Incidental Mutation 'IGL03366:Ap2a2'
| ID |
420102 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Ap2a2
|
| Ensembl Gene |
ENSMUSG00000002957 |
| Gene Name |
adaptor-related protein complex 2, alpha 2 subunit |
| Synonyms |
Adtab, 2410074K14Rik, L25, alpha-C adaptin, alpha-adaptin C |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.476)
|
| Stock # |
IGL03366
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
7 |
| Chromosomal Location |
141142093-141212924 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 141209186 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Threonine
at position 793
(S793T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000003038
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003038]
[ENSMUST00000062451]
[ENSMUST00000189314]
[ENSMUST00000190907]
|
| AlphaFold |
P17427 |
| PDB Structure |
ALPHA-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2 [X-RAY DIFFRACTION]
AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPSIN DPW PEPTIDE [X-RAY DIFFRACTION]
THE AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH AMPHIPHYSIN FXDXF [X-RAY DIFFRACTION]
AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPSIN DPW PEPTIDE [X-RAY DIFFRACTION]
AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15 DPF PEPTIDE [X-RAY DIFFRACTION]
AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15 DPF PEPTIDE [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF THE AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF THE AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF THE ALPHA-ADAPTIN APPENDAGE DOMAIN, FROM THE AP2 ADAPTOR COMPLEX, BOUND TO 2 PEPTIDES FROM SYNAPTOJANIN170 [X-RAY DIFFRACTION]
AP2 CLATHRIN ADAPTOR CORE with Dileucine peptide RM(phosphoS)QIKRLLSE [X-RAY DIFFRACTION]
>> 3 additional structures at PDB <<
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000003038
AA Change: S793T
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000003038
Gene: ENSMUSG00000002957
AA Change: S793T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Adaptin_N
|
29 |
590 |
1.7e-147 |
PFAM |
|
low complexity region
|
646 |
659 |
N/A |
INTRINSIC |
|
low complexity region
|
661 |
684 |
N/A |
INTRINSIC |
|
Alpha_adaptinC2
|
706 |
819 |
1.45e-26 |
SMART |
|
Pfam:Alpha_adaptin_C
|
825 |
933 |
2.8e-47 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000062451
|
| SMART Domains |
Protein: ENSMUSP00000049941
Gene: ENSMUSG00000048191
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
VWD
|
29 |
234 |
2.49e-14 |
SMART |
|
C8
|
267 |
340 |
5.46e-3 |
SMART |
|
Pfam:TIL
|
344 |
399 |
5.6e-14 |
PFAM |
|
VWC
|
401 |
469 |
2.57e-7 |
SMART |
|
VWD
|
428 |
591 |
4.81e-30 |
SMART |
|
C8
|
627 |
703 |
8.84e-21 |
SMART |
|
SCOP:d1coua_
|
706 |
769 |
7e-9 |
SMART |
|
Pfam:TIL
|
806 |
869 |
1.9e-9 |
PFAM |
|
VWC
|
871 |
941 |
8.52e-3 |
SMART |
|
VWD
|
898 |
1060 |
1.59e-30 |
SMART |
|
C8
|
1096 |
1170 |
5.52e-31 |
SMART |
|
Blast:CT
|
1184 |
1236 |
2e-19 |
BLAST |
|
low complexity region
|
1240 |
1269 |
N/A |
INTRINSIC |
|
low complexity region
|
1275 |
1293 |
N/A |
INTRINSIC |
|
low complexity region
|
1313 |
1337 |
N/A |
INTRINSIC |
|
low complexity region
|
1345 |
1374 |
N/A |
INTRINSIC |
|
internal_repeat_3
|
1375 |
1560 |
6.78e-17 |
PROSPERO |
|
