Incidental Mutation 'R5388:Rad21l'
ID 425391
Institutional Source Beutler Lab
Gene Symbol Rad21l
Ensembl Gene ENSMUSG00000074704
Gene Name RAD21-like (S. pombe)
Synonyms Gm14160
MMRRC Submission 042960-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5388 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 151487324-151510453 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 151495403 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Isoleucine at position 427 (V427I)
Ref Sequence ENSEMBL: ENSMUSP00000136918 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000096439] [ENSMUST00000180195]
AlphaFold A2AU37
Predicted Effect probably benign
Transcript: ENSMUST00000096439
AA Change: V424I

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000094174
Gene: ENSMUSG00000074704
AA Change: V424I

DomainStartEndE-ValueType
Pfam:Rad21_Rec8_N 1 111 3.9e-43 PFAM
low complexity region 198 213 N/A INTRINSIC
low complexity region 275 299 N/A INTRINSIC
Pfam:Rad21_Rec8 493 546 1.1e-19 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000180195
AA Change: V427I

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000136918
Gene: ENSMUSG00000074704
AA Change: V427I

DomainStartEndE-ValueType
Pfam:Rad21_Rec8_N 1 106 5.7e-40 PFAM
low complexity region 198 213 N/A INTRINSIC
low complexity region 278 302 N/A INTRINSIC
Pfam:Rad21_Rec8 496 549 1.3e-19 PFAM
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.8%
  • 10x: 97.5%
  • 20x: 95.9%
Validation Efficiency 98% (57/58)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility and reduced female fertility associated with abnormal meiosis and synaptonemal complex. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca16 T C 7: 120,139,969 (GRCm39) probably null Het
Acap2 C A 16: 30,928,543 (GRCm39) C475F probably damaging Het
Ace C A 11: 105,879,284 (GRCm39) P603Q possibly damaging Het
Adamts20 C G 15: 94,243,659 (GRCm39) V657L possibly damaging Het
Antxr2 A G 5: 98,125,458 (GRCm39) probably null Het
Atp6v1b2 G A 8: 69,554,089 (GRCm39) V89I probably benign Het
Cacna1e G A 1: 154,353,542 (GRCm39) P676L probably damaging Het
Camsap3 A T 8: 3,654,276 (GRCm39) I649F probably damaging Het
Camta1 G T 4: 151,159,695 (GRCm39) S490R probably damaging Het
Celsr1 A G 15: 85,809,719 (GRCm39) I2221T probably damaging Het
Cfd A T 10: 79,727,959 (GRCm39) D164V probably damaging Het
Cfdp1 T C 8: 112,495,384 (GRCm39) D278G probably damaging Het
Cntn6 A T 6: 104,809,523 (GRCm39) L519F probably damaging Het
Col4a4 C T 1: 82,471,312 (GRCm39) G681E unknown Het
Cybrd1 T C 2: 70,967,989 (GRCm39) probably null Het
Cyp2e1 T C 7: 140,343,906 (GRCm39) L48P probably damaging Het
Eddm13 T C 7: 6,269,346 (GRCm39) probably null Het
Ep400 G A 5: 110,849,594 (GRCm39) T1409I unknown Het
Exosc7 A T 9: 122,947,972 (GRCm39) D47V probably damaging Het
Fgr T C 4: 132,722,342 (GRCm39) F204L probably damaging Het
Gm10100 G A 10: 77,562,560 (GRCm39) V81M probably benign Het
Gm12367 T C 4: 35,235,690 (GRCm39) noncoding transcript Het
Grxcr1 C A 5: 68,323,538 (GRCm39) T272K probably damaging Het
Kcna5 C T 6: 126,511,859 (GRCm39) D90N probably benign Het
Kdm5b T A 1: 134,536,635 (GRCm39) Y618* probably null Het
Lama5 T A 2: 179,832,539 (GRCm39) H1670L possibly damaging Het
Mtus2 C T 5: 148,243,518 (GRCm39) Q113* probably null Het
Ncam1 A C 9: 49,456,054 (GRCm39) D521E probably benign Het
Nkapl T C 13: 21,651,740 (GRCm39) H291R possibly damaging Het
Nlrp1b T G 11: 71,062,967 (GRCm39) N695H probably damaging Het
Npc1l1 T A 11: 6,164,733 (GRCm39) Q1105H probably damaging Het
Paxip1 C G 5: 27,986,453 (GRCm39) probably benign Het
