C-terminal region that shares homology with trk neurotrophin receptors. This protein functions as a regulator of neurite outgrowth required for normal hearing and vision. Mutations in this gene are a cause of myopia and deafness. [provided by RefSeq, Dec 2014]
PHENOTYPE: Homozygous deficient mice show pronounced reduction in cochlear innervation. Innervation to the posterior crista is variably impaired and a there is a loss of neurons in the spiral and vestibular ganglia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1810064F22Rik	A	G	9: 22,119,177 (GRCm39)		noncoding transcript	Het
5530400C23Rik	A	T	6: 133,269,287 (GRCm39)		probably benign	Het
Aco2	T	C	15: 81,787,666 (GRCm39)		probably benign	Het
Arap3	A	T	18: 38,129,760 (GRCm39)	S134T	probably benign	Het
Arsa	T	A	15: 89,358,539 (GRCm39)	M288L	possibly damaging	Het
Atg2b	A	T	12: 105,614,708 (GRCm39)	D1074E	probably benign	Het
Baiap2l1	A	T	5: 144,221,372 (GRCm39)	I174N	probably damaging	Het
Bpifb9a	A	T	2: 154,108,761 (GRCm39)	N421Y	possibly damaging	Het
Btn2a2	T	A	13: 23,662,655 (GRCm39)	I432L	probably benign	Het
Ccdc150	A	G	1: 54,395,850 (GRCm39)	I778V	probably benign	Het
Cd200r2	G	A	16: 44,730,037 (GRCm39)	V194I	possibly damaging	Het
Cep350	A	C	1: 155,786,964 (GRCm39)	L1421R	probably damaging	Het
Col24a1	G	A	3: 145,250,899 (GRCm39)	A1633T	probably damaging	Het
Col6a6	A	T	9: 105,579,412 (GRCm39)	C1938S	probably damaging	Het
Cspg4	A	T	9: 56,795,418 (GRCm39)	D1051V	probably damaging	Het
Cstf1	T	A	2: 172,214,976 (GRCm39)	N32K	probably benign	Het
Ctrb1	G	A	8: 112,413,269 (GRCm39)	R248*	probably null	Het
Cyp2d11	T	A	15: 82,275,958 (GRCm39)	M208L	probably benign	Het
Dbt	A	G	3: 116,337,478 (GRCm39)	Q334R	probably benign	Het
Dcaf12	A	G	4: 41,298,338 (GRCm39)	V270A	probably damaging	Het
Dis3l	T	A	9: 64,226,447 (GRCm39)	N361I	probably benign	Het
Dnah10	A	T	5: 124,840,140 (GRCm39)	D1315V	probably benign	Het
Dnah11	A	G	12: 118,090,621 (GRCm39)	F1080S	probably benign	Het
Dnm3	A	G	1: 162,234,930 (GRCm39)	V70A	probably damaging	Het
Dpy19l1	A	C	9: 24,325,705 (GRCm39)	M700R	possibly damaging	Het
Dpy19l2	G	A	9: 24,557,679 (GRCm39)		probably benign	Het
Dst	C	A	1: 34,228,634 (GRCm39)	H2254N	possibly damaging	Het
Epm2aip1	A	G	9: 111,101,531 (GRCm39)	N168S	probably benign	Het
Fchsd2	A	G	7: 100,927,631 (GRCm39)	Y691C	possibly damaging	Het
Fndc8	A	T	11: 82,788,398 (GRCm39)	D76V	probably benign	Het
Frmd4a	T	C	2: 4,477,963 (GRCm39)	L48P	probably damaging	Het
Gimap6	T	A	6: 48,679,404 (GRCm39)	I211F	probably damaging	Het
Gm15130	A	G	2: 110,969,284 (GRCm39)		probably benign	Het
Gm43302	T	A	5: 105,438,766 (GRCm39)	I41F	probably damaging	Het
Gm5698	C	T	1: 31,016,614 (GRCm39)	V146I	probably benign	Het
Gpatch1	G	A	7: 34,986,652 (GRCm39)	S768L	probably damaging	Het
Grb14	T	G	2: 64,768,836 (GRCm39)		probably null	Het
Hnrnpd	T	C	5: 100,112,560 (GRCm39)	E222G	probably damaging	Het