internal_repeat_2
|
1426 |
1751 |
8.94e-34 |
PROSPERO |
|
low complexity region
|
1761 |
1780 |
N/A |
INTRINSIC |
|
low complexity region
|
1867 |
1887 |
N/A |
INTRINSIC |
|
low complexity region
|
1896 |
1910 |
N/A |
INTRINSIC |
|
low complexity region
|
1912 |
1946 |
N/A |
INTRINSIC |
|
low complexity region
|
1990 |
2004 |
N/A |
INTRINSIC |
|
low complexity region
|
2010 |
2020 |
N/A |
INTRINSIC |
|
internal_repeat_2
|
2036 |
2430 |
8.94e-34 |
PROSPERO |
|
internal_repeat_3
|
2329 |
2516 |
6.78e-17 |
PROSPERO |
|
low complexity region
|
2519 |
2536 |
N/A |
INTRINSIC |
|
low complexity region
|
2564 |
2587 |
N/A |
INTRINSIC |
|
low complexity region
|
2605 |
2630 |
N/A |
INTRINSIC |
|
low complexity region
|
2642 |
2677 |
N/A |
INTRINSIC |
|
low complexity region
|
2729 |
2762 |
N/A |
INTRINSIC |
|
Blast:CT
|
2765 |
2852 |
1e-44 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000189314
|
| SMART Domains |
Protein: ENSMUSP00000140388
Gene: ENSMUSG00000048191
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
VWD
|
29 |
193 |
2.64e-27 |
SMART |
|
C8
|
226 |
299 |
5.46e-3 |
SMART |
|
Pfam:TIL
|
303 |
358 |
1.4e-13 |
PFAM |
|
VWC
|
360 |
428 |
2.57e-7 |
SMART |
|
VWD
|
387 |
550 |
4.81e-30 |
SMART |
|
C8
|
586 |
662 |
8.84e-21 |
SMART |
|
internal_repeat_2
|
665 |
754 |
5.76e-7 |
PROSPERO |
|
Pfam:TIL
|
765 |
828 |
6.4e-9 |
PFAM |
|
VWC
|
830 |
900 |
8.52e-3 |
SMART |
|
VWD
|
857 |
1019 |
1.59e-30 |
SMART |
|
C8
|
1055 |
1129 |
5.52e-31 |
SMART |
|
low complexity region
|
1199 |
1228 |
N/A |
INTRINSIC |
|
low complexity region
|
1234 |
1252 |
N/A |
INTRINSIC |
|
low complexity region
|
1272 |
1296 |
N/A |
INTRINSIC |
|
low complexity region
|
1304 |
1333 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190907
|
| SMART Domains |
Protein: ENSMUSP00000140483
Gene: ENSMUSG00000048191
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
VWD
|
29 |
234 |
1.2e-16 |
SMART |
|
C8
|
267 |
340 |
4.2e-7 |
SMART |
|
Pfam:TIL
|
344 |
399 |
7.2e-11 |
PFAM |
|
VWC_def
|
401 |
469 |
1.2e-9 |
SMART |
|
VWD
|
428 |
591 |
2.4e-32 |
SMART |
|
C8
|
627 |
703 |
6.7e-25 |
SMART |
|
SCOP:d1coua_
|
706 |
769 |
5e-9 |
SMART |
|
Pfam:TIL
|
806 |
869 |
3.3e-6 |
PFAM |
|
VWC_def
|
871 |
941 |
4.1e-5 |
SMART |
|
VWD
|
898 |
1060 |
7.7e-33 |
SMART |
|
C8
|
1096 |
1170 |
4.2e-35 |
SMART |
|
Blast:CT
|
1184 |
1236 |
2e-19 |
BLAST |
|
low complexity region
|
1240 |
1269 |
N/A |
INTRINSIC |
|
low complexity region
|
1275 |
1293 |
N/A |
INTRINSIC |
|
low complexity region
|
1313 |
1337 |
N/A |
INTRINSIC |
|
low complexity region
|
1345 |
1374 |
N/A |
INTRINSIC |
|
low complexity region
|
1406 |
1419 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
1426 |
1822 |
3.44e-48 |
PROSPERO |
|
low complexity region
|
1826 |
1845 |
N/A |
INTRINSIC |
|
low complexity region
|
1932 |
1952 |
N/A |
INTRINSIC |
|
low complexity region
|
1961 |
1975 |
N/A |
INTRINSIC |
|
low complexity region
|
1977 |
2011 |
N/A |
INTRINSIC |
|
low complexity region
|
2055 |
2069 |
N/A |
INTRINSIC |
|
low complexity region
|
2075 |
2085 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
2101 |
2501 |
3.44e-48 |
PROSPERO |
|
low complexity region
|
2504 |
2524 |
N/A |
INTRINSIC |
|
low complexity region
|
2584 |
2601 |
N/A |
INTRINSIC |
