Mutagenetix > Incidental Mutation

Incidental Mutation 'R5328:Srsf1'

422161

Institutional Source

Beutler Lab

Gene Symbol

Srsf1

Ensembl Gene

ENSMUSG00000018379

Gene Name

serine and arginine-rich splicing factor 1

Synonyms

1110054N12Rik, 6330415C05Rik, 5730507C05Rik, Sfrs1

MMRRC Submission

042843-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5328 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

87938199-87944581 bp(+) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

G to T at 87940819 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000120595 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079866] [ENSMUST00000107920] [ENSMUST00000139129]

AlphaFold

Q6PDM2

PDB Structure

Solution structure of RRM domain in splicing factor 2 [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000079866

SMART Domains

Protein: ENSMUSP00000133517
Gene: ENSMUSG00000018379

Domain	Start	End	E-Value	Type
RRM	17	87	2.85e-19	SMART
low complexity region	89	119	N/A	INTRINSIC
RRM	122	188	4.97e-10	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000107920
AA Change: M252I

SMART Domains

Protein: ENSMUSP00000103553
Gene: ENSMUSG00000018379
AA Change: M252I

Domain	Start	End	E-Value	Type
RRM	17	87	2.85e-19	SMART
low complexity region	89	119	N/A	INTRINSIC
RRM	122	188	1.39e-8	SMART
low complexity region	196	246	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129337

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132983

Predicted Effect

unknown
Transcript: ENSMUST00000134824
AA Change: W99L

SMART Domains

Protein: ENSMUSP00000114549
Gene: ENSMUSG00000018379
AA Change: W99L

Domain	Start	End	E-Value	Type
low complexity region	2	28	N/A	INTRINSIC
RRM	32	98	1.43e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000139129

SMART Domains

Protein: ENSMUSP00000120595
Gene: ENSMUSG00000018379

Domain	Start	End	E-Value	Type
RRM	17	87	2.85e-19	SMART
low complexity region	89	119	N/A	INTRINSIC
RRM	122	188	1.39e-8	SMART
low complexity region	196	247	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000171976

Predicted Effect

unknown
Transcript: ENSMUST00000172186
AA Change: W51L

SMART Domains

Protein: ENSMUSP00000128190
Gene: ENSMUSG00000018379
AA Change: W51L

Domain	Start	End	E-Value	Type
SCOP:d1fjeb2	17	43	5e-3	SMART
PDB:2M8D\|B	22	47	8e-12	PDB
Blast:RRM	25	47	1e-8	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181900

