Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03290:Lrrc56'

415892

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lrrc56

Ensembl Gene

ENSMUSG00000038637

Gene Name

leucine rich repeat containing 56

Synonyms

5730427C23Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.056) question?

Stock #

IGL03290

Quality Score

Status

Chromosome

Chromosomal Location

140774070-140789968 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 140779685 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000147745 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047093] [ENSMUST00000070458] [ENSMUST00000084446] [ENSMUST00000144008] [ENSMUST00000209220]

AlphaFold

Q8K375

Predicted Effect

probably benign
Transcript: ENSMUST00000047093

SMART Domains

Protein: ENSMUSP00000048691
Gene: ENSMUSG00000038637

Domain	Start	End	E-Value	Type
low complexity region	59	71	N/A	INTRINSIC
Pfam:LRR_4	138	177	9.1e-8	PFAM
LRRcap	212	230	4.44e-1	SMART
low complexity region	294	310	N/A	INTRINSIC
low complexity region	390	404	N/A	INTRINSIC
low complexity region	449	458	N/A	INTRINSIC
low complexity region	474	496	N/A	INTRINSIC
low complexity region	523	536	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000070458

SMART Domains

Protein: ENSMUSP00000063912
Gene: ENSMUSG00000038637

Domain	Start	End	E-Value	Type
low complexity region	59	71	N/A	INTRINSIC
Pfam:LRR_7	116	132	4e-2	PFAM
Pfam:LRR_8	116	171	8.7e-8	PFAM
Pfam:LRR_4	117	158	7.2e-11	PFAM
Pfam:LRR_1	139	159	2.9e-2	PFAM
LRRcap	212	230	4.44e-1	SMART
low complexity region	294	310	N/A	INTRINSIC
low complexity region	390	404	N/A	INTRINSIC
low complexity region	449	458	N/A	INTRINSIC
low complexity region	474	496	N/A	INTRINSIC
low complexity region	523	536	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000084446

SMART Domains

Protein: ENSMUSP00000081486
Gene: ENSMUSG00000038637

Domain	Start	End	E-Value	Type
low complexity region	59	71	N/A	INTRINSIC
Pfam:LRR_7	116	132	3.5e-2	PFAM
Pfam:LRR_8	116	171	6.9e-8	PFAM
Pfam:LRR_4	117	158	6.7e-11	PFAM
Pfam:LRR_6	136	160	5.9e-2	PFAM
Pfam:LRR_1	139	159	2.6e-2	PFAM
Pfam:LRR_6	157	182	4.1e-2	PFAM
Pfam:LRR_1	161	199	5.9e-2	PFAM
LRRcap	212	230	4.44e-1	SMART
low complexity region	294	310	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000144008