|
low complexity region
|
2629 |
2652 |
N/A |
INTRINSIC |
|
low complexity region
|
2670 |
2695 |
N/A |
INTRINSIC |
|
low complexity region
|
2707 |
2742 |
N/A |
INTRINSIC |
|
low complexity region
|
2794 |
2827 |
N/A |
INTRINSIC |
|
Blast:CT
|
2830 |
2917 |
1e-44 |
BLAST |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a subunit of the AP-2 adaptor protein complex, which is involved in linking lipid and protein membrane components with the clathrin lattice. This interaction supports the formation of clathrin-coated vesicles, and the encoded subunit aids in the process by binding polyphosphoinositide-containing lipids in the cell membrane. [provided by RefSeq, Nov 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Btnl6 |
T |
C |
17: 34,727,153 (GRCm39) |
D459G |
probably damaging |
Het |
| Cacna1g |
C |
A |
11: 94,347,977 (GRCm39) |
D704Y |
probably damaging |
Het |
| Cby2 |
A |
G |
14: 75,820,829 (GRCm39) |
S299P |
probably benign |
Het |
| Cry2 |
A |
G |
2: 92,244,060 (GRCm39) |
I371T |
probably damaging |
Het |
| Dock3 |
A |
T |
9: 106,882,632 (GRCm39) |
F384I |
probably benign |
Het |
| Dpp4 |
T |
C |
2: 62,187,301 (GRCm39) |
|
probably null |
Het |
| Hecw1 |
G |
T |
13: 14,552,382 (GRCm39) |
D72E |
probably damaging |
Het |
| Htt |
T |
A |
5: 35,064,924 (GRCm39) |
W3046R |
probably damaging |
Het |
| Hydin |
A |
T |
8: 110,993,995 (GRCm39) |
N10Y |
unknown |
Het |
| Ighv8-8 |
T |
A |
12: 115,257,760 (GRCm39) |
T94S |
probably benign |
Het |
| Igkv4-58 |
A |
G |
6: 69,477,538 (GRCm39) |
S20P |
probably damaging |
Het |
| Il4i1 |
T |
C |
7: 44,486,919 (GRCm39) |
|
probably benign |
Het |
| Kif13a |
A |
T |
13: 46,918,099 (GRCm39) |
S403T |
probably benign |
Het |
| Klhl40 |
T |
C |
9: 121,612,446 (GRCm39) |
L616P |
probably damaging |
Het |
| Krt7 |
T |
C |
15: 101,325,491 (GRCm39) |
L440P |
possibly damaging |
Het |
| Lpin1 |
A |
G |
12: 16,594,678 (GRCm39) |
L755P |
probably damaging |
Het |
| Magee2 |
C |
A |
X: 103,899,134 (GRCm39) |
E506* |
probably null |
Het |
| Mast3 |
G |
A |
8: 71,234,207 (GRCm39) |
R143* |
probably null |
Het |
| Med12 |
T |
A |
X: 100,321,695 (GRCm39) |
H459Q |
probably benign |
Het |
| Mmp3 |
T |
C |
9: 7,450,149 (GRCm39) |
S294P |
probably benign |
Het |
| Muc6 |
T |
C |
7: 141,234,349 (GRCm39) |
Y714C |
probably damaging |
Het |
| Myh2 |
T |
C |
11: 67,074,349 (GRCm39) |
L662S |
probably damaging |
Het |
| Notch4 |
G |
T |
17: 34,791,542 (GRCm39) |
C567F |
probably damaging |
Het |
| Nprl3 |
A |
G |
11: 32,200,256 (GRCm39) |
I20T |
probably damaging |
Het |
| Or10ag2 |
A |
T |
2: 87,248,587 (GRCm39) |
D65V |
possibly damaging |
Het |
| Pcdhb19 |
A |
G |
18: 37,631,665 (GRCm39) |
T487A |
possibly damaging |
Het |
| Phlpp2 |
A |
G |
8: 110,667,467 (GRCm39) |
E1332G |
probably benign |
Het |
| Pick1 |
T |
C |
15: 79,125,481 (GRCm39) |
S113P |
probably damaging |
Het |
| Ptpru |
T |
C |
4: 131,507,178 (GRCm39) |
E1023G |
probably damaging |
Het |
| Rspry1 |
A |
C |
8: 95,376,962 (GRCm39) |
I382L |
probably benign |
Het |
| Sf3b3 |
A |
C |
8: 111,566,586 (GRCm39) |
V248G |
probably damaging |
Het |
| Smg5 |
T |
A |
3: 88,253,759 (GRCm39) |
Y126* |
probably null |
Het |
| Spin1 |
T |
C |
13: 51,281,973 (GRCm39) |
V22A |
probably benign |
Het |
| Stab1 |