Il4ra	C	T	7: 125,175,403 (GRCm39)	P537L	possibly damaging	Het
Kalrn	T	C	16: 34,024,327 (GRCm39)	D610G	probably damaging	Het
Kcnh4	T	C	11: 100,648,626 (GRCm39)	H26R	probably benign	Het
Kctd2	T	G	11: 115,320,343 (GRCm39)		probably benign	Het
Khdrbs3	T	A	15: 68,866,886 (GRCm39)		probably benign	Het
Macf1	G	A	4: 123,325,943 (GRCm39)	Q3066*	probably null	Het
Mfn2	G	A	4: 147,969,902 (GRCm39)		probably benign	Het
Mmab	T	C	5: 114,574,526 (GRCm39)		probably benign	Het
Mrc1	T	C	2: 14,266,011 (GRCm39)	S310P	probably benign	Het
Mrps21	T	C	3: 95,770,197 (GRCm39)	Y44C	probably null	Het
Myh10	T	A	11: 68,590,317 (GRCm39)	F121Y	probably damaging	Het
Myo1f	A	G	17: 33,820,677 (GRCm39)	D840G	probably damaging	Het
Neb	T	A	2: 52,196,542 (GRCm39)	D553V	probably damaging	Het
Nol6	G	T	4: 41,119,572 (GRCm39)		probably benign	Het
Npr2	G	T	4: 43,632,329 (GRCm39)	V49L	probably benign	Het
Ntsr2	T	C	12: 16,704,120 (GRCm39)	I207T	probably benign	Het
Nwd1	T	A	8: 73,438,484 (GRCm39)	S1552T	probably benign	Het
Oas3	T	A	5: 120,896,940 (GRCm39)	I894F	probably damaging	Het
Oprd1	A	G	4: 131,841,299 (GRCm39)	F220L	probably benign	Het
Or11j4	T	A	14: 50,630,659 (GRCm39)	F149I	probably benign	Het
Or2aj4	T	A	16: 19,384,799 (GRCm39)	Y278F	probably damaging	Het
Or2r2	A	T	6: 42,463,869 (GRCm39)	M86K	probably benign	Het
Or8b57	T	C	9: 40,003,983 (GRCm39)	N93S	possibly damaging	Het
Pkd1l3	G	T	8: 110,347,103 (GRCm39)	G159C	unknown	Het
Plcb4	T	C	2: 135,803,689 (GRCm39)	S521P	probably benign	Het
Plcl1	A	T	1: 55,752,634 (GRCm39)	I993F	probably damaging	Het
Plcxd1	T	A	5: 110,249,368 (GRCm39)	V65E	probably damaging	Het
Plekha7	T	C	7: 115,756,743 (GRCm39)	S640G	probably damaging	Het
Ptprn2	A	C	12: 117,240,222 (GRCm39)	N993T	probably benign	Het
Rabepk	T	C	2: 34,685,318 (GRCm39)	D26G	possibly damaging	Het
Reck	A	G	4: 43,930,936 (GRCm39)	N646D	probably damaging	Het
Rfx2	A	T	17: 57,093,736 (GRCm39)		probably benign	Het
Ripk2	G	A	4: 16,123,868 (GRCm39)	Q436*	probably null	Het
Ryr1	C	T	7: 28,704,992 (GRCm39)		probably benign	Het
Sema6b	A	G	17: 56,435,271 (GRCm39)	V324A	possibly damaging	Het
Sik2	C	A	9: 50,909,833 (GRCm39)	M73I	probably benign	Het
Slc39a6	T	C	18: 24,732,326 (GRCm39)	K321E	probably damaging	Het
Slc7a4	C	A	16: 17,391,875 (GRCm39)	V520F	probably benign	Het
Spink14	T	C	18: 44,161,830 (GRCm39)	V2A	probably benign	Het
Sptan1	C	A	2: 29,893,679 (GRCm39)		probably benign	Het
Stab1	C	T	14: 30,879,027 (GRCm39)		probably benign	Het
Tbc1d17	C	T	7: 44,493,495 (GRCm39)		probably benign	Het
Tbcd	T	A	11: 121,394,590 (GRCm39)	L49*	probably null	Het
Tmco6	A	G	18: 36,875,160 (GRCm39)	T477A	probably benign	Het
Tmem208	C	T	8: 106,054,857 (GRCm39)	A53V	probably benign	Het
Tpp2	A	G	1: 44,020,908 (GRCm39)	T837A	possibly damaging	Het
Tulp4	A	T	17: 6,252,008 (GRCm39)	N60I	probably damaging	Het
Ubqlnl	A	T	7: 103,798,145 (GRCm39)	W451R	probably damaging	Het
