Mutagenetix > Incidental Mutation

Incidental Mutation 'R5345:Zscan20'

422549

Institutional Source

Beutler Lab

Gene Symbol

Zscan20

Ensembl Gene

ENSMUSG00000061894

Gene Name

zinc finger and SCAN domains 20

Synonyms

Zfp31

MMRRC Submission

042924-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.223) question?

Stock #

R5345 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

128477332-128503891 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 128481914 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Alanine at position 583 (S583A)

Ref Sequence

ENSEMBL: ENSMUSP00000095487 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097877] [ENSMUST00000135309]

AlphaFold

B2KFW1

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000084276

Predicted Effect

probably benign
Transcript: ENSMUST00000097877
AA Change: S583A

PolyPhen 2 Score 0.037 (Sensitivity: 0.94; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000095487
Gene: ENSMUSG00000061894
AA Change: S583A

Domain	Start	End	E-Value	Type
SCAN	41	147	1.31e-54	SMART
low complexity region	275	284	N/A	INTRINSIC
SANT	314	378	8.04e-1	SMART
SANT	475	539	4.85e-3	SMART
ZnF_C2H2	725	747	2.61e1	SMART
ZnF_C2H2	753	775	9.88e-5	SMART
ZnF_C2H2	781	803	1.12e-3	SMART
ZnF_C2H2	862	884	3.21e-4	SMART
ZnF_C2H2	890	912	1.04e-3	SMART
ZnF_C2H2	918	940	1.56e-2	SMART
ZnF_C2H2	946	968	2.84e-5	SMART
ZnF_C2H2	974	996	4.54e-4	SMART
ZnF_C2H2	1002	1024	1.47e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000135309

SMART Domains

Protein: ENSMUSP00000119338
Gene: ENSMUSG00000061894

Domain	Start	End	E-Value	Type
SCAN	41	147	1.31e-54	SMART
low complexity region	279	293	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.5%
20x: 96.0%