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

MGI Phenotype

FUNCTION: The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2010]
PHENOTYPE: Homozygous null mice display early embryonic lethality. Cardiac specific conditional deletion mutants shows cardiac malfunction and premature death. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	T	A	5: 8,887,694 (GRCm39)	V860E	possibly damaging	Het
Abcc6	T	C	7: 45,641,735 (GRCm39)	D881G	probably benign	Het
Abcc9	A	G	6: 142,627,785 (GRCm39)	V415A	probably benign	Het
Adgrb3	A	C	1: 25,133,356 (GRCm39)	N1003K	possibly damaging	Het
Adora3	C	T	3: 105,814,619 (GRCm39)	T123I	probably benign	Het
Amotl2	A	C	9: 102,600,967 (GRCm39)	T345P	probably benign	Het
Arap3	C	T	18: 38,124,740 (GRCm39)	E247K	possibly damaging	Het
Atp8b1	A	T	18: 64,664,462 (GRCm39)	D1235E	probably benign	Het
Axl	A	T	7: 25,472,836 (GRCm39)	V400E	probably damaging	Het
Brd8	T	A	18: 34,741,034 (GRCm39)	N431Y	probably benign	Het
Cadps	A	T	14: 12,457,790 (GRCm38)	N1025K	probably benign	Het
Cblc	A	T	7: 19,526,505 (GRCm39)	S195T	possibly damaging	Het
Chd2	C	T	7: 73,113,429 (GRCm39)	A1184T	possibly damaging	Het
Chst10	G	A	1: 38,935,043 (GRCm39)		probably benign	Het
Col12a1	T	C	9: 79,527,342 (GRCm39)	K2663E	probably damaging	Het
Cspg4	A	T	9: 56,793,140 (GRCm39)	I292L	probably benign	Het
Cul1	T	C	6: 47,485,251 (GRCm39)	V294A	probably damaging	Het
Cyp2d11	G	A	15: 82,275,972 (GRCm39)	P203L	probably benign	Het
Dnaaf10	C	A	11: 17,172,220 (GRCm39)	P103Q	probably damaging	Het
Dscam	T	C	16: 96,474,878 (GRCm39)	H1228R	probably benign	Het
Eif3l	A	T	15: 78,977,561 (GRCm39)	K534*	probably null	Het
Enpep	T	C	3: 129,074,159 (GRCm39)	E796G	probably benign	Het
Ext1	C	A	15: 52,939,213 (GRCm39)	W612L	probably damaging	Het
Faap100	T	A	11: 120,268,458 (GRCm39)	E105V	possibly damaging	Het
Fam117a	T	A	11: 95,254,996 (GRCm39)		probably null	Het
Fan1	A	T	7: 64,004,217 (GRCm39)	Y750N	probably damaging	Het
Fat4	T	A	3: 39,011,017 (GRCm39)	I2039N	probably damaging	Het
Gabrr2	G	T	4: 33,082,565 (GRCm39)	D106Y	probably damaging	Het
Gak	A	C	5: 108,764,867 (GRCm39)	C145G	possibly damaging	Het
Galnt14	A	T	17: 73,812,454 (GRCm39)	N406K	possibly damaging	Het
Gm10439	T	G	X: 148,419,159 (GRCm39)	*434E	probably null	Het
Gm10837	G	T	14: 122,728,190 (GRCm39)	R22L	unknown	Het
Gm19965	T	A	1: 116,749,148 (GRCm39)	H276Q	possibly damaging	Het
Gm43517	T	C	12: 49,437,939 (GRCm39)		probably benign	Het
Greb1l	A	T	18: 10,553,720 (GRCm39)	I1574F	probably damaging	Het
Gzme	G	A	14: 56,355,224 (GRCm39)	H236Y	probably benign	Het
Heatr5b	G	A	17: 79,133,791 (GRCm39)	T266I	possibly damaging	Het
Hk3	T	C	13: 55,161,306 (GRCm39)	I185V	probably benign	Het
Hnrnpr	A	G	4: 136,066,527 (GRCm39)	E302G	probably benign	Het
Itgal	T	C	7: 126,910,847 (GRCm39)		probably null	Het
Itk	A	G	11: 46,222,703 (GRCm39)	S583P	probably benign	Het
Loxhd1	A	T	18: 77,498,268 (GRCm39)	I1448F	probably damaging	Het
Macf1	GCCCCC	GCCCCCC	4: 123,244,784 (GRCm39)		probably null	Het
Man2a2	A	T	7: 80,018,504 (GRCm39)	F118L	probably benign	Het
Mfsd5	T	A	15: 102,189,447 (GRCm39)	V273E	probably damaging	Het
Nfe2l2	A	G	2: 75,507,200 (GRCm39)	L300P	probably damaging	Het
Nt5c1a	T	G	4: 123,102,786 (GRCm39)	L122R	possibly damaging	Het
Nt5c3b	A	G	11: 100,331,067 (GRCm39)	F42S	probably damaging	Het
Or2av9	C	A	11: 58,381,255 (GRCm39)	A109S	possibly damaging	Het
Or51g2	T	A	7: 102,623,175 (GRCm39)	N8I	possibly damaging	Het
Pabpc1	A	T	15: 36,603,121 (GRCm39)	D204E	probably benign	Het
Panx2	A	G	15: 88,952,298 (GRCm39)	N255S	probably damaging	Het
Pcnt	A	G	10: 76,247,553 (GRCm39)	L993P	probably damaging	Het
Pfas	A	T	11: 68,879,418 (GRCm39)	C1160S	probably damaging	Het
Plekhh3	T	A	11: 101,058,484 (GRCm39)		probably benign	Het
Plod3	T	A	5: 137,018,537 (GRCm39)	N258K	probably damaging	Het
Prr14l	T	C	5: 32,987,365 (GRCm39)	Q710R	probably benign	Het
Rnf216	G	T	5: 143,078,754 (GRCm39)	T65K	possibly damaging	Het
Samd9l	T	C	6: 3,376,739 (GRCm39)	E174G	probably damaging	Het
Septin12	T	A	16: 4,811,857 (GRCm39)	M63L	possibly damaging	Het
Sh3bgrl2	T	A	9: 83,459,509 (GRCm39)	D22E	probably benign	Het
Sirpd	T	C	3: 15,397,234 (GRCm39)	M17V	unknown	Het
Skil	A	G	3: 31,171,718 (GRCm39)	K488R	probably benign	Het
Slamf6	T	A	1: 171,765,662 (GRCm39)	I262K	probably benign	Het
Slc27a3	T	C	3: 90,294,139 (GRCm39)	D470G	probably damaging	Het
Sorbs3	A	T	14: 70,418,623 (GRCm39)	V680E	probably damaging	Het
Sox9	C	T	11: 112,673,484 (GRCm39)	T25I	probably benign	Het
Stard9	A	C	2: 120,529,711 (GRCm39)	E1989D	probably damaging	Het
Thumpd2	T	A	17: 81,351,591 (GRCm39)	I277F	possibly damaging	Het
Tinag	C	A	9: 76,912,913 (GRCm39)	G299*	probably null	Het
Tk2	A	T	8: 104,955,931 (GRCm39)		probably null	Het
Tmem44	A	G	16: 30,359,709 (GRCm39)	S210P	possibly damaging	Het
Traf3ip1	C	A	1: 91,447,791 (GRCm39)	P423T	probably damaging	Het
Trmt12	A	G	15: 58,744,704 (GRCm39)	D34G	probably damaging	Het
Ttc39b	A	G	4: 83,180,178 (GRCm39)	Y72H	probably damaging	Het
Ttn	G	A	2: 76,708,755 (GRCm39)		probably benign	Het
Ttyh2	T	A	11: 114,600,894 (GRCm39)	I381N	possibly damaging	Het
Uaca	A	T	9: 60,777,814 (GRCm39)	N734Y	probably benign	Het
Usp34	T	C	11: 23,414,616 (GRCm39)	I2853T	probably benign	Het
Usp34	G	A	11: 23,438,659 (GRCm39)	G3407D	probably benign	Het
Vmn2r78	A	G	7: 86,570,238 (GRCm39)	Y252C	probably damaging	Het
Wdr19	G	A	5: 65,401,522 (GRCm39)	C979Y	probably damaging	Het
Yeats2	A	T	16: 19,989,955 (GRCm39)	H277L	probably damaging	Het
Zbtb2	T	C	10: 4,319,267 (GRCm39)	Y253C	possibly damaging	Het
Zfat	C	A	15: 68,051,677 (GRCm39)	G706C	probably damaging	Het
Zfp106	A	T	2: 120,350,898 (GRCm39)	N1584K	possibly damaging	Het