Usp53	G	T	3: 122,746,956 (GRCm39)	C363*	probably null	Het
Usp7	A	T	16: 8,509,282 (GRCm39)	H1017Q	probably benign	Het
Utp4	A	G	8: 107,649,530 (GRCm39)	T660A	possibly damaging	Het
Vmn1r194	A	T	13: 22,428,641 (GRCm39)	Y86F	probably benign	Het
Vmn1r195	A	T	13: 22,463,409 (GRCm39)	H293L	possibly damaging	Het
Vmn1r231	T	C	17: 21,109,998 (GRCm39)	R306G	probably benign	Het
Vmn2r63	T	C	7: 42,576,514 (GRCm39)		probably benign	Het
Vmn2r77	T	C	7: 86,449,964 (GRCm39)	V70A	probably benign	Het
Vmn2r85	T	C	10: 130,261,770 (GRCm39)	D189G	probably damaging	Het
Vps8	A	G	16: 21,296,273 (GRCm39)	E515G	possibly damaging	Het
Wdr18	C	A	10: 79,796,937 (GRCm39)	Y104*	probably null	Het
Wnk4	A	T	11: 101,156,261 (GRCm39)	D43V	probably damaging	Het
Xab2	A	T	8: 3,663,880 (GRCm39)	N346K	probably damaging	Het
Xirp2	T	C	2: 67,342,484 (GRCm39)	V1575A	possibly damaging	Het
Zdhhc12	C	T	2: 29,982,547 (GRCm39)	R50H	probably damaging	Het
Zdhhc8	A	G	16: 18,043,064 (GRCm39)	S379P	probably benign	Het
Zfp458	G	A	13: 67,407,673 (GRCm39)	Q58*	probably null	Het
Zfp747	A	T	7: 126,973,772 (GRCm39)	S133T	probably benign	Het

Other mutations in Slitrk6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00517:Slitrk6	APN	14	110,988,547 (GRCm39)	missense	probably benign	0.35
IGL01131:Slitrk6	APN	14	110,989,008 (GRCm39)	missense	probably damaging	1.00
IGL01294:Slitrk6	APN	14	110,987,506 (GRCm39)	missense	probably benign
IGL01295:Slitrk6	APN	14	110,988,868 (GRCm39)	missense	possibly damaging	0.50
IGL01762:Slitrk6	APN	14	110,989,056 (GRCm39)	missense	probably damaging	1.00
IGL02165:Slitrk6	APN	14	110,989,249 (GRCm39)	missense	probably benign	0.41
IGL02546:Slitrk6	APN	14	110,987,226 (GRCm39)	missense	probably benign	0.18
IGL03103:Slitrk6	APN	14	110,987,373 (GRCm39)	missense	probably benign
PIT1430001:Slitrk6	UTSW	14	110,987,859 (GRCm39)	missense	possibly damaging	0.93
PIT4480001:Slitrk6	UTSW	14	110,987,257 (GRCm39)	frame shift	probably null
R0035:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0067:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0069:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0107:Slitrk6	UTSW	14	110,989,395 (GRCm39)	missense	possibly damaging	0.69
R0157:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0422:Slitrk6	UTSW	14	110,989,725 (GRCm39)	start gained	probably benign
R0422:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0454:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0505:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0633:Slitrk6	UTSW	14	110,989,317 (GRCm39)	missense	probably damaging	1.00
R0711:Slitrk6	UTSW	14	110,987,251 (GRCm39)	missense	probably damaging	1.00
R0843:Slitrk6	UTSW	14	110,987,530 (GRCm39)	missense	probably benign
R1298:Slitrk6	UTSW	14	110,989,297 (GRCm39)	missense	possibly damaging	0.94
R1693:Slitrk6	UTSW	14	110,988,360 (GRCm39)	missense	probably damaging	1.00
