Incidental Mutation 'IGL03090:Zyx'
ID |
418352 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Zyx
|
Ensembl Gene |
ENSMUSG00000029860 |
Gene Name |
zyxin |
Synonyms |
R75157 |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL03090
|
Quality Score |
|
Status
|
|
Chromosome |
6 |
Chromosomal Location |
42326564-42337147 bp(+) (GRCm39) |
Type of Mutation |
nonsense |
DNA Base Change (assembly) |
C to A
at 42334276 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Stop codon
at position 500
(S500*)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000145451
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000070635]
[ENSMUST00000073387]
[ENSMUST00000164375]
[ENSMUST00000203401]
[ENSMUST00000203652]
[ENSMUST00000204357]
|
AlphaFold |
Q62523 |
Predicted Effect |
probably null
Transcript: ENSMUST00000070635
AA Change: S469*
|
SMART Domains |
Protein: ENSMUSP00000070427 Gene: ENSMUSG00000029860 AA Change: S469*
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
18 |
N/A |
INTRINSIC |
low complexity region
|
21 |
36 |
N/A |
INTRINSIC |
low complexity region
|
61 |
84 |
N/A |
INTRINSIC |
low complexity region
|
92 |
131 |
N/A |
INTRINSIC |
low complexity region
|
144 |
158 |
N/A |
INTRINSIC |
low complexity region
|
174 |
186 |
N/A |
INTRINSIC |
low complexity region
|
199 |
220 |
N/A |
INTRINSIC |
low complexity region
|
250 |
266 |
N/A |
INTRINSIC |
low complexity region
|
269 |
283 |
N/A |
INTRINSIC |
low complexity region
|
323 |
333 |
N/A |
INTRINSIC |
low complexity region
|
343 |
363 |
N/A |
INTRINSIC |
LIM
|
375 |
428 |
2.4e-17 |
SMART |
LIM
|
435 |
487 |
7.39e-18 |
SMART |
LIM
|
495 |
557 |
9.31e-15 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000073387
|
SMART Domains |
Protein: ENSMUSP00000073099 Gene: ENSMUSG00000029859
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
EPH_lbd
|
28 |
205 |
3.23e-103 |
SMART |
FN3
|
334 |
430 |
8.43e-9 |
SMART |
FN3
|
448 |
526 |
1.59e-4 |
SMART |
Pfam:EphA2_TM
|
549 |
622 |
3.4e-13 |
PFAM |
TyrKc
|
625 |
881 |
2.57e-126 |
SMART |
SAM
|
911 |
977 |
4.13e-19 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000164375
AA Change: S500*
|
SMART Domains |
Protein: ENSMUSP00000126622 Gene: ENSMUSG00000029860 AA Change: S500*
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
18 |
N/A |
INTRINSIC |
low complexity region
|
21 |
36 |
N/A |
INTRINSIC |
low complexity region
|
61 |
84 |
N/A |
INTRINSIC |
low complexity region
|
92 |
131 |
N/A |
INTRINSIC |
low complexity region
|
144 |
158 |
N/A |
INTRINSIC |
low complexity region
|
174 |
186 |
N/A |
INTRINSIC |
low complexity region
|
199 |
220 |
N/A |
INTRINSIC |
low complexity region
|
250 |
266 |
N/A |
INTRINSIC |
low complexity region
|
269 |
283 |
N/A |
INTRINSIC |
low complexity region
|
323 |
333 |
N/A |
INTRINSIC |
low complexity region
|
343 |
363 |
N/A |
INTRINSIC |
LIM
|
375 |
428 |
2.4e-17 |
SMART |
LIM
|
435 |
487 |
7.39e-18 |
SMART |
LIM
|
495 |
557 |
9.31e-15 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000203290
|
Predicted Effect |