C |
T |
14: 30,872,220 (GRCm39) |
R1189Q |
possibly damaging |
Het |
| Sytl5 |
A |
G |
X: 9,829,939 (GRCm39) |
D538G |
probably damaging |
Het |
| Taar7e |
T |
A |
10: 23,913,813 (GRCm39) |
M101K |
probably damaging |
Het |
| Taf4 |
A |
G |
2: 179,576,847 (GRCm39) |
V578A |
probably damaging |
Het |
| Tmem266 |
G |
T |
9: 55,344,517 (GRCm39) |
C383F |
probably benign |
Het |
| Trim34a |
T |
C |
7: 103,910,140 (GRCm39) |
|
probably null |
Het |
| Vmn2r104 |
T |
C |
17: 20,249,866 (GRCm39) |
T802A |
probably damaging |
Het |
| Vmn2r32 |
A |
C |
7: 7,467,029 (GRCm39) |
I833S |
probably damaging |
Het |
| Vmn2r85 |
T |
C |
10: 130,262,328 (GRCm39) |
D137G |
probably benign |
Het |
| Vps13c |
C |
T |
9: 67,853,308 (GRCm39) |
S2467L |
probably benign |
Het |
|
| Other mutations in Ap2a2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01112:Ap2a2
|
APN |
7 |
141,184,932 (GRCm39) |
splice site |
probably benign |
|
|
IGL02664:Ap2a2
|
APN |
7 |
141,209,136 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02973:Ap2a2
|
APN |
7 |
141,211,277 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R0345:Ap2a2
|
UTSW |
7 |
141,211,206 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2212:Ap2a2
|
UTSW |
7 |
141,178,689 (GRCm39) |
missense |
probably benign |
0.05 |
|
R2904:Ap2a2
|
UTSW |
7 |
141,199,391 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R3412:Ap2a2
|
UTSW |
7 |
141,178,689 (GRCm39) |
missense |
probably benign |
0.05 |
|
R3413:Ap2a2
|
UTSW |
7 |
141,178,689 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4962:Ap2a2
|
UTSW |
7 |
141,210,061 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5602:Ap2a2
|
UTSW |
7 |
141,184,855 (GRCm39) |
missense |
probably benign |
|
|
R5910:Ap2a2
|
UTSW |
7 |
141,178,691 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6488:Ap2a2
|
UTSW |
7 |
141,182,220 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7003:Ap2a2
|
UTSW |
7 |
141,209,109 (GRCm39) |
missense |
probably benign |
|
|
R7132:Ap2a2
|
UTSW |
7 |
141,199,478 (GRCm39) |
missense |
probably benign |
0.32 |
|
R7140:Ap2a2
|
UTSW |
7 |
141,178,777 (GRCm39) |
missense |
probably benign |
0.30 |
|
R7227:Ap2a2
|
UTSW |
7 |
141,200,784 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7412:Ap2a2
|
UTSW |
7 |
141,206,049 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7482:Ap2a2
|
UTSW |
7 |
141,182,210 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R7632:Ap2a2
|
UTSW |
7 |
141,211,236 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7991:Ap2a2
|
UTSW |
7 |
141,189,760 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8124:Ap2a2
|
UTSW |
7 |
141,178,757 (GRCm39) |
missense |
probably benign |
0.05 |
|
R8271:Ap2a2
|
UTSW |
7 |
141,200,812 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8308:Ap2a2
|
UTSW |
7 |
141,210,212 (GRCm39) |
missense |
probably benign |
|
|
R8462:Ap2a2
|
UTSW |
7 |
141,210,394 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8971:Ap2a2
|
UTSW |
7 |
141,191,258 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9368:Ap2a2
|
UTSW |
7 |
141,207,815 (GRCm39) |
missense |
probably benign |
0.10 |
|
R9502:Ap2a2
|
UTSW |
7 |
141,178,689 (GRCm39) |
missense |
probably benign |
0.05 |
|
| Posted On |
2016-08-02 |
Incidental Mutation