Mutagenetix > Incidental Mutation

Incidental Mutation 'R0465:Gmnc'

41601

Institutional Source

Beutler Lab

Gene Symbol

Gmnc

Ensembl Gene

ENSMUSG00000068428

Gene Name

geminin coiled-coil domain containing

Synonyms

Gm606, LOC239789, LOC385639

MMRRC Submission

038665-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0465 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

26775985-26810424 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 26781702 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Threonine at position 109 (N109T)

Ref Sequence

ENSEMBL: ENSMUSP00000156070 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089832] [ENSMUST00000231299] [ENSMUST00000231417] [ENSMUST00000231969]

AlphaFold

Q3URY2

Predicted Effect

probably damaging
Transcript: ENSMUST00000089832
AA Change: N115T

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000087269
Gene: ENSMUSG00000068428
AA Change: N115T

Domain	Start	End	E-Value	Type
coiled coil region	89	124	N/A	INTRINSIC
low complexity region	148	161	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000231299
AA Change: N67T

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

Predicted Effect

probably damaging
Transcript: ENSMUST00000231417
AA Change: N60T

PolyPhen 2 Score 0.976 (Sensitivity: 0.76; Specificity: 0.96)

Predicted Effect

probably damaging
Transcript: ENSMUST00000231969
AA Change: N109T

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

Meta Mutation Damage Score

0.0780

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.5%
20x: 93.2%

Validation Efficiency

100% (71/71)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele die within the first postnatal week exhibiting severe postnatal growth retardation and absence of respiratory motile cilia in tracheal epithelial cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgre4	T	A	17: 56,092,137 (GRCm39)		probably benign	Het
Ankrd13a	T	A	5: 114,942,295 (GRCm39)	I526N	probably damaging	Het
Aox1	G	A	1: 58,101,366 (GRCm39)	V446I	probably damaging	Het
Arid1b	G	A	17: 5,046,535 (GRCm39)	G441D	possibly damaging	Het
Bdkrb2	A	T	12: 105,558,118 (GRCm39)	N120Y	possibly damaging	Het
Bud31	G	A	5: 145,083,396 (GRCm39)	V80I	probably damaging	Het
Camkmt	T	A	17: 85,738,950 (GRCm39)	F225L	probably damaging	Het
Carf	T	C	1: 60,171,142 (GRCm39)	M200T	probably damaging	Het
Carmil3	T	C	14: 55,737,318 (GRCm39)	L767P	probably damaging	Het
Cdk14	T	A	5: 5,143,019 (GRCm39)	R237S	probably damaging	Het
Cdx2	C	A	5: 147,243,283 (GRCm39)	K170N	possibly damaging	Het
Cfap65	G	A	1: 74,956,043 (GRCm39)	R1093C	possibly damaging	Het
Cnot8	T	A	11: 58,004,886 (GRCm39)	V195E	probably damaging	Het
Copa	T	C	1: 171,945,872 (GRCm39)	F936S	probably damaging	Het
Cstdc1	A	G	2: 148,625,345 (GRCm39)	N93S	probably benign	Het
Dnai1	T	A	4: 41,629,988 (GRCm39)		probably null	Het
Dsel	T	C	1: 111,789,992 (GRCm39)	N181S	probably benign	Het
Enpp7	A	G	11: 118,879,607 (GRCm39)	N87S	probably damaging	Het
Fads1	C	T	19: 10,160,429 (GRCm39)	P5L	probably benign	Het
G3bp1	T	C	11: 55,389,452 (GRCm39)	F383L	probably damaging	Het
Gm12695	T	C	4: 96,673,312 (GRCm39)	Y29C	probably damaging	Het
Gm5592	T	A	7: 40,805,481 (GRCm39)		probably benign	Het
Gstcd	A	G	3: 132,688,905 (GRCm39)	I615T	probably benign	Het
Hal	A	C	10: 93,352,146 (GRCm39)	K646Q	probably benign	Het
Hbs1l	A	G	10: 21,227,940 (GRCm39)	I472V	probably null	Het
Ift27	A	T	15: 78,057,958 (GRCm39)		probably benign	Het
Iqub	A	T	6: 24,503,783 (GRCm39)	I163N	probably damaging	Het
Isg20l2	T	A	3: 87,838,987 (GRCm39)	V66E	probably benign	Het
Itgb4	T	C	11: 115,870,582 (GRCm39)	M137T	probably damaging	Het
Lca5	T	A	9: 83,277,920 (GRCm39)	K475*	probably null	Het
Lyve1	A	G	7: 110,452,034 (GRCm39)		probably null	Het
Map3k19	T	C	1: 127,766,264 (GRCm39)	D220G	probably damaging	Het
Mdn1	T	A	4: 32,699,204 (GRCm39)		probably benign	Het
Mmp15	T	C	8: 96,094,626 (GRCm39)	W167R	probably damaging	Het
Ms4a13	A	G	19: 11,149,957 (GRCm39)	C135R	probably benign	Het
Myh1	A	G	11: 67,101,243 (GRCm39)	H673R	possibly damaging	Het
Myrf	G	C	19: 10,195,526 (GRCm39)	T428S	probably benign	Het
Oas2	A	G	5: 120,873,120 (GRCm39)	I645T	probably damaging	Het
Or52s6	A	T	7: 103,092,042 (GRCm39)	F96Y	possibly damaging	Het
Pard3b	T	G	1: 62,250,877 (GRCm39)		probably benign	Het
Patj	T	A	4: 98,423,744 (GRCm39)		probably null	Het
Pcare	A	G	17: 72,057,155 (GRCm39)	C841R	probably benign	Het
Pkd1l3	C	G	8: 110,350,281 (GRCm39)	D375E	possibly damaging	Het
Pkd1l3	G	A	8: 110,350,295 (GRCm39)	S380N	probably benign	Het
Rab34	C	A	11: 78,081,337 (GRCm39)	C67*	probably null	Het
Rimbp3	T	C	16: 17,029,644 (GRCm39)	S1023P	possibly damaging	Het
Rnf148	T	C	6: 23,654,684 (GRCm39)	N104S	probably benign	Het
Rpa1	T	C	11: 75,203,921 (GRCm39)	T288A	probably damaging	Het
Scn9a	A	G	2: 66,357,340 (GRCm39)	L976P	probably damaging	Het
Serpina12	T	A	12: 104,004,104 (GRCm39)	D176V	probably benign	Het
Sik1	C	T	17: 32,073,996 (GRCm39)	V10I	possibly damaging	Het
Sntb1	C	A	15: 55,612,672 (GRCm39)	R302L	probably benign	Het
Stambp	A	G	6: 83,547,321 (GRCm39)	I56T	probably benign	Het
Tac2	A	G	10: 127,565,039 (GRCm39)		probably benign	Het
Tecta	A	T	9: 42,270,714 (GRCm39)	I1198K	possibly damaging	Het
Tfip11	C	T	5: 112,481,130 (GRCm39)	R369C	probably benign	Het
Tnpo1	A	G	13: 99,021,142 (GRCm39)	I79T	probably damaging	Het
Ttll5	A	T	12: 85,980,100 (GRCm39)	N895Y	probably benign	Het
Ube2u	T	A	4: 100,389,293 (GRCm39)		probably benign	Het
Ubxn4	G	A	1: 128,190,641 (GRCm39)	E256K	probably benign	Het
Vmn2r1	T	C	3: 63,989,180 (GRCm39)	S40P	possibly damaging	Het
Vmn2r100	G	A	17: 19,751,792 (GRCm39)	V612I	probably damaging	Het
Vmn2r59	G	T	7: 41,696,332 (GRCm39)	H137N	probably benign	Het
Vsig10l	T	C	7: 43,116,866 (GRCm39)	V467A	probably damaging	Het
Vwde	A	G	6: 13,215,805 (GRCm39)		probably benign	Het
Xrra1	T	A	7: 99,528,578 (GRCm39)	D139E	probably benign	Het
Zc3h15	T	C	2: 83,494,159 (GRCm39)		probably benign	Het
Zfhx4	C	T	3: 5,310,716 (GRCm39)		probably benign	Het
Zscan18	A	G	7: 12,509,413 (GRCm39)		probably benign	Het

