Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03106:Traf3ip1'

418962

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Traf3ip1

Ensembl Gene

ENSMUSG00000034292

Gene Name

TRAF3 interacting protein 1

Synonyms

MIP-T3, 3930402D05Rik

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL03106

Quality Score

Status

Chromosome

Chromosomal Location

91422369-91457029 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 91450609 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 519 (S519P)

Ref Sequence

ENSEMBL: ENSMUSP00000140151 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047242] [ENSMUST00000189341]

AlphaFold

Q149C2

Predicted Effect

probably benign
Transcript: ENSMUST00000047242
AA Change: S490P

PolyPhen 2 Score 0.263 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000042391
Gene: ENSMUSG00000034292
AA Change: S490P

Domain	Start	End	E-Value	Type
Pfam:MIP-T3	49	619	7e-207	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187588

Predicted Effect

probably benign
Transcript: ENSMUST00000189341
AA Change: S519P

PolyPhen 2 Score 0.263 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000140151
Gene: ENSMUSG00000034292
AA Change: S519P

Domain	Start	End	E-Value	Type
Pfam:MIP-T3	49	648	7.1e-203	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trap allele exhibit embryonic lethality, cardiac edema, abnormal neural development, polydactyly, and microphthalmia associated with a lack of embryonic lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam3	G	T	8: 25,205,135 (GRCm39)		probably benign	Het
Adgrv1	T	C	13: 81,621,018 (GRCm39)	N3911S	probably benign	Het
Alox12b	C	T	11: 69,059,702 (GRCm39)	Q585*	probably null	Het
Amtn	A	G	5: 88,525,944 (GRCm39)	Q36R	probably benign	Het
Arg2	G	A	12: 79,196,665 (GRCm39)	G129S	probably damaging	Het
Arhgef28	A	C	13: 98,094,301 (GRCm39)	Y948D	probably damaging	Het
Atp10b	T	C	11: 43,138,304 (GRCm39)	V1195A	probably benign	Het
Bet1l	G	T	7: 140,434,523 (GRCm39)	T42K	probably benign	Het
Cabin1	G	A	10: 75,569,462 (GRCm39)	T875I	probably benign	Het
Ccdc17	A	G	4: 116,454,033 (GRCm39)		probably null	Het
Crebrf	A	G	17: 26,990,293 (GRCm39)	E612G	probably damaging	Het
Cyp2c67	A	T	19: 39,632,119 (GRCm39)	M83K	probably benign	Het
Dgkz	A	G	2: 91,771,204 (GRCm39)	S414P	probably damaging	Het
Dock10	G	T	1: 80,546,551 (GRCm39)	H411N	probably damaging	Het
Dpyd	A	T	3: 118,988,783 (GRCm39)	T749S	probably benign	Het
Dsc1	C	T	18: 20,219,701 (GRCm39)		probably null	Het
Echdc1	A	T	10: 29,198,276 (GRCm39)	M74L	probably damaging	Het
Edn1	C	A	13: 42,458,499 (GRCm39)	T104K	possibly damaging	Het
Fat2	T	A	11: 55,202,727 (GRCm39)	T116S	probably benign	Het
Fcrl5	A	T	3: 87,343,190 (GRCm39)		probably null	Het
Fpgt	C	T	3: 154,792,759 (GRCm39)	G423R	probably damaging	Het
Gprc5b	A	T	7: 118,583,416 (GRCm39)	V151E	probably damaging	Het
Grm5	A	G	7: 87,685,278 (GRCm39)	Y465C	probably damaging	Het
Idh3b	T	A	2: 130,126,321 (GRCm39)	N6I	probably benign	Het
Ighmbp2	T	C	19: 3,323,022 (GRCm39)	K308R	possibly damaging	Het
Lrch1	A	T	14: 75,073,202 (GRCm39)	S146T	possibly damaging	Het
Lyl1	C	T	8: 85,429,300 (GRCm39)	P3L	possibly damaging	Het
Mterf3	T	C	13: 67,078,221 (GRCm39)	K16R	probably damaging	Het
Ncapg	T	A	5: 45,853,010 (GRCm39)	H825Q	probably damaging	Het
Or2t1	G	A	14: 14,328,851 (GRCm38)	V247I	probably damaging	Het
Or2y1f	T	A	11: 49,184,988 (GRCm39)	I280N	probably damaging	Het
Or4d5	A	G	9: 40,012,030 (GRCm39)	V252A	probably damaging	Het
Or5b95	G	A	19: 12,658,287 (GRCm39)	V272M	possibly damaging	Het
Or5t15	A	C	2: 86,681,958 (GRCm39)	L28R	possibly damaging	Het
Or5w15	A	T	2: 87,568,462 (GRCm39)	S69T	probably benign	Het
Pald1	A	T	10: 61,182,884 (GRCm39)	M355K	probably benign	Het
Phc1	A	G	6: 122,300,428 (GRCm39)		probably benign	Het
Phkb	T	A	8: 86,745,095 (GRCm39)		probably benign	Het
Pkn3	G	T	2: 29,975,257 (GRCm39)	R506L	probably damaging	Het
Plod2	T	C	9: 92,455,620 (GRCm39)	Y100H	probably damaging	Het
Prl7b1	G	T	13: 27,790,918 (GRCm39)	Q56K	probably benign	Het
Rhot1	T	A	11: 80,133,407 (GRCm39)	C229*	probably null	Het
Sema3a	G	A	5: 13,649,456 (GRCm39)	R735Q	probably damaging	Het
Slc18b1	A	G	10: 23,702,557 (GRCm39)	*460W	probably null	Het
Slco6c1	T	A	1: 96,993,748 (GRCm39)		probably benign	Het
Slu7	T	A	11: 43,333,457 (GRCm39)	V359D	possibly damaging	Het
Suco	T	C	1: 161,662,049 (GRCm39)	Y794C	possibly damaging	Het
Sult3a2	T	C	10: 33,655,769 (GRCm39)	N70S	probably benign	Het
Taar2	A	T	10: 23,817,195 (GRCm39)	D245V	probably damaging	Het
Taf1d	A	G	9: 15,221,237 (GRCm39)	H181R	possibly damaging	Het
Tmem33	T	C	5: 67,421,139 (GRCm39)	S38P	probably damaging	Het
Ttc12	T	C	9: 49,369,362 (GRCm39)	K253E	possibly damaging	Het

