Incidental Mutation 'IGL03288:Cdh9'
ID415783
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Cdh9
Ensembl Gene ENSMUSG00000025370
Gene Namecadherin 9
SynonymsT1-cadherin
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.158) question?
Stock #IGL03288
Quality Score
Status
Chromosome15
Chromosomal Location16728756-16857094 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to T at 16856049 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Valine at position 725 (D725V)
Ref Sequence ENSEMBL: ENSMUSP00000154022 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026432] [ENSMUST00000228307]
Predicted Effect probably damaging
Transcript: ENSMUST00000026432
AA Change: D725V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000026432
Gene: ENSMUSG00000025370
AA Change: D725V

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
CA 75 156 2.84e-15 SMART
CA 180 265 5.63e-28 SMART
CA 289 381 1.12e-13 SMART
CA 404 485 8.03e-24 SMART
CA 508 595 1.34e-2 SMART
transmembrane domain 613 635 N/A INTRINSIC
Pfam:Cadherin_C 638 782 1.5e-54 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000228307
AA Change: D725V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type II classical cadherin from the cadherin superfamily, integral membrane proteins that mediate calcium-dependent cell-cell adhesion. Mature cadherin proteins are composed of a large N-terminal extracellular domain, a single membrane-spanning domain, and a small, highly conserved C-terminal cytoplasmic domain. The extracellular domain consists of 5 subdomains, each containing a cadherin motif, and appears to determine the specificity of the protein's homophilic cell adhesion activity. Type II (atypical) cadherins are defined based on their lack of a HAV cell adhesion recognition sequence specific to type I cadherins. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous knockout results in the formation of abnormal axonal arbors in some retinal type 5 bipolar cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arap2 T C 5: 62,604,616 K1589R probably benign Het
Armc3 T C 2: 19,235,482 F17L probably damaging Het
Ccdc17 T A 4: 116,599,429 L465H probably damaging Het
Chl1 C T 6: 103,675,097 R309C probably damaging Het
Col4a3bp T A 13: 96,634,192 D536E probably benign Het
Dbt T A 3: 116,548,198 *483K probably null Het
Ddx46 A G 13: 55,638,094 D29G unknown Het
Des T C 1: 75,362,341 I222T possibly damaging Het
Dnah8 A G 17: 30,672,349 N776S probably benign Het
Fbn1 A T 2: 125,303,183 L2712Q probably benign Het
Glb1l3 A C 9: 26,818,305 V622G probably damaging Het
Gm5415 T A 1: 32,545,760 E356D probably benign Het
Grin2a T C 16: 9,669,840 D398G possibly damaging Het
Itgb3 T C 11: 104,633,467 M143T probably damaging Het
Lama2 G A 10: 27,369,051 R245C probably damaging Het
Lgals9 G A 11: 78,984,800 A6V probably benign Het
Lman2l A T 1: 36,443,547 Y83N probably damaging Het
Lrp2 T A 2: 69,426,039 T4586S probably benign Het
Med10 T C 13: 69,815,697 probably benign Het
Myo18b A C 5: 112,789,997 L1754R probably damaging Het
Myom2 T C 8: 15,122,679 L1202S probably damaging Het
Nav3 T C 10: 109,759,017 E1441G probably damaging Het
Nme8 T C 13: 19,696,606 E60G possibly damaging Het
Npffr2 G T 5: 89,583,161 A317S probably damaging Het