Validation Efficiency

98% (65/66)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abl1	T	A	2: 31,687,059 (GRCm39)	S519T	probably damaging	Het
Acap2	A	G	16: 30,926,944 (GRCm39)	S524P	probably benign	Het
Acot1	T	A	12: 84,063,942 (GRCm39)	I350N	probably damaging	Het
Adam8	A	G	7: 139,567,552 (GRCm39)	V397A	probably benign	Het
Ankar	A	G	1: 72,709,310 (GRCm39)	M735T	possibly damaging	Het
Cacna1c	A	G	6: 118,633,497 (GRCm39)		probably null	Het
Cdc25b	A	G	2: 131,034,516 (GRCm39)	S222G	probably benign	Het
Celsr3	T	C	9: 108,709,323 (GRCm39)	S1390P	probably damaging	Het
Clca4a	T	G	3: 144,676,222 (GRCm39)	D104A	probably damaging	Het
Clcn6	A	T	4: 148,123,206 (GRCm39)		probably benign	Het
Coq8b	A	G	7: 26,949,773 (GRCm39)	T320A	probably benign	Het
Cspg5	A	T	9: 110,075,698 (GRCm39)	M145L	probably benign	Het
Cyp2c67	T	A	19: 39,614,676 (GRCm39)	I284F	probably benign	Het
Eya4	T	C	10: 22,985,947 (GRCm39)	I565V	probably benign	Het
Fbxw11	A	G	11: 32,688,471 (GRCm39)	N410S	probably damaging	Het
Gabrb2	C	T	11: 42,517,636 (GRCm39)	A448V	possibly damaging	Het
Hectd4	A	G	5: 121,402,037 (GRCm39)	D375G	possibly damaging	Het
Itsn2	T	C	12: 4,722,783 (GRCm39)	V1073A	probably damaging	Het
Kif5c	A	G	2: 49,613,078 (GRCm39)	T139A	probably benign	Het
L1td1	G	A	4: 98,624,684 (GRCm39)	G293D	probably damaging	Het
Lama1	A	G	17: 68,124,558 (GRCm39)	M2873V	probably benign	Het
Msantd5f6	A	T	4: 73,319,514 (GRCm39)	W77R	probably damaging	Het
Myo15a	A	G	11: 60,388,364 (GRCm39)	R1960G	probably damaging	Het
Nbeal1	T	C	1: 60,367,369 (GRCm39)		probably null	Het
Ndufb4	A	G	16: 37,474,540 (GRCm39)		probably null	Het
Nup153	A	T	13: 46,840,341 (GRCm39)	L1089*	probably null	Het
Or10g3	G	A	14: 52,609,725 (GRCm39)	R262*	probably null	Het
Or2l13b	T	A	16: 19,349,527 (GRCm39)	I48F	probably damaging	Het
Or5aq1b	A	G	2: 86,901,836 (GRCm39)	V214A	possibly damaging	Het
P2rx1	A	G	11: 72,900,056 (GRCm39)	T158A	probably damaging	Het
Park7	A	G	4: 150,992,880 (GRCm39)		probably benign	Het
Parl	A	T	16: 20,116,892 (GRCm39)	F102I	probably damaging	Het
Plxnc1	T	A	10: 94,685,831 (GRCm39)	H720L	probably benign	Het
Ptpn4	A	G	1: 119,693,207 (GRCm39)	S140P	probably benign	Het
Rel	A	G	11: 23,692,462 (GRCm39)	S524P	probably benign	Het
Ripply2	A	G	9: 86,901,779 (GRCm39)		probably null	Het
Rmc1	C	T	18: 12,312,234 (GRCm39)	T158M	probably benign	Het
Rps4l-ps	T	C	7: 114,526,433 (GRCm39)		noncoding transcript	Het
Rtn4ip1	T	C	10: 43,808,466 (GRCm39)	L81P	probably damaging	Het
Sap130	T	C	18: 31,781,251 (GRCm39)	L138P	probably benign	Het
Scp2	A	T	4: 107,912,776 (GRCm39)		probably null	Het
Sec24c	T	A	14: 20,743,288 (GRCm39)	M970K	probably benign	Het
Setd5	C	T	6: 113,092,968 (GRCm39)	P340L	probably damaging	Het
Sgcg	A	T	14: 61,483,218 (GRCm39)	M61K	probably damaging	Het
Slc22a27	C	G	19: 7,843,303 (GRCm39)	A359P	probably damaging	Het
Slc34a1	A	G	13: 55,548,331 (GRCm39)	R21G	probably benign	Het
Slc7a14	A	C	3: 31,278,006 (GRCm39)	L533W	probably damaging	Het
Srsf9	A	G	5: 115,468,595 (GRCm39)	D77G	probably benign	Het
Tab1	A	T	15: 80,034,014 (GRCm39)	E119V	possibly damaging	Het
Tcstv5	A	T	13: 120,411,384 (GRCm39)	V74E	probably damaging	Het
Tnrc6c	C	T	11: 117,614,113 (GRCm39)	A757V	possibly damaging	Het
Tradd	A	T	8: 105,986,556 (GRCm39)	I72N	probably damaging	Het
Trbv12-1	C	T	6: 41,090,781 (GRCm39)	T51M	probably benign	Het
Tsga10	T	C	1: 37,802,392 (GRCm39)	K605E	probably damaging	Het
Vwc2l	A	G	1: 70,768,077 (GRCm39)	D47G	probably damaging	Het
Zfp647	T	A	15: 76,795,695 (GRCm39)	T322S	possibly damaging	Het

