Incidental Mutation 'R5290:Vmn2r108'
ID |
424684 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r108
|
Ensembl Gene |
ENSMUSG00000091805 |
Gene Name |
vomeronasal 2, receptor 108 |
Synonyms |
EG627805 |
MMRRC Submission |
042873-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.073)
|
Stock # |
R5290 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
17 |
Chromosomal Location |
20682635-20701498 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to A
at 20691665 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Arginine to Leucine
at position 286
(R286L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000130373
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000167314]
|
AlphaFold |
E9PYS0 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000167314
AA Change: R286L
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000130373 Gene: ENSMUSG00000091805 AA Change: R286L
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
83 |
467 |
6e-33 |
PFAM |
Pfam:NCD3G
|
510 |
563 |
9.2e-22 |
PFAM |
Pfam:7tm_3
|
593 |
831 |
2.2e-51 |
PFAM |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.8%
|
Validation Efficiency |
97% (70/72) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 62 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1110008E08Rik |
A |
T |
16: 90,351,098 (GRCm39) |
|
noncoding transcript |
Het |
2700049A03Rik |
C |
A |
12: 71,235,565 (GRCm39) |
P1172T |
probably benign |
Het |
Abi3bp |
T |
A |
16: 56,462,838 (GRCm39) |
|
probably null |
Het |
Apod |
T |
A |
16: 31,129,884 (GRCm39) |
H24L |
probably damaging |
Het |
Arfgef3 |
T |
C |
10: 18,476,208 (GRCm39) |
E1537G |
probably damaging |
Het |
B020004C17Rik |
T |
C |
14: 57,254,036 (GRCm39) |
V53A |
possibly damaging |
Het |
Ccdc113 |
C |
A |
8: 96,267,424 (GRCm39) |
|
probably null |
Het |
Cd7 |
T |
G |
11: 120,928,936 (GRCm39) |
D105A |
probably damaging |
Het |
Celsr3 |
C |
T |
9: 108,720,357 (GRCm39) |
T2550M |
probably benign |
Het |
Cibar1 |
T |
C |
4: 12,171,195 (GRCm39) |
Q86R |
probably benign |
Het |
Col6a5 |
C |
T |
9: 105,823,282 (GRCm39) |
G25D |
unknown |
Het |
Cps1 |
A |
G |
1: 67,211,868 (GRCm39) |
M679V |
probably benign |
Het |
Dnai4 |
A |
T |
4: 102,906,730 (GRCm39) |
D694E |
probably benign |
Het |
Dync1h1 |
A |
T |
12: 110,581,502 (GRCm39) |
T316S |
probably benign |
Het |
Edrf1 |
T |
C |
7: 133,252,295 (GRCm39) |
Y449H |
probably damaging |
Het |
Fkbpl |
G |
A |
17: 34,864,303 (GRCm39) |
A24T |
probably benign |
Het |
Flg2 |
A |
T |
3: 93,127,873 (GRCm39) |
I2262L |
unknown |
Het |
Flnc |
T |
C |
6: 29,457,553 (GRCm39) |
L2417P |
probably damaging |
Het |
Gabrp |
A |
T |
11: 33,517,310 (GRCm39) |
Y121N |
probably damaging |
Het |
Gdpd4 |
A |
G |
7: 97,615,543 (GRCm39) |
T123A |
possibly damaging |
Het |
Gpr162 |
C |
A |
6: 124,838,232 (GRCm39) |
M139I |
probably benign |
Het |
Greb1l |
G |
A |
18: 10,542,427 (GRCm39) |
E1341K |
probably damaging |
Het |
Gsn |
G |
A |
2: 35,186,484 (GRCm39) |
S410N |
probably benign |
Het |
Gtf2f2 |
T |
C |
14: 76,135,089 (GRCm39) |
Y212C |
probably damaging |
Het |
Hao2 |
C |
T |
3: 98,784,493 (GRCm39) |
A291T |
probably damaging |
Het |
Igkv1-133 |
A |
G |
6: 67,702,563 (GRCm39) |
T94A |