Other mutations in Traf3ip1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01355:Traf3ip1	APN	1	91,446,019 (GRCm39)	missense	probably damaging	0.98
IGL01997:Traf3ip1	APN	1	91,435,292 (GRCm39)	critical splice donor site	probably null
IGL02431:Traf3ip1	APN	1	91,427,357 (GRCm39)	missense	unknown
eclectic	UTSW	1	91,435,458 (GRCm39)	splice site	probably null
R0538:Traf3ip1	UTSW	1	91,427,341 (GRCm39)	missense	unknown
R1034:Traf3ip1	UTSW	1	91,446,041 (GRCm39)	splice site	probably null
R1065:Traf3ip1	UTSW	1	91,428,506 (GRCm39)	missense	unknown
R1757:Traf3ip1	UTSW	1	91,450,579 (GRCm39)	missense	probably damaging	1.00
R2360:Traf3ip1	UTSW	1	91,427,374 (GRCm39)	missense	unknown
R2367:Traf3ip1	UTSW	1	91,435,242 (GRCm39)	missense	possibly damaging	0.90
R3031:Traf3ip1	UTSW	1	91,447,822 (GRCm39)	missense	probably damaging	1.00
R3752:Traf3ip1	UTSW	1	91,446,019 (GRCm39)	missense	probably damaging	0.98
R3752:Traf3ip1	UTSW	1	91,428,639 (GRCm39)	splice site	probably benign
R4690:Traf3ip1	UTSW	1	91,447,834 (GRCm39)	missense	possibly damaging	0.90
R4747:Traf3ip1	UTSW	1	91,455,479 (GRCm39)	missense	probably damaging	1.00
R5328:Traf3ip1	UTSW	1	91,447,791 (GRCm39)	missense	probably damaging	1.00
R5540:Traf3ip1	UTSW	1	91,429,037 (GRCm39)	missense	probably benign	0.07
R5910:Traf3ip1	UTSW	1	91,455,467 (GRCm39)	missense	probably damaging	1.00
R6593:Traf3ip1	UTSW	1	91,455,417 (GRCm39)	missense	possibly damaging	0.82
R6836:Traf3ip1	UTSW	1	91,448,722 (GRCm39)	missense	probably benign	0.17
R7249:Traf3ip1	UTSW	1	91,455,361 (GRCm39)	missense	probably damaging	1.00
R7418:Traf3ip1	UTSW	1	91,435,458 (GRCm39)	splice site	probably null
R7436:Traf3ip1	UTSW	1	91,439,110 (GRCm39)	missense	probably benign	0.02
R7597:Traf3ip1	UTSW	1	91,439,167 (GRCm39)	missense	probably damaging	0.97
R7751:Traf3ip1	UTSW	1	91,422,479 (GRCm39)	start gained	probably benign
R8031:Traf3ip1	UTSW	1	91,429,141 (GRCm39)	missense	probably damaging	1.00
R8179:Traf3ip1	UTSW	1	91,428,523 (GRCm39)	missense	unknown
R8919:Traf3ip1	UTSW	1	91,443,796 (GRCm39)	intron	probably benign
R9002:Traf3ip1	UTSW	1	91,433,178 (GRCm39)	missense	probably benign	0.05
R9040:Traf3ip1	UTSW	1	91,429,092 (GRCm39)	missense	probably damaging	0.99
R9055:Traf3ip1	UTSW	1	91,428,733 (GRCm39)	nonsense	probably null
R9745:Traf3ip1	UTSW	1	91,439,095 (GRCm39)	nonsense	probably null

Posted On

2016-08-02