Incidental Mutation 'IGL03282:Vmn1r90'
ID 415615
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r90
Ensembl Gene ENSMUSG00000100586
Gene Name vomeronasal 1 receptor 90
Synonyms B430211C08Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.052) question?
Stock # IGL03282
Quality Score
Status
Chromosome 7
Chromosomal Location 14295167-14296096 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 14295426 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Leucine at position 224 (H224L)
Ref Sequence ENSEMBL: ENSMUSP00000153726 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000185220] [ENSMUST00000226264] [ENSMUST00000226510] [ENSMUST00000227566] [ENSMUST00000226802] [ENSMUST00000227692] [ENSMUST00000227855] [ENSMUST00000227788]
AlphaFold A0A087WR36
Predicted Effect noncoding transcript
Transcript: ENSMUST00000044683
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173220
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173766
Predicted Effect probably benign
Transcript: ENSMUST00000185220
AA Change: H224L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000140455
Gene: ENSMUSG00000100586
AA Change: H224L

DomainStartEndE-ValueType
Pfam:TAS2R 8 296 3.9e-9 PFAM
Pfam:V1R 41 295 2.7e-13 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226264
AA Change: H224L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000226510
AA Change: H142L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227566
AA Change: H217L

PolyPhen 2 Score 0.314 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000226802
AA Change: H224L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227692
AA Change: H224L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227855
AA Change: H224L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227788
AA Change: H224L

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226981
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 25 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Atl1 A G 12: 70,001,238 (GRCm39) I333M possibly damaging Het
Atxn2 A G 5: 121,923,298 (GRCm39) T52A probably benign Het
Atxn7 T A 14: 14,100,564 (GRCm38) L750H probably damaging Het
Cadps T C 14: 12,465,856 (GRCm38) probably benign Het
Cts6 T A 13: 61,344,261 (GRCm39) I264F possibly damaging Het
Dnah6 G T 6: 73,030,630 (GRCm39) probably benign Het
Epg5 A G 18: 78,029,641 (GRCm39) S1335G probably benign Het
Gm10073 A T 8: 107,299,972 (GRCm39) V4D probably benign Het
Gpld1 T A 13: 25,155,391 (GRCm39) M342K probably benign Het
Herc1 T A 9: 66,358,741 (GRCm39) F2607L probably benign Het
Ighv2-9-1 T C 12: 113,733,485 (GRCm39) Y112C probably damaging Het
Itga4 A T 2: 79,155,938 (GRCm39) H968L probably damaging Het
Me1 C T 9: 86,495,649 (GRCm39) R286Q probably damaging Het
Med1 G A 11: 98,047,643 (GRCm39) T1051M probably damaging Het
Msh2 T G 17: 87,996,430 (GRCm39) D379E probably benign Het
Mup4 T A 4: 59,958,547 (GRCm39) M118L possibly damaging Het
Ostm1 A T 10: 42,574,227 (GRCm39) S152C probably damaging Het
Pla2g1b A G 5: 115,608,939 (GRCm39) N45D probably damaging Het
Rab21 A G 10: 115,134,803 (GRCm39) probably benign Het
Rapgef4 G A 2: 72,036,096 (GRCm39) probably benign Het
Slc38a8 G T 8: 120,226,455 (GRCm39) N111K probably damaging Het
Snrnp35 A G 5: 124,628,372 (GRCm39) T62A probably damaging Het
Strn3 T C 12: 51,673,992 (GRCm39) I540V probably benign Het
Tgm1 A G 14: 55,948,527 (GRCm39) V208A probably damaging Het
Vmn1r62 A T 7: 5,678,547 (GRCm39) D76V possibly damaging Het
Other mutations in Vmn1r90
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02395:Vmn1r90 APN 7 14,295,822 (GRCm39) missense probably damaging 1.00
IGL03282:Vmn1r90 APN 7 14,296,093 (GRCm39) missense possibly damaging 0.92
IGL03365:Vmn1r90 APN 7 14,295,229 (GRCm39) missense probably damaging 0.99
R2519:Vmn1r90 UTSW 7 14,295,643 (GRCm39) missense probably damaging 1.00
R2996:Vmn1r90 UTSW 7 14,295,459 (GRCm39) missense probably damaging 1.00
R4086:Vmn1r90 UTSW 7 14,297,219 (GRCm39) splice site probably benign
R4303:Vmn1r90 UTSW 7 14,295,495 (GRCm39) nonsense probably null
R4508:Vmn1r90 UTSW 7 14,296,084 (GRCm39) missense probably benign 0.01
R4551:Vmn1r90 UTSW 7 14,295,894 (GRCm39) missense possibly damaging 0.88
R4672:Vmn1r90 UTSW 7 14,295,493 (GRCm39) missense probably benign 0.25
R4915:Vmn1r90 UTSW 7 14,295,950 (GRCm39) missense possibly damaging 0.82
R5227:Vmn1r90 UTSW 7 14,295,601 (GRCm39) missense possibly damaging 0.50
R5629:Vmn1r90 UTSW 7 14,296,011 (GRCm39) missense possibly damaging 0.48
R5888:Vmn1r90 UTSW 7 14,295,780 (GRCm39) missense probably damaging 1.00
R7532:Vmn1r90 UTSW 7 14,295,189 (GRCm39) missense possibly damaging 0.75
R7644:Vmn1r90 UTSW 7 14,295,616 (GRCm39) nonsense probably null
R9429:Vmn1r90 UTSW 7 14,295,647 (GRCm39) missense probably damaging 1.00
Posted On 2016-08-02