possibly damaging |
Het |
Irf2bp1 |
G |
A |
7: 18,738,923 (GRCm39) |
A188T |
possibly damaging |
Het |
Itpr1 |
T |
C |
6: 108,383,106 (GRCm39) |
V1478A |
possibly damaging |
Het |
Kdm5b |
T |
C |
1: 134,549,837 (GRCm39) |
|
probably null |
Het |
Kif5b |
A |
T |
18: 6,234,882 (GRCm39) |
D49E |
probably damaging |
Het |
Lmbr1l |
A |
G |
15: 98,810,123 (GRCm39) |
W113R |
probably damaging |
Het |
Lrp2 |
T |
C |
2: 69,343,698 (GRCm39) |
D887G |
probably damaging |
Het |
Lrrc14 |
T |
A |
15: 76,598,143 (GRCm39) |
M291K |
probably benign |
Het |
Lypd11 |
T |
C |
7: 24,422,836 (GRCm39) |
E79G |
probably benign |
Het |
Mgarp |
G |
A |
3: 51,296,387 (GRCm39) |
A205V |
possibly damaging |
Het |
Msl2 |
T |
C |
9: 100,978,606 (GRCm39) |
|
probably null |
Het |
Nfix |
G |
A |
8: 85,440,406 (GRCm39) |
Q487* |
probably null |
Het |
Notch4 |
T |
C |
17: 34,784,263 (GRCm39) |
V22A |
probably benign |
Het |
Npc1l1 |
T |
A |
11: 6,172,221 (GRCm39) |
Q823L |
probably benign |
Het |
Obox3 |
T |
C |
7: 15,360,774 (GRCm39) |
K122E |
probably benign |
Het |
Or10ab5 |
C |
T |
7: 108,245,755 (GRCm39) |
M9I |
probably benign |
Het |
Or2a12 |
A |
G |
6: 42,904,972 (GRCm39) |
K269R |
probably damaging |
Het |
Or8s10 |
T |
C |
15: 98,336,213 (GRCm39) |
Y288H |
probably damaging |
Het |
Plekhh3 |
T |
A |
11: 101,057,397 (GRCm39) |
M287L |
possibly damaging |
Het |
Prpf3 |
A |
T |
3: 95,760,857 (GRCm39) |
I15K |
probably benign |
Het |
Rpl12-ps1 |
G |
T |
1: 36,997,423 (GRCm39) |
|
noncoding transcript |
Het |
Rps8 |
G |
C |
4: 117,012,352 (GRCm39) |
|
probably benign |
Het |
Setd2 |
T |
C |
9: 110,446,899 (GRCm39) |
V2489A |
probably damaging |
Het |
Slfn10-ps |
T |
A |
11: 82,919,851 (GRCm39) |
|
noncoding transcript |
Het |
Smad2 |
C |
T |
18: 76,395,795 (GRCm39) |
P78L |
probably damaging |
Het |
Spen |
G |
A |
4: 141,201,127 (GRCm39) |
T2500I |
probably damaging |
Het |
Stmnd1 |
A |
G |
13: 46,453,074 (GRCm39) |
D250G |
probably benign |
Het |
Tjp2 |
T |
G |
19: 24,108,568 (GRCm39) |
E181D |
probably benign |
Het |
Tmem131l |
T |
C |
3: 83,806,572 (GRCm39) |
D1478G |
probably benign |
Het |
Trim72 |
G |
T |
7: 127,609,176 (GRCm39) |
R326L |
probably benign |
Het |
Ttn |
A |
T |
2: 76,727,584 (GRCm39) |
|
probably benign |
Het |
Vmn1r177 |
A |
T |
7: 23,565,498 (GRCm39) |
M126K |
probably damaging |
Het |
Vmn1r57 |
A |
G |
7: 5,224,319 (GRCm39) |
I281M |
probably damaging |
Het |
Wdr25 |
T |
C |
12: 108,863,968 (GRCm39) |
S38P |
probably benign |
Het |
Zfp937 |
T |
A |
2: 150,080,229 (GRCm39) |
Y86* |
probably null |
Het |
Zfr2 |
CTCAGACTGGTGTCAGAC |
CTCAGAC |
10: 81,082,544 (GRCm39) |
|
probably null |
Het |
Zswim1 |
C |
T |
2: 164,667,845 (GRCm39) |
H366Y |
probably damaging |
Het |
|
Other mutations in Vmn2r108 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00903:Vmn2r108
|
APN |
17 |
20,682,774 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL01143:Vmn2r108
|
APN |
17 |
20,682,727 (GRCm39) |
missense |
possibly damaging |
0.82 |
IGL01311:Vmn2r108
|
APN |
17 |
20,682,939 (GRCm39) |
nonsense |
probably null |
|
IGL01411:Vmn2r108
|
APN |
17 |
20,691,282 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01414:Vmn2r108
|
APN |
17 |