Other mutations in Gmnc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00757:Gmnc	APN	16	26,782,689 (GRCm39)	missense	probably damaging	0.99
IGL01612:Gmnc	APN	16	26,779,069 (GRCm39)	nonsense	probably null
IGL02600:Gmnc	APN	16	26,781,641 (GRCm39)	splice site	probably benign
R0925:Gmnc	UTSW	16	26,779,173 (GRCm39)	missense	probably benign	0.08
R1388:Gmnc	UTSW	16	26,782,662 (GRCm39)	missense	probably damaging	1.00
R1405:Gmnc	UTSW	16	26,779,196 (GRCm39)	missense	possibly damaging	0.86
R1405:Gmnc	UTSW	16	26,779,196 (GRCm39)	missense	possibly damaging	0.86
R1566:Gmnc	UTSW	16	26,782,689 (GRCm39)	missense	probably damaging	0.99
R1574:Gmnc	UTSW	16	26,782,729 (GRCm39)	splice site	probably benign
R1759:Gmnc	UTSW	16	26,784,497 (GRCm39)	missense	possibly damaging	0.82
R1880:Gmnc	UTSW	16	26,784,361 (GRCm39)	missense	probably damaging	1.00
R2151:Gmnc	UTSW	16	26,779,456 (GRCm39)	missense	possibly damaging	0.91
R3017:Gmnc	UTSW	16	26,779,165 (GRCm39)	missense	probably benign	0.00
R3437:Gmnc	UTSW	16	26,779,217 (GRCm39)	missense	probably benign	0.02
R5078:Gmnc	UTSW	16	26,784,332 (GRCm39)	missense	probably benign	0.13
R5225:Gmnc	UTSW	16	26,782,695 (GRCm39)	missense	probably benign	0.04
R5589:Gmnc	UTSW	16	26,781,714 (GRCm39)	missense	probably damaging	1.00
R6615:Gmnc	UTSW	16	26,779,278 (GRCm39)	missense	probably benign	0.14
R7078:Gmnc	UTSW	16	26,779,272 (GRCm39)	missense	probably benign
R7183:Gmnc	UTSW	16	26,779,279 (GRCm39)	missense	probably benign	0.08
R7284:Gmnc	UTSW	16	26,779,542 (GRCm39)	missense	probably benign	0.37
R8460:Gmnc	UTSW	16	26,779,204 (GRCm39)	missense	probably benign	0.08
R9149:Gmnc	UTSW	16	26,781,642 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- ATGAAGACGCCTTGTTCAAGCAAAC -3'
(R):5'- TGCAAGGAAAGAGTCCAGTCAAACC -3'

Sequencing Primer
(F):5'- CAAGCAAACTTCATGTTCTCAGTC -3'
(R):5'- CGAGGACTAGGGCTTTTTGAAAC -3'

Posted On

2013-05-23