Incidental Mutation 'IGL03396:Trpv1'
| ID |
421270 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Trpv1
|
| Ensembl Gene |
ENSMUSG00000005952 |
| Gene Name |
transient receptor potential cation channel, subfamily V, member 1 |
| Synonyms |
VR-1, capsaicin receptor, Vr1, OTRPC1 |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.331)
|
| Stock # |
IGL03396
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
11 |
| Chromosomal Location |
73125118-73152068 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 73143882 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Serine
at position 238
(N238S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000104110
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000006106]
[ENSMUST00000102526]
[ENSMUST00000108470]
[ENSMUST00000138853]
|
| AlphaFold |
Q704Y3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000006106
AA Change: N546S
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000006106
Gene: ENSMUSG00000005952
AA Change: N546S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
22 |
35 |
N/A |
INTRINSIC |
|
ANK
|
154 |
186 |
1.6e2 |
SMART |
|
ANK
|
201 |
230 |
5.62e-4 |
SMART |
|
ANK
|
248 |
277 |
2.3e0 |
SMART |
|
Blast:ANK
|
285 |
321 |
4e-8 |
BLAST |
|
Blast:ANK
|
334 |
370 |
6e-9 |
BLAST |
|
PDB:3J5R|D
|
339 |
660 |
N/A |
PDB |
|
Blast:PHB
|
658 |
704 |
1e-8 |
BLAST |
|
PDB:3SUI|B
|
708 |
742 |
1e-15 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000102526
AA Change: N606S
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000099585
Gene: ENSMUSG00000005952
AA Change: N606S
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
22 |
35 |
N/A |
INTRINSIC |
|
ANK
|
154 |
186 |
1.6e2 |
SMART |
|
ANK
|
201 |
230 |
5.62e-4 |
SMART |
|
ANK
|
248 |
277 |
2.3e0 |
SMART |
|
Blast:ANK
|
285 |
321 |
5e-8 |
BLAST |
|
ANK
|
333 |
363 |
6.17e-1 |
SMART |
|
Pfam:Ion_trans
|
432 |
695 |
3e-12 |
PFAM |
|
Blast:PHB
|
718 |
764 |
1e-8 |
BLAST |
|
PDB:3SUI|B
|
768 |
802 |
1e-15 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108470
AA Change: N238S
PolyPhen 2
Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
|
| SMART Domains |
Protein: ENSMUSP00000104110
Gene: ENSMUSG00000005952
AA Change: N238S
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ANK
|
26 |
62 |
4e-9 |
BLAST |
|
Pfam:Ion_trans
|
111 |
315 |
1.8e-8 |
PFAM |
|
Blast:PHB
|
350 |
396 |
6e-9 |
BLAST |
|
PDB:3SUI|B
|
400 |
434 |
1e-15 |
PDB |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128113
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000138853
AA Change: N298S
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000116400
Gene: ENSMUSG00000005952
AA Change: N298S
| Domain | Start | End | E-Value | Type |
|---|
|
ANK
|
25 |
55 |
6.17e-1 |
SMART |
|
Pfam:Ion_trans
|
171 |
375 |
1.8e-8 |
PFAM |
|
Blast:PHB
|
410 |
456 |
6e-9 |
BLAST |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Capsaicin, the main pungent ingredient in hot chili peppers, elicits a sensation of burning pain by selectively activating sensory neurons that convey information about noxious stimuli to the central nervous system. The protein encoded by this gene is a receptor for capsaicin and is a non-selective cation channel that is structurally related to members of the TRP family of ion channels. This receptor is also activated by increases in temperature in the noxious range, suggesting that it functions as a transducer of painful thermal stimuli in vivo. Four transcript variants encoding the same protein, but with different 5' UTR sequence, have been described for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutant mice demonstrate abnormal nociception, abnormal anxiety- and conditioning-related behaviors, increased sensitivity to DOCA-salt-induced renal damage, resistance to diet-induced obesity, altered taste sensitivity, and impaired febrile response. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acadvl |
G |
A |
11: 69,902,239 (GRCm39) |
R457* |
probably null |
Het |
| Arl5b |
C |
A |
2: 15,079,915 (GRCm39) |
T153K |
probably damaging |
Het |
| Arsb |
A |
T |
13: 94,075,825 (GRCm39) |
Y436F |
probably benign |
Het |
| Azgp1 |
C |
T |
5: 137,983,445 (GRCm39) |
P40L |
possibly damaging |
Het |
| B020004C17Rik |
A |
G |
14: 57,253,993 (GRCm39) |
T39A |