Nrxn2 A G 19: 6,490,696 D893G probably damaging Het
Nup153 T C 13: 46,705,205 E410G possibly damaging Het
Olfr18 A G 9: 20,335,911 probably null Het
Olfr746 T C 14: 50,653,375 I46T possibly damaging Het
Pcdhb10 A G 18: 37,413,305 D478G probably damaging Het
Phf13 T C 4: 151,992,369 D122G possibly damaging Het
Pkhd1 A T 1: 20,201,019 H3103Q probably benign Het
Prr11 A C 11: 87,096,961 probably null Het
Rac3 C T 11: 120,723,266 T118M possibly damaging Het
Rad54b T C 4: 11,569,833 S50P possibly damaging Het
Rp1 T C 1: 4,349,524 Q455R possibly damaging Het
Sorl1 T C 9: 42,033,562 probably benign Het
Spink5 A T 18: 44,014,760 I858F possibly damaging Het
Stxbp5 A T 10: 9,866,703 probably null Het
Svep1 A C 4: 58,116,532 V906G probably benign Het
Tlr4 A G 4: 66,839,753 E261G probably damaging Het
Zfp704 C T 3: 9,439,891 probably benign Het
Zfyve9 A T 4: 108,723,799 probably benign Het
Other mutations in Cdh9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00429:Cdh9 APN 15 16828362 missense probably damaging 1.00
IGL00555:Cdh9 APN 15 16823406 missense probably damaging 1.00
IGL01110:Cdh9 APN 15 16855926 missense possibly damaging 0.63
IGL01432:Cdh9 APN 15 16830947 missense probably damaging 1.00
IGL01768:Cdh9 APN 15 16778225 missense possibly damaging 0.51
IGL02043:Cdh9 APN 15 16856232 missense probably damaging 1.00
IGL02304:Cdh9 APN 15 16848601 missense probably benign 0.01
IGL02380:Cdh9 APN 15 16856000 missense possibly damaging 0.79
IGL02505:Cdh9 APN 15 16855989 missense probably damaging 1.00
IGL02675:Cdh9 APN 15 16849076 splice site probably null
IGL02679:Cdh9 APN 15 16832230 missense probably damaging 0.97
R0426:Cdh9 UTSW 15 16823454 critical splice donor site probably null
R0726:Cdh9 UTSW 15 16831044 missense probably benign 0.00
R1335:Cdh9 UTSW 15 16850792 missense probably benign 0.00
R1368:Cdh9 UTSW 15 16848482 splice site probably benign
R1766:Cdh9 UTSW 15 16778306 missense probably damaging 1.00
R1916:Cdh9 UTSW 15 16823275 missense probably benign 0.03
R2325:Cdh9 UTSW 15 16778200 missense probably benign
R2424:Cdh9 UTSW 15 16850354 missense probably damaging 1.00
R3104:Cdh9 UTSW 15 16855814 missense probably damaging 1.00
R3837:Cdh9 UTSW 15 16823438 nonsense probably null
R3839:Cdh9 UTSW 15 16823438 nonsense probably null
R4241:Cdh9 UTSW 15 16849079 critical splice acceptor site probably null
R4248:Cdh9 UTSW 15 16850388 missense probably benign 0.00
R4576:Cdh9 UTSW 15 16832239 missense possibly damaging 0.73
R4679:Cdh9 UTSW 15 16850959 missense probably benign
R4896:Cdh9 UTSW 15 16778156 missense probably benign 0.12
R4961:Cdh9 UTSW 15 16850828 missense probably benign
R5050:Cdh9 UTSW 15 16778147 missense probably benign 0.12
R5089:Cdh9 UTSW 15 16778276 missense probably damaging 1.00
R5268:Cdh9 UTSW 15 16851013 missense probably benign
R5567:Cdh9 UTSW 15 16855844 missense probably damaging 1.00
R5646:Cdh9 UTSW 15 16823285 missense probably damaging 1.00
R5894:Cdh9 UTSW 15 16832100 missense possibly damaging 0.47
R6440:Cdh9 UTSW 15 16823423 missense probably benign 0.01
R6441:Cdh9 UTSW 15 16823423 missense probably benign 0.01
R7225:Cdh9 UTSW 15 16856073 missense probably damaging 1.00
R7247:Cdh9 UTSW 15 16778255 missense probably damaging 1.00
X0062:Cdh9 UTSW 15 16848539 missense possibly damaging 0.81
Posted On2016-08-02