Other mutations in Zscan20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00552:Zscan20	APN	4	128,480,428 (GRCm39)	missense	probably damaging	0.99
IGL01454:Zscan20	APN	4	128,483,334 (GRCm39)	missense	probably benign	0.01
IGL01934:Zscan20	APN	4	128,486,277 (GRCm39)	missense	possibly damaging	0.94
IGL02288:Zscan20	APN	4	128,480,436 (GRCm39)	missense	probably damaging	1.00
IGL02336:Zscan20	APN	4	128,479,587 (GRCm39)	missense	probably damaging	1.00
IGL02385:Zscan20	APN	4	128,498,392 (GRCm39)	missense	possibly damaging	0.66
IGL02437:Zscan20	APN	4	128,482,210 (GRCm39)	missense	probably damaging	1.00
IGL02450:Zscan20	APN	4	128,480,450 (GRCm39)	missense	probably damaging	0.99
R0034:Zscan20	UTSW	4	128,479,455 (GRCm39)	missense	probably damaging	0.96
R0034:Zscan20	UTSW	4	128,479,455 (GRCm39)	missense	probably damaging	0.96
R0070:Zscan20	UTSW	4	128,479,675 (GRCm39)	missense	possibly damaging	0.73
R0142:Zscan20	UTSW	4	128,479,630 (GRCm39)	missense	probably benign	0.38
R0496:Zscan20	UTSW	4	128,485,682 (GRCm39)	missense	probably benign	0.42
R0567:Zscan20	UTSW	4	128,483,243 (GRCm39)	critical splice donor site	probably null
R1333:Zscan20	UTSW	4	128,481,889 (GRCm39)	missense	possibly damaging	0.61
R1716:Zscan20	UTSW	4	128,480,334 (GRCm39)	missense	probably damaging	0.96
R2302:Zscan20	UTSW	4	128,482,057 (GRCm39)	missense	probably damaging	1.00
R3870:Zscan20	UTSW	4	128,480,218 (GRCm39)	missense	probably damaging	1.00
R4611:Zscan20	UTSW	4	128,481,899 (GRCm39)	missense	probably benign	0.00
R4884:Zscan20	UTSW	4	128,481,958 (GRCm39)	missense	possibly damaging	0.56
R4972:Zscan20	UTSW	4	128,486,152 (GRCm39)	missense	probably benign	0.39
R5033:Zscan20	UTSW	4	128,479,921 (GRCm39)	missense	probably benign	0.01
R5160:Zscan20	UTSW	4	128,486,275 (GRCm39)	missense	possibly damaging	0.69
R5182:Zscan20	UTSW	4	128,480,504 (GRCm39)	missense	possibly damaging	0.71
R5214:Zscan20	UTSW	4	128,482,109 (GRCm39)	missense	probably benign	0.00
R5863:Zscan20	UTSW	4	128,480,141 (GRCm39)	nonsense	probably null
R6217:Zscan20	UTSW	4	128,498,327 (GRCm39)	missense	probably damaging	1.00
R6597:Zscan20	UTSW	4	128,479,539 (GRCm39)	missense	probably damaging	0.96
R6751:Zscan20	UTSW	4	128,479,668 (GRCm39)	missense	probably damaging	1.00
R6852:Zscan20	UTSW	4	128,483,515 (GRCm39)	missense	probably damaging	1.00
R7172:Zscan20	UTSW	4	128,479,469 (GRCm39)	nonsense	probably null
R7338:Zscan20	UTSW	4	128,481,943 (GRCm39)	missense	probably benign
R7805:Zscan20	UTSW	4	128,479,599 (GRCm39)	missense	probably damaging	1.00
R8063:Zscan20	UTSW	4	128,480,028 (GRCm39)	missense	probably benign	0.01
R8244:Zscan20	UTSW	4	128,479,759 (GRCm39)	missense	probably benign	0.32
R8421:Zscan20	UTSW	4	128,479,620 (GRCm39)	missense	probably damaging	1.00
R8752:Zscan20	UTSW	4	128,479,480 (GRCm39)	missense	probably damaging	1.00
R8939:Zscan20	UTSW	4	128,498,315 (GRCm39)	missense	probably benign	0.00
R8971:Zscan20	UTSW	4	128,479,848 (GRCm39)	missense	probably damaging	1.00
R8971:Zscan20	UTSW	4	128,479,847 (GRCm39)	missense	probably damaging	1.00
R9149:Zscan20	UTSW	4	128,481,914 (GRCm39)	missense	probably benign	0.15
R9458:Zscan20	UTSW	4	128,480,639 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- GCTCAGAGACGAAGATGATATGCC -3'
(R):5'- GAACAATGCCGCTACCGA -3'

Sequencing Primer
(F):5'- GGGGCAAATAAATCTCCTCTGTGC -3'
(R):5'- TGCCGCTACCGATTCAAG -3'

Posted On

2016-08-04