Incidental Mutation 'IGL03160:Ccn6'
| ID |
411386 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Ccn6
|
| Ensembl Gene |
ENSMUSG00000062074 |
| Gene Name |
cellular communication network factor 6 |
| Synonyms |
LOC327743, CCN6, Wisp3 |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL03160
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
10 |
| Chromosomal Location |
39026966-39039790 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 39029233 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 232
(T232A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000076003
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000019991]
[ENSMUST00000076713]
[ENSMUST00000213459]
|
| AlphaFold |
D3Z5L9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000019991
|
| SMART Domains |
Protein: ENSMUSP00000019991
Gene: ENSMUSG00000019845
| Domain | Start | End | E-Value | Type |
|---|
|
Tubulin
|
55 |
277 |
1.08e-38 |
SMART |
|
Tubulin_C
|
279 |
414 |
9.81e-5 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000076713
AA Change: T232A
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000076003
Gene: ENSMUSG00000062074
AA Change: T232A
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
|
IB
|
46 |
116 |
1.01e-15 |
SMART |
|
Blast:VWC
|
122 |
179 |
1e-27 |
BLAST |
|
TSP1
|
211 |
253 |
6.58e-5 |
SMART |
|
CT
|
273 |
342 |
1.23e-10 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213459
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000213898
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000214493
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WNT1 inducible signaling pathway (WISP) protein subfamily, which belongs to the connective tissue growth factor (CTGF) family. WNT1 is a member of a family of cysteine-rich, glycosylated signaling proteins that mediate diverse developmental processes. The CTGF family members are characterized by four conserved cysteine-rich domains: insulin-like growth factor-binding domain, von Willebrand factor type C module, thrombospondin domain and C-terminal cystine knot-like domain. This gene is overexpressed in colon tumors. It may be downstream in the WNT1 signaling pathway that is relevant to malignant transformation. Mutations of this gene are associated with progressive pseudorheumatoid dysplasia, an autosomal recessive skeletal disorder, indicating that the gene is essential for normal postnatal skeletal growth and cartilage homeostasis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice are viable and fertile with no obvious abnormalities in size, weight, skeletal development, ossification, or the occurrence of joint disease. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actbl2 |
T |
C |
13: 111,392,462 (GRCm39) |
S266P |
probably benign |
Het |
| Agrn |
A |
T |
4: 156,254,820 (GRCm39) |
F1525Y |
probably damaging |
Het |
| Akap13 |
T |
C |
7: 75,380,165 (GRCm39) |
V2165A |
probably damaging |
Het |
| Cd109 |
G |
T |
9: 78,568,338 (GRCm39) |
|
probably null |
Het |
| Cdhr4 |
A |
C |
9: 107,873,068 (GRCm39) |
T339P |
probably benign |
Het |
| Chek1 |
T |
C |
9: 36,633,941 (GRCm39) |
H128R |
probably damaging |
Het |
| Clcn7 |
T |
A |
17: 25,365,427 (GRCm39) |
|
probably benign |
Het |
| Dnah9 |
A |
G |
11: 65,998,880 (GRCm39) |
F1056S |
probably damaging |
Het |
| Eml3 |
A |
T |
19: 8,912,319 (GRCm39) |
Q372L |
probably benign |
Het |
| Fam161b |
T |
C |
12: 84,400,599 (GRCm39) |
T458A |
probably benign |
Het |
| Fbxo3 |
T |
A |
2: 103,860,692 (GRCm39) |
C36* |
probably null |
Het |
| Gm28042 |
T |
A |
2: 119,866,309 (GRCm39) |
I369N |
possibly damaging |
Het |
| Gpc1 |
A |
G |
1: 92,785,579 (GRCm39) |
Y423C |
probably damaging |
Het |
| Heatr5a |
A |
G |
12: 51,931,279 (GRCm39) |
|
probably benign |
Het |
| Hectd4 |
A |
T |
5: 121,397,942 (GRCm39) |
Y290F |
probably benign |
Het |
| Ifi207 |
T |
C |
1: 173,562,670 (GRCm39) |
|
probably benign |