20,691,942 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01536:Vmn2r108
|
APN |
17 |
20,683,543 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01748:Vmn2r108
|
APN |
17 |
20,683,476 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01769:Vmn2r108
|
APN |
17 |
20,691,280 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02022:Vmn2r108
|
APN |
17 |
20,691,987 (GRCm39) |
missense |
possibly damaging |
0.77 |
IGL02041:Vmn2r108
|
APN |
17 |
20,683,398 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02049:Vmn2r108
|
APN |
17 |
20,691,608 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02344:Vmn2r108
|
APN |
17 |
20,689,405 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02939:Vmn2r108
|
APN |
17 |
20,691,545 (GRCm39) |
missense |
probably benign |
0.05 |
IGL03202:Vmn2r108
|
APN |
17 |
20,691,319 (GRCm39) |
nonsense |
probably null |
|
PIT4498001:Vmn2r108
|
UTSW |
17 |
20,683,279 (GRCm39) |
missense |
probably damaging |
1.00 |
R0112:Vmn2r108
|
UTSW |
17 |
20,691,897 (GRCm39) |
missense |
probably benign |
0.07 |
R0505:Vmn2r108
|
UTSW |
17 |
20,683,096 (GRCm39) |
missense |
possibly damaging |
0.77 |
R0833:Vmn2r108
|
UTSW |
17 |
20,691,721 (GRCm39) |
missense |
probably benign |
|
R0836:Vmn2r108
|
UTSW |
17 |
20,691,721 (GRCm39) |
missense |
probably benign |
|
R0943:Vmn2r108
|
UTSW |
17 |
20,691,397 (GRCm39) |
nonsense |
probably null |
|
R1411:Vmn2r108
|
UTSW |
17 |
20,683,107 (GRCm39) |
missense |
probably damaging |
0.98 |
R1442:Vmn2r108
|
UTSW |
17 |
20,692,623 (GRCm39) |
nonsense |
probably null |
|
R1587:Vmn2r108
|
UTSW |
17 |
20,692,383 (GRCm39) |
missense |
probably damaging |
1.00 |
R1751:Vmn2r108
|
UTSW |
17 |
20,682,786 (GRCm39) |
missense |
probably damaging |
1.00 |
R1773:Vmn2r108
|
UTSW |
17 |
20,689,335 (GRCm39) |
missense |
probably damaging |
1.00 |
R2021:Vmn2r108
|
UTSW |
17 |
20,691,252 (GRCm39) |
missense |
probably benign |
0.00 |
R2159:Vmn2r108
|
UTSW |
17 |
20,689,363 (GRCm39) |
missense |
probably benign |
0.41 |
R2224:Vmn2r108
|
UTSW |
17 |
20,701,295 (GRCm39) |
nonsense |
probably null |
|
R2226:Vmn2r108
|
UTSW |
17 |
20,701,295 (GRCm39) |
nonsense |
probably null |
|
R2517:Vmn2r108
|
UTSW |
17 |
20,692,577 (GRCm39) |
missense |
probably damaging |
1.00 |
R3710:Vmn2r108
|
UTSW |
17 |
20,682,932 (GRCm39) |
missense |
probably benign |
|
R4470:Vmn2r108
|
UTSW |
17 |
20,682,990 (GRCm39) |
missense |
probably damaging |
1.00 |
R4686:Vmn2r108
|
UTSW |
17 |
20,691,636 (GRCm39) |
missense |
probably damaging |
0.99 |
R4729:Vmn2r108
|
UTSW |
17 |
20,692,632 (GRCm39) |
missense |
probably damaging |
0.99 |
R4799:Vmn2r108
|
UTSW |
17 |
20,682,891 (GRCm39) |
missense |
probably damaging |
1.00 |
R4993:Vmn2r108
|
UTSW |
17 |
20,701,449 (GRCm39) |
missense |
probably benign |
0.04 |
R5088:Vmn2r108
|
UTSW |
17 |
20,690,454 (GRCm39) |
missense |
possibly damaging |
0.46 |
R5213:Vmn2r108
|
UTSW |
17 |
20,691,755 (GRCm39) |
missense |
probably benign |
0.00 |
R5289:Vmn2r108
|
UTSW |
17 |
20,691,866 (GRCm39) |
missense |
probably damaging |
1.00 |
R5713:Vmn2r108
|
UTSW |
17 |
20,691,290 (GRCm39) |
missense |
probably damaging |
1.00 |
R5753:Vmn2r108
|
UTSW |
17 |
20,683,179 (GRCm39) |
missense |
probably damaging |