Other mutations in Srsf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01365:Srsf1	APN	11	87,940,007 (GRCm39)	missense	possibly damaging	0.88
IGL02949:Srsf1	APN	11	87,940,352 (GRCm39)	intron	probably benign
IGL03100:Srsf1	APN	11	87,939,954 (GRCm39)	missense	probably damaging	1.00
R4898:Srsf1	UTSW	11	87,940,788 (GRCm39)	splice site	probably null
R5261:Srsf1	UTSW	11	87,938,684 (GRCm39)	missense	possibly damaging	0.96
R5593:Srsf1	UTSW	11	87,938,705 (GRCm39)	missense	possibly damaging	0.47
R5849:Srsf1	UTSW	11	87,938,684 (GRCm39)	missense	possibly damaging	0.56
R6143:Srsf1	UTSW	11	87,940,425 (GRCm39)	intron	probably benign
R7151:Srsf1	UTSW	11	87,940,084 (GRCm39)	nonsense	probably null
R8099:Srsf1	UTSW	11	87,940,082 (GRCm39)	missense	probably benign
R8294:Srsf1	UTSW	11	87,939,467 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- ATGGGCTAAAGTGTTGAATTGC -3'
(R):5'- ACCCTCGCCTTCTAGTATAAGG -3'

Sequencing Primer
(F):5'- GAATTGCATTCTTGTGTAATATCCCC -3'
(R):5'- GCCTTCTAGTATAAGGTCAATACTGC -3'

Posted On

2016-08-04