Het |
| Kndc1 |
A |
T |
7: 139,500,605 (GRCm39) |
K657* |
probably null |
Het |
| Lama5 |
T |
C |
2: 179,822,128 (GRCm39) |
T2927A |
probably damaging |
Het |
| Lepr |
A |
T |
4: 101,622,103 (GRCm39) |
N345I |
probably damaging |
Het |
| Mtbp |
T |
C |
15: 55,484,013 (GRCm39) |
|
probably benign |
Het |
| Muc1 |
G |
A |
3: 89,140,331 (GRCm39) |
V608I |
possibly damaging |
Het |
| Or56a3 |
A |
G |
7: 104,735,520 (GRCm39) |
N199S |
probably damaging |
Het |
| P2ry13 |
A |
G |
3: 59,117,496 (GRCm39) |
L94P |
probably damaging |
Het |
| Retreg3 |
G |
T |
11: 100,990,501 (GRCm39) |
Q89K |
probably benign |
Het |
| Rhoq |
A |
C |
17: 87,304,349 (GRCm39) |
Y160S |
probably damaging |
Het |
| Samd9l |
A |
T |
6: 3,374,894 (GRCm39) |
V789D |
probably damaging |
Het |
| Slc35f5 |
T |
C |
1: 125,502,472 (GRCm39) |
S275P |
probably damaging |
Het |
| Slc51a |
G |
A |
16: 32,297,568 (GRCm39) |
R110C |
probably damaging |
Het |
| Snapc1 |
T |
A |
12: 74,016,978 (GRCm39) |
H205Q |
probably damaging |
Het |
| Stard3 |
G |
T |
11: 98,269,737 (GRCm39) |
R352L |
probably damaging |
Het |
| Stat5a |
A |
G |
11: 100,752,671 (GRCm39) |
I85V |
possibly damaging |
Het |
| Tenm3 |
A |
T |
8: 49,099,453 (GRCm39) |
D117E |
probably benign |
Het |
| Tg |
T |
A |
15: 66,711,152 (GRCm39) |
C971* |
probably null |
Het |
| Tnrc6c |
T |
A |
11: 117,640,651 (GRCm39) |
|
probably benign |
Het |
| Tra2a |
C |
T |
6: 49,240,798 (GRCm39) |
V4I |
possibly damaging |
Het |
| Trim54 |
C |
T |
5: 31,289,424 (GRCm39) |
T145I |
probably damaging |
Het |
| Vmn2r75 |
T |
C |
7: 85,797,644 (GRCm39) |
D723G |
probably damaging |
Het |
| Wnk1 |
T |
C |
6: 119,903,594 (GRCm39) |
T2042A |
probably damaging |
Het |
| Zfp87 |
T |
C |
13: 67,669,392 (GRCm39) |
E18G |
probably damaging |
Het |
|
| Other mutations in Ccn6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01538:Ccn6
|
APN |
10 |
39,034,306 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02429:Ccn6
|
APN |
10 |
39,030,989 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02675:Ccn6
|
APN |
10 |
39,027,236 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
IGL03214:Ccn6
|
APN |
10 |
39,029,163 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0666:Ccn6
|
UTSW |
10 |
39,027,285 (GRCm39) |
missense |
probably benign |
0.45 |
|
R1350:Ccn6
|
UTSW |
10 |
39,034,302 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1478:Ccn6
|
UTSW |
10 |
39,029,239 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1479:Ccn6
|
UTSW |
10 |
39,029,239 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1624:Ccn6
|
UTSW |
10 |
39,029,239 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3833:Ccn6
|
UTSW |
10 |
39,030,945 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3975:Ccn6
|
UTSW |
10 |
39,031,094 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5051:Ccn6
|
UTSW |
10 |
39,031,152 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6000:Ccn6
|
UTSW |
10 |
39,034,296 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6492:Ccn6
|
UTSW |
10 |
39,030,983 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6775:Ccn6
|
UTSW |
10 |
39,027,351 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7053:Ccn6
|
UTSW |
10 |
39,034,297 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7138:Ccn6
|
UTSW |
10 |
39,034,473 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R7253:Ccn6
|
UTSW |
10 |
39,031,031 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7367:Ccn6
|
UTSW |
10 |
39,034,261 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7475:Ccn6
|
UTSW |
10 |
39,034,296 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8417:Ccn6
|
UTSW |
10 |
39,027,207 (GRCm39) |
nonsense |
probably null |
|
|
R8547:Ccn6
|
UTSW |
10 |
39,027,194 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9781:Ccn6
|
UTSW |
10 |
39,027,167 (GRCm39) |
makesense |
probably null |
|
|
| Posted On |
2016-08-02 |
Incidental Mutation