probably null
Transcript: ENSMUST00000203401
AA Change: S469*
|
SMART Domains |
Protein: ENSMUSP00000145236 Gene: ENSMUSG00000029860 AA Change: S469*
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
18 |
N/A |
INTRINSIC |
low complexity region
|
21 |
36 |
N/A |
INTRINSIC |
low complexity region
|
61 |
84 |
N/A |
INTRINSIC |
low complexity region
|
92 |
131 |
N/A |
INTRINSIC |
low complexity region
|
143 |
155 |
N/A |
INTRINSIC |
low complexity region
|
168 |
189 |
N/A |
INTRINSIC |
low complexity region
|
219 |
235 |
N/A |
INTRINSIC |
low complexity region
|
238 |
252 |
N/A |
INTRINSIC |
low complexity region
|
292 |
302 |
N/A |
INTRINSIC |
low complexity region
|
312 |
332 |
N/A |
INTRINSIC |
LIM
|
344 |
397 |
2.4e-17 |
SMART |
LIM
|
404 |
456 |
7.39e-18 |
SMART |
LIM
|
464 |
526 |
9.31e-15 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000203652
AA Change: S500*
|
SMART Domains |
Protein: ENSMUSP00000145451 Gene: ENSMUSG00000029860 AA Change: S500*
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
18 |
N/A |
INTRINSIC |
low complexity region
|
21 |
36 |
N/A |
INTRINSIC |
low complexity region
|
61 |
84 |
N/A |
INTRINSIC |
low complexity region
|
92 |
131 |
N/A |
INTRINSIC |
low complexity region
|
144 |
158 |
N/A |
INTRINSIC |
low complexity region
|
174 |
186 |
N/A |
INTRINSIC |
low complexity region
|
199 |
220 |
N/A |
INTRINSIC |
low complexity region
|
250 |
266 |
N/A |
INTRINSIC |
low complexity region
|
269 |
283 |
N/A |
INTRINSIC |
low complexity region
|
323 |
333 |
N/A |
INTRINSIC |
low complexity region
|
343 |
363 |
N/A |
INTRINSIC |
LIM
|
375 |
428 |
2.4e-17 |
SMART |
LIM
|
435 |
487 |
7.39e-18 |
SMART |
LIM
|
495 |
557 |
9.31e-15 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000204270
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000204480
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000204357
|
SMART Domains |
Protein: ENSMUSP00000144763 Gene: ENSMUSG00000029859
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
EPH_lbd
|
28 |
205 |
1.1e-105 |
SMART |
FN3
|
334 |
430 |
4.2e-11 |
SMART |
low complexity region
|
459 |
473 |
N/A |
INTRINSIC |
FN3
|
483 |
563 |
2.4e-8 |
SMART |
Pfam:EphA2_TM
|
586 |
659 |
7.6e-11 |
PFAM |
STYKc
|
662 |
849 |
1.1e-65 |
SMART |
SAM
|
879 |
945 |
2.5e-21 |
SMART |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Focal adhesions are actin-rich structures that enable cells to adhere to the extracellular matrix and at which protein complexes involved in signal transduction assemble. Zyxin is a zinc-binding phosphoprotein that concentrates at focal adhesions and along the actin cytoskeleton. Zyxin has an N-terminal proline-rich domain and three LIM domains in its C-terminal half. The proline-rich domain may interact with SH3 domains of proteins involved in signal transduction pathways while the LIM domains are likely involved in protein-protein binding. Zyxin may function as a messenger in the signal transduction pathway that mediates adhesion-stimulated changes in gene expression and may modulate the cytoskeletal organization of actin bundles. Alternative splicing results in multiple transcript variants that encode the same isoform. [provided by RefSeq, Jul 2008] PHENOTYPE: Mice lacking functional copies of this gene are viable, fertile, and develop normally. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 49 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adam20 |
