Incidental Mutation 'R5356:Ndc80'
ID424133
Institutional Source Beutler Lab
Gene Symbol Ndc80
Ensembl Gene ENSMUSG00000024056
Gene NameNDC80 kinetochore complex component
Synonyms2610020P18Rik, Kntc2, HEC1
MMRRC Submission 042935-MU
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.964) question?
Stock #R5356 (G1)
Quality Score225
Status Not validated
Chromosome17
Chromosomal Location71496100-71526857 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to T at 71521108 bp
ZygosityHeterozygous
Amino Acid Change Serine to Threonine at position 75 (S75T)
Ref Sequence ENSEMBL: ENSMUSP00000024851 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000024851]
Predicted Effect possibly damaging
Transcript: ENSMUST00000024851
AA Change: S75T

PolyPhen 2 Score 0.757 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000024851
Gene: ENSMUSG00000024056
AA Change: S75T

DomainStartEndE-ValueType
Pfam:Ndc80_HEC 51 204 3.6e-54 PFAM
coiled coil region 249 423 N/A INTRINSIC
coiled coil region 458 599 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a component of the NDC80 kinetochore complex. The encoded protein consists of an N-terminal microtubule binding domain and a C-terminal coiled-coiled domain that interacts with other components of the complex. This protein functions to organize and stabilize microtubule-kinetochore interactions and is required for proper chromosome segregation. [provided by RefSeq, Oct 2011]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adad1 C T 3: 37,065,256 T162I probably damaging Het
Adam22 C A 5: 8,090,182 G202W probably damaging Het
Amn1 T C 6: 149,166,894 I205M possibly damaging Het
Ankrd50 A C 3: 38,456,185 S678A probably damaging Het
Atg13 G A 2: 91,692,466 R78* probably null Het
Bmper T G 9: 23,373,861 F235L probably benign Het
Btn2a2 C T 13: 23,482,875 V187I probably benign Het
Cabs1 G A 5: 87,979,633 V48I probably benign Het
Cacnb3 A G 15: 98,641,617 I212V probably damaging Het
Cdc45 C T 16: 18,795,897 R205H probably damaging Het
Cep162 T C 9: 87,206,895 E978G probably damaging Het
Cmya5 A T 13: 93,063,485 L3445Q probably damaging Het
Cntrl T A 2: 35,148,899 L1067* probably null Het
Cyp20a1 G A 1: 60,379,387 V329I probably benign Het
Cyp2d11 A T 15: 82,390,511 N288K probably benign Het
D430041D05Rik T G 2: 104,255,409 T932P probably damaging Het
Dlk1 T A 12: 109,455,521 C54S probably damaging Het
Dupd1 G A 14: 21,677,023 R186W probably benign Het
Entpd6 T A 2: 150,770,383 F416L probably damaging Het
Evx1 A G 6: 52,316,617 T257A probably benign Het
Fpr-rs3 A T 17: 20,624,334 S182T probably damaging Het
Glra3 A T 8: 55,940,901 I16F probably benign Het
Gm11437 C A 11: 84,152,687 L259F possibly damaging Het
Gorasp1 A T 9: 119,927,958 L386Q probably damaging Het
Gpsm1 T C 2: 26,340,562 V508A possibly damaging Het
Gstm1 T A 3: 108,012,736 I180F probably benign Het
Hc T C 2: 34,994,995 D1400G probably benign Het
Lrp2 A G 2: 69,464,708 V3422A possibly damaging Het
Map3k4 A G 17: 12,247,308 V1128A possibly damaging Het
Mboat2 G C 12: 24,957,573 V363L probably benign Het
Mgat3 A G 15: 80,211,610 I213V possibly damaging Het
Mgat3 A G 15: 80,212,454 N494S probably damaging Het