possibly damaging |
Het |
| Cacna2d3 |
G |
A |
14: 29,442,834 (GRCm39) |
Q67* |
probably null |
Het |
| Cdcp2 |
C |
A |
4: 106,964,369 (GRCm39) |
Y406* |
probably null |
Het |
| Cep89 |
T |
A |
7: 35,128,603 (GRCm39) |
D585E |
probably benign |
Het |
| Cfap65 |
A |
G |
1: 74,943,801 (GRCm39) |
F1570S |
probably damaging |
Het |
| Cnfn |
A |
G |
7: 25,067,783 (GRCm39) |
|
probably benign |
Het |
| Fgd6 |
G |
A |
10: 93,880,318 (GRCm39) |
V391I |
probably benign |
Het |
| Fra10ac1 |
C |
T |
19: 38,189,994 (GRCm39) |
|
probably null |
Het |
| Gjd3 |
T |
C |
11: 102,691,353 (GRCm39) |
K217E |
probably benign |
Het |
| Il20rb |
T |
C |
9: 100,341,251 (GRCm39) |
E285G |
probably damaging |
Het |
| Ints2 |
T |
C |
11: 86,103,888 (GRCm39) |
T1086A |
probably damaging |
Het |
| Itih4 |
A |
T |
14: 30,609,906 (GRCm39) |
I79F |
probably damaging |
Het |
| Jmjd6 |
A |
T |
11: 116,732,077 (GRCm39) |
L208H |
probably damaging |
Het |
| Lilrb4b |
A |
G |
10: 51,357,253 (GRCm39) |
I30V |
possibly damaging |
Het |
| Limch1 |
A |
G |
5: 67,111,016 (GRCm39) |
N81S |
probably damaging |
Het |
| Mettl21e |
A |
T |
1: 44,245,759 (GRCm39) |
N162K |
possibly damaging |
Het |
| Ninl |
A |
G |
2: 150,808,132 (GRCm39) |
S299P |
possibly damaging |
Het |
| Obscn |
A |
G |
11: 58,964,404 (GRCm39) |
L3046P |
probably benign |
Het |
| Or1j14 |
C |
A |
2: 36,417,692 (GRCm39) |
S89R |
probably benign |
Het |
| Or5b98 |
T |
A |
19: 12,931,184 (GRCm39) |
V77E |
probably damaging |
Het |
| Or6c68 |
A |
G |
10: 129,157,916 (GRCm39) |
I141M |
probably benign |
Het |
| Pnpla8 |
G |
A |
12: 44,330,309 (GRCm39) |
R287H |
probably benign |
Het |
| Pot1a |
A |
C |
6: 25,745,913 (GRCm39) |
I596R |
possibly damaging |
Het |
| Prkaa1 |
A |
G |
15: 5,206,131 (GRCm39) |
D329G |
probably damaging |
Het |
| Ptprr |
T |
G |
10: 116,024,235 (GRCm39) |
V182G |
probably damaging |
Het |
| Rrp1b |
T |
A |
17: 32,276,237 (GRCm39) |
|
probably benign |
Het |
| Sec24a |
A |
G |
11: 51,599,794 (GRCm39) |
V837A |
probably benign |
Het |
| Slc17a6 |
A |
G |
7: 51,318,840 (GRCm39) |
Y494C |
probably damaging |
Het |
| Slc38a10 |
A |
T |
11: 120,019,301 (GRCm39) |
I360N |
probably damaging |
Het |
| Snrpb2 |
T |
C |
2: 142,913,377 (GRCm39) |
F194L |
possibly damaging |
Het |
| Tcam1 |
A |
G |
11: 106,176,212 (GRCm39) |
I313V |
probably benign |
Het |
| Usp20 |
T |
C |
2: 30,901,729 (GRCm39) |
V498A |
probably benign |
Het |
| Vmn2r23 |
T |
C |
6: 123,706,585 (GRCm39) |
S472P |
probably damaging |
Het |
| Vmn2r98 |
A |
T |
17: 19,290,107 (GRCm39) |
T548S |
possibly damaging |
Het |
| Zfp429 |
A |
T |
13: 67,544,159 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Trpv1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00160:Trpv1
|
APN |
11 |
73,151,188 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01348:Trpv1
|
APN |
11 |
73,129,078 (GRCm39) |
splice site |
probably null |
|
|
IGL01568:Trpv1
|
APN |
11 |
73,129,269 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01638:Trpv1
|
APN |
11 |
73,144,155 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02092:Trpv1
|
APN |
11 |
73,136,905 (GRCm39) |
splice site |
probably benign |
|
|
IGL02167:Trpv1
|
APN |
11 |
73,145,623 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02649:Trpv1
|
APN |
11 |
73,141,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03402:Trpv1
|
APN |
11 |
73,130,463 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R0112:Trpv1
|
UTSW |
11 |
73,144,098 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0433:Trpv1
|
UTSW |
11 |
73,143,834 (GRCm39) |
splice site |
probably benign |
|
|
R0482:Trpv1
|
UTSW |
11 |
73,130,255 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0494:Trpv1
|
UTSW |
11 |
73,151,268 (GRCm39) |
missense |
probably benign |
|
|
R1401:Trpv1
|
UTSW |
11 |
73,130,952 (GRCm39) |
splice site |
probably null |
|
|
R2032:Trpv1
|
UTSW |
11 |
73,129,211 (GRCm39) |
missense |
probably benign |
|
|
R2199:Trpv1
|
UTSW |
11 |
73,131,077 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2263:Trpv1
|
UTSW |
11 |
73,132,508 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2939:Trpv1
|
UTSW |
11 |
73,145,675 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2940:Trpv1
|
UTSW |
11 |
73,145,675 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3743:Trpv1