A |
G |
8: 41,247,965 (GRCm39) |
Y25C |
probably benign |
Het |
Agap3 |
A |
C |
5: 24,706,204 (GRCm39) |
T823P |
possibly damaging |
Het |
Arap3 |
T |
C |
18: 38,122,165 (GRCm39) |
E641G |
probably benign |
Het |
Armc6 |
C |
T |
8: 70,684,004 (GRCm39) |
R16Q |
probably benign |
Het |
Asb15 |
T |
A |
6: 24,567,185 (GRCm39) |
I502K |
possibly damaging |
Het |
Atp8b3 |
T |
A |
10: 80,366,438 (GRCm39) |
N275I |
probably damaging |
Het |
Calr |
G |
A |
8: 85,573,373 (GRCm39) |
P19S |
possibly damaging |
Het |
Cdc6 |
T |
A |
11: 98,810,122 (GRCm39) |
L477* |
probably null |
Het |
Clba1 |
T |
C |
12: 112,779,340 (GRCm39) |
|
probably null |
Het |
Cnnm4 |
A |
G |
1: 36,510,952 (GRCm39) |
D60G |
probably benign |
Het |
Col12a1 |
G |
T |
9: 79,585,652 (GRCm39) |
Q1242K |
probably damaging |
Het |
Dusp18 |
T |
A |
11: 3,847,466 (GRCm39) |
I152N |
probably damaging |
Het |
Eef1akmt1 |
T |
C |
14: 57,795,543 (GRCm39) |
T69A |
probably damaging |
Het |
Efhb |
T |
C |
17: 53,769,958 (GRCm39) |
Q117R |
probably benign |
Het |
Fancd2 |
T |
A |
6: 113,514,558 (GRCm39) |
|
probably null |
Het |
Fat3 |
C |
T |
9: 16,288,535 (GRCm39) |
W329* |
probably null |
Het |
Frem3 |
A |
G |
8: 81,344,858 (GRCm39) |
Y1727C |
probably benign |
Het |
Fut2 |
C |
T |
7: 45,300,193 (GRCm39) |
G193E |
possibly damaging |
Het |
Gatb |
C |
A |
3: 85,526,330 (GRCm39) |
|
probably benign |
Het |
Gpr33 |
A |
T |
12: 52,070,809 (GRCm39) |
S77T |
probably damaging |
Het |
Gramd1c |
A |
T |
16: 43,802,463 (GRCm39) |
D649E |
probably benign |
Het |
Herc2 |
T |
A |
7: 55,854,221 (GRCm39) |
L3745H |
probably damaging |
Het |
Klk1b11 |
T |
A |
7: 43,426,977 (GRCm39) |
M87K |
probably benign |
Het |
Krt39 |
T |
G |
11: 99,409,833 (GRCm39) |
|
probably benign |
Het |
Lamc3 |
T |
A |
2: 31,798,710 (GRCm39) |
|
probably benign |
Het |
Lars2 |
T |
G |
9: 123,285,025 (GRCm39) |
M786R |
probably damaging |
Het |
Lmcd1 |
T |
A |
6: 112,287,460 (GRCm39) |
S49T |
probably benign |
Het |
Lrba |
T |
C |
3: 86,680,448 (GRCm39) |
Y2689H |
probably benign |
Het |
Map3k6 |
T |
C |
4: 132,970,677 (GRCm39) |
V188A |
probably benign |
Het |
Mbd6 |
A |
C |
10: 127,123,013 (GRCm39) |
L49W |
probably damaging |
Het |
Myo5a |
A |
T |
9: 75,028,115 (GRCm39) |
Y100F |
probably damaging |
Het |
Myo9a |
T |
A |
9: 59,801,418 (GRCm39) |
|
probably benign |
Het |
Ncoa7 |
T |
C |
10: 30,538,396 (GRCm39) |
D663G |
probably damaging |
Het |
Nup214 |
A |
T |
2: 31,908,254 (GRCm39) |
M1075L |
probably benign |
Het |
Pkd1l3 |
C |
A |
8: 110,382,165 (GRCm39) |
Y240* |
probably null |
Het |
Pomk |
T |
A |
8: 26,473,338 (GRCm39) |
N205I |
probably damaging |