R1756:Slitrk6	UTSW	14	110,987,984 (GRCm39)	missense	probably benign
R1998:Slitrk6	UTSW	14	110,989,255 (GRCm39)	missense	probably damaging	0.99
R2049:Slitrk6	UTSW	14	110,988,226 (GRCm39)	missense	probably benign	0.00
R2140:Slitrk6	UTSW	14	110,988,226 (GRCm39)	missense	probably benign	0.00
R2142:Slitrk6	UTSW	14	110,988,226 (GRCm39)	missense	probably benign	0.00
R2314:Slitrk6	UTSW	14	110,989,387 (GRCm39)	missense	probably damaging	1.00
R2566:Slitrk6	UTSW	14	110,987,704 (GRCm39)	missense	probably benign	0.00
R4231:Slitrk6	UTSW	14	110,988,820 (GRCm39)	missense	probably benign	0.02
R4236:Slitrk6	UTSW	14	110,987,580 (GRCm39)	missense	probably benign	0.07
R4247:Slitrk6	UTSW	14	110,988,171 (GRCm39)	missense	probably damaging	1.00
R4576:Slitrk6	UTSW	14	110,987,602 (GRCm39)	missense	probably benign	0.05
R4856:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4858:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4859:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4860:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4860:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4886:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4931:Slitrk6	UTSW	14	110,987,811 (GRCm39)	missense	probably damaging	1.00
R5255:Slitrk6	UTSW	14	110,987,185 (GRCm39)	makesense	probably null
R5281:Slitrk6	UTSW	14	110,987,805 (GRCm39)	missense	probably damaging	1.00
R5450:Slitrk6	UTSW	14	110,987,529 (GRCm39)	missense	probably benign
R5579:Slitrk6	UTSW	14	110,988,649 (GRCm39)	missense	possibly damaging	0.82
R5689:Slitrk6	UTSW	14	110,989,558 (GRCm39)	missense	probably benign
R5935:Slitrk6	UTSW	14	110,987,305 (GRCm39)	missense	probably benign	0.00
R6016:Slitrk6	UTSW	14	110,987,958 (GRCm39)	missense	probably benign	0.00
R6312:Slitrk6	UTSW	14	110,987,679 (GRCm39)	missense	probably benign	0.00
R6890:Slitrk6	UTSW	14	110,988,528 (GRCm39)	nonsense	probably null
R6952:Slitrk6	UTSW	14	110,987,974 (GRCm39)	missense	probably benign
R7378:Slitrk6	UTSW	14	110,987,295 (GRCm39)	missense	probably damaging	1.00
R8354:Slitrk6	UTSW	14	110,989,478 (GRCm39)	missense	probably damaging	1.00
R8401:Slitrk6	UTSW	14	110,989,453 (GRCm39)	missense	possibly damaging	0.67
R8454:Slitrk6	UTSW	14	110,989,478 (GRCm39)	missense	probably damaging	1.00
R8807:Slitrk6	UTSW	14	110,988,123 (GRCm39)	missense	possibly damaging	0.77
R8814:Slitrk6	UTSW	14	110,987,370 (GRCm39)	missense	probably benign
R8826:Slitrk6	UTSW	14	110,988,801 (GRCm39)	missense	probably benign
R9681:Slitrk6	UTSW	14	110,988,258 (GRCm39)	missense	probably damaging	1.00
R9740:Slitrk6	UTSW	14	110,987,444 (GRCm39)	missense	probably benign	0.13
R9740:Slitrk6	UTSW	14	110,987,430 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GAATCCCAGCATTTCTGCAAAAGCC -3'
(R):5'- TCTATGAACAACACATGGTGAGCCC -3'

Sequencing Primer
(F):5'- AAGCAGCCCCTCTATGTTTG -3'
(R):5'- AGCCCAATGGTTCATGTCTACAG -3'

Posted On

2013-05-23