|
UTSW |
11 |
73,145,128 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3805:Trpv1
|
UTSW |
11 |
73,143,879 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4073:Trpv1
|
UTSW |
11 |
73,141,606 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R4294:Trpv1
|
UTSW |
11 |
73,131,290 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4650:Trpv1
|
UTSW |
11 |
73,129,089 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4700:Trpv1
|
UTSW |
11 |
73,142,110 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R5114:Trpv1
|
UTSW |
11 |
73,132,574 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5153:Trpv1
|
UTSW |
11 |
73,129,342 (GRCm39) |
missense |
probably benign |
0.32 |
|
R5319:Trpv1
|
UTSW |
11 |
73,130,415 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5516:Trpv1
|
UTSW |
11 |
73,136,809 (GRCm39) |
missense |
probably benign |
0.44 |
|
R5845:Trpv1
|
UTSW |
11 |
73,131,407 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6134:Trpv1
|
UTSW |
11 |
73,135,143 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6232:Trpv1
|
UTSW |
11 |
73,141,636 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R6383:Trpv1
|
UTSW |
11 |
73,136,862 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7200:Trpv1
|
UTSW |
11 |
73,130,412 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7319:Trpv1
|
UTSW |
11 |
73,141,620 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7323:Trpv1
|
UTSW |
11 |
73,151,163 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R7361:Trpv1
|
UTSW |
11 |
73,151,203 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7373:Trpv1
|
UTSW |
11 |
73,131,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7444:Trpv1
|
UTSW |
11 |
73,135,030 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R7488:Trpv1
|
UTSW |
11 |
73,129,355 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7513:Trpv1
|
UTSW |
11 |
73,131,367 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7762:Trpv1
|
UTSW |
11 |
73,145,048 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7991:Trpv1
|
UTSW |
11 |
73,132,583 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R8213:Trpv1
|
UTSW |
11 |
73,145,077 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8261:Trpv1
|
UTSW |
11 |
73,145,593 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R8753:Trpv1
|
UTSW |
11 |
73,135,082 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9176:Trpv1
|
UTSW |
11 |
73,130,481 (GRCm39) |
missense |
probably benign |
0.37 |
|
R9183:Trpv1
|
UTSW |
11 |
73,135,039 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R9190:Trpv1
|
UTSW |
11 |
73,145,148 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9222:Trpv1
|
UTSW |
11 |
73,141,681 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R9241:Trpv1
|
UTSW |
11 |
73,151,182 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9508:Trpv1
|
UTSW |
11 |
73,145,090 (GRCm39) |
missense |
|
|
|
R9727:Trpv1
|
UTSW |
11 |
73,130,347 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0067:Trpv1
|
UTSW |
11 |
73,135,027 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Z1176:Trpv1
|
UTSW |
11 |
73,131,333 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Trpv1
|
UTSW |
11 |
73,131,014 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Trpv1
|
UTSW |
11 |
73,145,599 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1186:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1186:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Z1187:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1187:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Z1188:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1188:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Z1189:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1189:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Z1190:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1190:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Z1191:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1191:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Z1192:Trpv1
|
UTSW |
11 |
73,145,117 (GRCm39) |
missense |
probably benign |
0.12 |
|
Z1192:Trpv1
|
UTSW |
11 |
73,131,427 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
| Posted On |
2016-08-02 |
Incidental Mutation