0.99 |
R5792:Vmn2r108
|
UTSW |
17 |
20,683,398 (GRCm39) |
missense |
probably damaging |
0.99 |
R5798:Vmn2r108
|
UTSW |
17 |
20,692,545 (GRCm39) |
missense |
probably benign |
0.39 |
R5897:Vmn2r108
|
UTSW |
17 |
20,691,580 (GRCm39) |
missense |
probably benign |
0.01 |
R6018:Vmn2r108
|
UTSW |
17 |
20,683,268 (GRCm39) |
missense |
possibly damaging |
0.83 |
R6093:Vmn2r108
|
UTSW |
17 |
20,701,402 (GRCm39) |
missense |
probably benign |
0.00 |
R6156:Vmn2r108
|
UTSW |
17 |
20,692,447 (GRCm39) |
missense |
probably benign |
0.03 |
R6199:Vmn2r108
|
UTSW |
17 |
20,682,644 (GRCm39) |
missense |
probably benign |
0.01 |
R6259:Vmn2r108
|
UTSW |
17 |
20,683,371 (GRCm39) |
missense |
possibly damaging |
0.95 |
R6309:Vmn2r108
|
UTSW |
17 |
20,691,660 (GRCm39) |
missense |
probably damaging |
0.98 |
R6324:Vmn2r108
|
UTSW |
17 |
20,691,977 (GRCm39) |
nonsense |
probably null |
|
R6364:Vmn2r108
|
UTSW |
17 |
20,691,260 (GRCm39) |
missense |
probably benign |
0.00 |
R6446:Vmn2r108
|
UTSW |
17 |
20,692,609 (GRCm39) |
nonsense |
probably null |
|
R6541:Vmn2r108
|
UTSW |
17 |
20,701,480 (GRCm39) |
missense |
probably benign |
0.02 |
R7025:Vmn2r108
|
UTSW |
17 |
20,691,345 (GRCm39) |
missense |
possibly damaging |
0.67 |
R7063:Vmn2r108
|
UTSW |
17 |
20,701,410 (GRCm39) |
missense |
probably damaging |
1.00 |
R7092:Vmn2r108
|
UTSW |
17 |
20,701,338 (GRCm39) |
missense |
probably benign |
0.10 |
R7096:Vmn2r108
|
UTSW |
17 |
20,682,762 (GRCm39) |
missense |
probably damaging |
1.00 |
R7203:Vmn2r108
|
UTSW |
17 |
20,683,038 (GRCm39) |
missense |
probably benign |
0.12 |
R7458:Vmn2r108
|
UTSW |
17 |
20,692,532 (GRCm39) |
missense |
probably benign |
0.17 |
R7619:Vmn2r108
|
UTSW |
17 |
20,692,457 (GRCm39) |
missense |
probably benign |
0.02 |
R7841:Vmn2r108
|
UTSW |
17 |
20,690,305 (GRCm39) |
critical splice donor site |
probably null |
|
R7944:Vmn2r108
|
UTSW |
17 |
20,691,890 (GRCm39) |
missense |
probably damaging |
0.99 |
R8048:Vmn2r108
|
UTSW |
17 |
20,691,762 (GRCm39) |
missense |
probably benign |
0.29 |
R8213:Vmn2r108
|
UTSW |
17 |
20,690,350 (GRCm39) |
missense |
probably benign |
0.03 |
R8218:Vmn2r108
|
UTSW |
17 |
20,683,465 (GRCm39) |
missense |
probably damaging |
1.00 |
R8507:Vmn2r108
|
UTSW |
17 |
20,683,195 (GRCm39) |
nonsense |
probably null |
|
R8708:Vmn2r108
|
UTSW |
17 |
20,682,687 (GRCm39) |
missense |
probably damaging |
0.98 |
R8845:Vmn2r108
|
UTSW |
17 |
20,691,361 (GRCm39) |
missense |
probably benign |
0.03 |
R9030:Vmn2r108
|
UTSW |
17 |
20,690,312 (GRCm39) |
missense |
probably benign |
0.01 |
R9226:Vmn2r108
|
UTSW |
17 |
20,691,330 (GRCm39) |
missense |
probably benign |
|
R9278:Vmn2r108
|
UTSW |
17 |
20,692,561 (GRCm39) |
missense |
probably benign |
0.11 |
X0022:Vmn2r108
|
UTSW |
17 |
20,691,371 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Vmn2r108
|
UTSW |
17 |
20,691,375 (GRCm39) |
missense |
probably benign |
0.01 |
Z1177:Vmn2r108
|
UTSW |
17 |
20,691,219 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Predicted Primers |
PCR Primer
(F):5'- GACAGTTAGCCAAAAGTCGAC -3'
(R):5'- GGTTGGTCTCATCCTTCCAG -3'
Sequencing Primer
(F):5'- GCCATAACTTAGGAAGGTAAATGTC -3'
(R):5'- GGTTGGTCTCATCCTTCCAGATAAC -3'
|
Posted On |
2016-08-04 |