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144199

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150141

Predicted Effect

probably benign
Transcript: ENSMUST00000209220

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm4	A	G	7: 119,302,646 (GRCm39)		probably benign	Het
Asb18	A	G	1: 89,942,296 (GRCm39)	S2P	probably damaging	Het
Atp2b2	A	G	6: 113,770,715 (GRCm39)	F398S	probably damaging	Het
BC034090	T	G	1: 155,101,856 (GRCm39)	D136A	probably damaging	Het
Ces5a	A	C	8: 94,246,260 (GRCm39)	F310V	probably damaging	Het
Chsy1	T	C	7: 65,820,779 (GRCm39)	V338A	probably benign	Het
Dbh	A	G	2: 27,064,944 (GRCm39)	E385G	probably damaging	Het
Dnah14	T	A	1: 181,591,543 (GRCm39)		probably benign	Het
F2rl1	A	G	13: 95,650,097 (GRCm39)	S262P	possibly damaging	Het
Fat2	T	C	11: 55,147,045 (GRCm39)	N3984D	probably benign	Het
Fbxo38	A	T	18: 62,659,234 (GRCm39)	H354Q	probably benign	Het
Fgf6	T	A	6: 127,001,095 (GRCm39)	V201D	probably damaging	Het
Gm16181	A	T	17: 35,442,933 (GRCm39)		probably benign	Het
Gm6811	T	C	17: 21,314,311 (GRCm39)		noncoding transcript	Het
Gna11	A	G	10: 81,366,771 (GRCm39)	F313S	probably damaging	Het
Gprc6a	C	T	10: 51,491,968 (GRCm39)	A523T	probably damaging	Het
Il22	T	C	10: 118,041,785 (GRCm39)		probably null	Het
Insr	T	C	8: 3,308,574 (GRCm39)	Y154C	probably damaging	Het
Irak4	T	A	15: 94,449,780 (GRCm39)	D86E	probably benign	Het
Itk	C	A	11: 46,225,764 (GRCm39)	W529L	probably damaging	Het
Klhl6	C	A	16: 19,765,887 (GRCm39)	A572S	probably benign	Het
Ldhc	C	T	7: 46,519,112 (GRCm39)	R112C	probably damaging	Het
Mdh2	A	G	5: 135,818,567 (GRCm39)	E274G	probably damaging	Het
N4bp1	G	T	8: 87,575,161 (GRCm39)	D711E	probably benign	Het
Ngly1	T	A	14: 16,281,866 (GRCm38)	I248K	probably damaging	Het
Or2ab1	A	G	11: 58,489,149 (GRCm39)	N309S	probably damaging	Het
Or7e176	T	C	9: 20,171,556 (GRCm39)	I140T	probably damaging	Het
Pbrm1	A	G	14: 30,829,241 (GRCm39)	E1421G	probably damaging	Het
Pcca	G	A	14: 122,822,518 (GRCm39)	R112H	possibly damaging	Het
Pgrmc2	T	C	3: 41,023,061 (GRCm39)		probably benign	Het
Podnl1	G	A	8: 84,858,818 (GRCm39)	V548I	probably benign	Het
Pogz	A	T	3: 94,782,402 (GRCm39)		probably benign	Het
Ppp1r3a	A	G	6: 14,754,771 (GRCm39)	Y159H	probably damaging	Het
Rax	T	C	18: 66,071,231 (GRCm39)	K135E	probably damaging	Het
Rbm7	T	A	9: 48,401,267 (GRCm39)	M154L	probably benign	Het
Rp1	A	G	1: 4,420,264 (GRCm39)	S283P	probably damaging	Het
Rpusd4	T	C	9: 35,179,273 (GRCm39)	S30P	probably benign	Het
Samd13	T	C	3: 146,352,070 (GRCm39)	T75A	probably benign	Het
Sfxn4	A	G	19: 60,848,508 (GRCm39)	W22R	probably damaging	Het
Sh3pxd2a	T	A	19: 47,412,955 (GRCm39)	R43W	probably damaging	Het
Smc5	A	G	19: 23,251,022 (GRCm39)	V54A	probably benign	Het
Snap47	A	G	11: 59,319,424 (GRCm39)	I238T	probably damaging	Het
Tecpr2	T	G	12: 110,934,267 (GRCm39)	I1309S	possibly damaging	Het
Trappc8	A	G	18: 20,953,992 (GRCm39)	L1310P	probably damaging	Het
Vmn2r61	T	A	7: 41,915,408 (GRCm39)	H118Q	probably benign	Het
Zbtb17	C	T	4: 141,194,244 (GRCm39)	T731I	probably damaging	Het
Zfp287	A	G	11: 62,606,062 (GRCm39)	F282L	probably damaging	Het

Other mutations in Lrrc56

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02619:Lrrc56	APN	7	140,787,546 (GRCm39)	unclassified	probably benign
IGL02886:Lrrc56	APN	7	140,777,090 (GRCm39)	splice site	probably benign
IGL03348:Lrrc56	APN	7	140,787,153 (GRCm39)	missense	probably benign	0.01
R0624:Lrrc56	UTSW	7	140,786,366 (GRCm39)	missense	probably damaging	1.00
R1333:Lrrc56	UTSW	7	140,778,177 (GRCm39)	intron	probably benign
R1385:Lrrc56	UTSW	7	140,785,438 (GRCm39)	missense	probably damaging	1.00
R1857:Lrrc56	UTSW	7	140,787,421 (GRCm39)	missense	probably benign
R1858:Lrrc56	UTSW	7	140,787,421 (GRCm39)	missense	probably benign
R1859:Lrrc56	UTSW	7	140,787,421 (GRCm39)	missense	probably benign
R2234:Lrrc56	UTSW	7	140,778,207 (GRCm39)	missense	probably damaging	1.00
R2324:Lrrc56	UTSW	7	140,785,476 (GRCm39)	splice site	probably benign
R3807:Lrrc56	UTSW	7	140,789,298 (GRCm39)	missense	probably benign
R5347:Lrrc56	UTSW	7	140,789,537 (GRCm39)	missense	probably benign	0.00
R6194:Lrrc56	UTSW	7	140,785,564 (GRCm39)	missense	probably damaging	1.00
R7273:Lrrc56	UTSW	7	140,789,578 (GRCm39)	missense	probably benign
R7500:Lrrc56	UTSW	7	140,789,443 (GRCm39)	missense	probably benign
R7799:Lrrc56	UTSW	7	140,789,515 (GRCm39)	missense	probably damaging	1.00
R8097:Lrrc56	UTSW	7	140,775,819 (GRCm39)	critical splice acceptor site	probably null
R8725:Lrrc56	UTSW	7	140,778,246 (GRCm39)	missense	possibly damaging	0.87
R9803:Lrrc56	UTSW	7	140,787,520 (GRCm39)	missense	probably benign	0.01

Posted On

2016-08-02