Het |
Sdr16c5 |
A |
G |
4: 4,006,575 (GRCm39) |
|
probably benign |
Het |
Setd1a |
A |
G |
7: 127,385,672 (GRCm39) |
E250G |
possibly damaging |
Het |
Slc26a6 |
A |
G |
9: 108,737,890 (GRCm39) |
E541G |
probably benign |
Het |
Slc4a3 |
A |
G |
1: 75,531,661 (GRCm39) |
E876G |
probably benign |
Het |
Srrm4 |
A |
G |
5: 116,587,643 (GRCm39) |
|
probably benign |
Het |
Stx12 |
A |
G |
4: 132,590,540 (GRCm39) |
V119A |
probably benign |
Het |
Tmem8b |
T |
A |
4: 43,689,721 (GRCm39) |
S333T |
probably damaging |
Het |
Usp31 |
T |
C |
7: 121,278,753 (GRCm39) |
|
probably benign |
Het |
Utp18 |
T |
C |
11: 93,759,245 (GRCm39) |
R410G |
probably damaging |
Het |
Vmn1r172 |
T |
C |
7: 23,359,463 (GRCm39) |
I116T |
probably damaging |
Het |
Vwa8 |
T |
A |
14: 79,172,041 (GRCm39) |
L274Q |
possibly damaging |
Het |
Wdfy3 |
A |
T |
5: 102,014,142 (GRCm39) |
F2655I |
probably damaging |
Het |
Zfp423 |
A |
T |
8: 88,508,071 (GRCm39) |
Y737N |
probably damaging |
Het |
|
Other mutations in Zyx |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01360:Zyx
|
APN |
6 |
42,327,378 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02418:Zyx
|
APN |
6 |
42,334,327 (GRCm39) |
missense |
probably damaging |
1.00 |
R0282:Zyx
|
UTSW |
6 |
42,332,939 (GRCm39) |
missense |
probably damaging |
1.00 |
R0449:Zyx
|
UTSW |
6 |
42,328,247 (GRCm39) |
missense |
probably damaging |
1.00 |
R1496:Zyx
|
UTSW |
6 |
42,333,246 (GRCm39) |
missense |
probably damaging |
1.00 |
R1666:Zyx
|
UTSW |
6 |
42,332,966 (GRCm39) |
missense |
possibly damaging |
0.48 |
R1668:Zyx
|
UTSW |
6 |
42,332,966 (GRCm39) |
missense |
possibly damaging |
0.48 |
R1956:Zyx
|
UTSW |
6 |
42,328,289 (GRCm39) |
missense |
probably damaging |
1.00 |
R4272:Zyx
|
UTSW |
6 |
42,327,880 (GRCm39) |
missense |
probably damaging |
1.00 |
R4766:Zyx
|
UTSW |
6 |
42,333,093 (GRCm39) |
splice site |
probably null |
|
R4817:Zyx
|
UTSW |
6 |
42,333,421 (GRCm39) |
missense |
probably damaging |
1.00 |
R5216:Zyx
|
UTSW |
6 |
42,333,466 (GRCm39) |
missense |
probably damaging |
0.96 |
R6981:Zyx
|
UTSW |
6 |
42,327,291 (GRCm39) |
missense |
unknown |
|
R7331:Zyx
|
UTSW |
6 |
42,328,593 (GRCm39) |
missense |
probably benign |
0.03 |
R7553:Zyx
|
UTSW |
6 |
42,327,408 (GRCm39) |
missense |
probably null |
0.99 |
R7665:Zyx
|
UTSW |
6 |
42,333,096 (GRCm39) |
missense |
probably damaging |
0.99 |
R7962:Zyx
|
UTSW |
6 |
42,333,505 (GRCm39) |
missense |
probably damaging |
1.00 |
R8410:Zyx
|
UTSW |
6 |
42,333,384 (GRCm39) |
missense |
probably benign |
0.39 |
R9181:Zyx
|
UTSW |
6 |
42,334,818 (GRCm39) |
missense |
probably damaging |
1.00 |
RF020:Zyx
|
UTSW |
6 |
42,334,330 (GRCm39) |
missense |
probably damaging |
1.00 |
X0022:Zyx
|
UTSW |
6 |
42,332,960 (GRCm39) |
missense |
probably benign |
0.01 |
X0028:Zyx
|
UTSW |
6 |
42,328,012 (GRCm39) |
missense |
probably damaging |
0.99 |
X0064:Zyx
|
UTSW |
6 |
42,334,249 (GRCm39) |
missense |
probably benign |
0.08 |
Z1176:Zyx
|
UTSW |
6 |
42,333,442 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2016-08-02 |