Mtf2 A T 5: 108,106,610 T426S possibly damaging Het
Muc3a T C 5: 137,210,564 I151V probably benign Het
Myh6 T C 14: 54,953,762 E874G probably damaging Het
Myo15 G A 11: 60,498,366 G2030R probably damaging Het
Ncdn T C 4: 126,747,228 Y493C probably damaging Het
Ncoa6 A G 2: 155,421,192 F441L probably damaging Het
Nf1 T C 11: 79,473,456 F1571L possibly damaging Het
Nme8 A G 13: 19,652,299 F236L probably damaging Het
Nsmce4a C A 7: 130,537,048 V289L probably damaging Het
Ntrk2 A T 13: 59,060,242 D634V probably damaging Het
Pcsk6 G C 7: 65,970,592 E479Q probably damaging Het
Pkd1 A G 17: 24,593,577 Q3828R probably damaging Het
Ptov1 T A 7: 44,864,665 T295S probably damaging Het
Ptprf A G 4: 118,226,338 M824T probably benign Het
Rbm6 T A 9: 107,852,666 H129L probably damaging Het
Rbm8a2 A G 1: 175,978,689 I74T possibly damaging Het
Ret A G 6: 118,197,118 S6P possibly damaging Het
Rspo3 A T 10: 29,500,068 C70* probably null Het
Sike1 C A 3: 103,001,790 A202D possibly damaging Het
Slc9a3r2 A G 17: 24,641,971 V88A probably damaging Het
Slco4c1 G T 1: 96,832,110 P499H probably damaging Het
Smg1 A G 7: 118,195,133 probably benign Het
Tmem135 A G 7: 89,305,515 V98A probably benign Het
Tor4a T A 2: 25,195,906 probably null Het
Txlna A G 4: 129,630,373 F397S probably damaging Het
Tyk2 A G 9: 21,115,744 I581T probably benign Het
Unc13a C T 8: 71,662,514 D164N probably benign Het
Vwa3b T C 1: 37,114,583 I502T probably damaging Het
Xrcc6 A G 15: 82,029,218 T6A probably benign Het
Zfp524 T C 7: 5,018,433 V320A probably benign Het
Other mutations in Ndc80
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01522:Ndc80 APN 17 71499325 missense probably benign 0.23
IGL01691:Ndc80 APN 17 71508639 missense possibly damaging 0.72
IGL02175:Ndc80 APN 17 71511419 missense probably benign 0.00
IGL02293:Ndc80 APN 17 71514278 missense probably damaging 1.00
IGL03086:Ndc80 APN 17 71520925 missense probably benign 0.01
R0730:Ndc80 UTSW 17 71496246 missense probably benign
R1749:Ndc80 UTSW 17 71501555 missense probably benign 0.11
R2061:Ndc80 UTSW 17 71514218 missense probably benign 0.17
R2099:Ndc80 UTSW 17 71504778 missense probably benign 0.00
R2911:Ndc80 UTSW 17 71500376 missense probably benign
R4598:Ndc80 UTSW 17 71521068 missense probably damaging 1.00
R4599:Ndc80 UTSW 17 71521068 missense probably damaging 1.00
R4678:Ndc80 UTSW 17 71520758 critical splice donor site probably null
R4775:Ndc80 UTSW 17 71514270 missense probably damaging 1.00
R5029:Ndc80 UTSW 17 71508765 missense probably benign 0.01
R5283:Ndc80 UTSW 17 71521135 missense probably benign 0.03
R5412:Ndc80 UTSW 17 71514231 missense probably damaging 1.00
R5542:Ndc80 UTSW 17 71500281 missense probably benign 0.21
R6031:Ndc80 UTSW 17 71511488 missense probably benign 0.00
R6031:Ndc80 UTSW 17 71511488 missense probably benign 0.00
R6051:Ndc80 UTSW 17 71517578 missense probably benign 0.14
R6680:Ndc80 UTSW 17 71517545 missense probably null 0.46
Predicted Primers PCR Primer
(F):5'- GATGGAGCTTGCAGAGACTTC -3'
(R):5'- ATAATGAGCGGTGGTGGCAC -3'

Sequencing Primer
(F):5'- GCTTGCAGAGACTTCATGGATAC -3'
(R):5'- TGTGTGCTGAACAAACCACTG -3'
Posted On2016-08-04