Pign A T 1: 105,583,695 (GRCm39) W136R probably damaging Het
Pira1 T C 7: 3,741,856 (GRCm39) T175A possibly damaging Het
Pkn3 T A 2: 29,971,086 (GRCm39) S222T probably damaging Het
Polr3a T C 14: 24,505,009 (GRCm39) I1084V possibly damaging Het
Ppfibp1 T A 6: 146,898,338 (GRCm39) I98N probably damaging Het
Ppfibp1 T G 6: 146,917,828 (GRCm39) S484A probably damaging Het
Ppp1r7 T C 1: 93,280,312 (GRCm39) F127L probably damaging Het
Pramel1 T C 4: 143,123,954 (GRCm39) Y210H probably benign Het
Ripply1 TTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT TTCCTCCTCCTCCTCCTCCTCCTCCTCCT X: 138,680,599 (GRCm39) probably benign Het
Rnf225 A G 7: 12,661,932 (GRCm39) D37G probably damaging Het
Smpd2 A G 10: 41,363,967 (GRCm39) probably null Het
Spata31h1 T C 10: 82,119,561 (GRCm39) Q4483R probably damaging Het
Tmem38b C T 4: 53,859,945 (GRCm39) R242W probably benign Het
Topaz1 A T 9: 122,603,158 (GRCm39) K1035I possibly damaging Het
Trhr T C 15: 44,060,873 (GRCm39) I131T possibly damaging Het
Usp1 A G 4: 98,819,294 (GRCm39) D252G probably benign Het
Usp14 C T 18: 10,018,023 (GRCm39) E90K probably damaging Het
Yme1l1 T G 2: 23,052,569 (GRCm39) D74E probably benign Het
Ythdc2 T A 18: 44,990,092 (GRCm39) L732Q possibly damaging Het
Zbbx G T 3: 74,990,977 (GRCm39) A289D probably damaging Het
Zfhx3 G A 8: 109,673,446 (GRCm39) V1499I possibly damaging Het
Zfp622 T C 15: 25,996,285 (GRCm39) V184A possibly damaging Het
Other mutations in Rad21l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00435:Rad21l APN 2 151,495,436 (GRCm39) missense probably benign 0.04
IGL00815:Rad21l APN 2 151,509,909 (GRCm39) missense probably damaging 1.00
IGL00847:Rad21l APN 2 151,502,635 (GRCm39) missense probably benign 0.00
IGL01545:Rad21l APN 2 151,497,084 (GRCm39) missense probably benign 0.00
IGL02983:Rad21l APN 2 151,497,040 (GRCm39) missense probably damaging 1.00
IGL03001:Rad21l APN 2 151,510,389 (GRCm39) missense probably damaging 1.00
3-1:Rad21l UTSW 2 151,496,567 (GRCm39) missense possibly damaging 0.52
R0219:Rad21l UTSW 2 151,496,508 (GRCm39) splice site probably benign
R0382:Rad21l UTSW 2 151,487,363 (GRCm39) missense probably damaging 1.00
R0413:Rad21l UTSW 2 151,493,851 (GRCm39) missense probably benign
R0511:Rad21l UTSW 2 151,490,989 (GRCm39) splice site probably benign
R1555:Rad21l UTSW 2 151,500,348 (GRCm39) missense probably benign 0.03
R1606:Rad21l UTSW 2 151,496,606 (GRCm39) missense probably damaging 1.00
R1696:Rad21l UTSW 2 151,510,447 (GRCm39) missense probably damaging 1.00
R1951:Rad21l UTSW 2 151,497,179 (GRCm39) missense probably benign 0.04
R1999:Rad21l UTSW 2 151,496,621 (GRCm39) critical splice acceptor site probably null
R2060:Rad21l UTSW 2 151,487,349 (GRCm39) missense probably benign 0.21
R2068:Rad21l UTSW 2 151,509,927 (GRCm39) missense probably damaging 1.00
R3037:Rad21l UTSW 2 151,502,700 (GRCm39) missense probably damaging 1.00
R4805:Rad21l UTSW 2 151,509,927 (GRCm39) missense probably damaging 1.00
R5185:Rad21l UTSW 2 151,499,382 (GRCm39) missense probably benign 0.01
R5504:Rad21l UTSW 2 151,510,357 (GRCm39) missense probably damaging 1.00
R5530:Rad21l UTSW 2 151,499,430 (GRCm39) missense probably benign 0.00
R6113:Rad21l UTSW 2 151,499,398 (GRCm39) missense probably damaging 0.98
R6233:Rad21l UTSW 2 151,495,462 (GRCm39) missense probably benign
R7096:Rad21l UTSW 2 151,509,840 (GRCm39) missense probably benign 0.31
R7337:Rad21l UTSW 2 151,500,365 (GRCm39) missense probably damaging 1.00
R7822:Rad21l UTSW 2 151,497,045 (GRCm39) missense probably benign
R8315:Rad21l UTSW 2 151,497,160 (GRCm39) missense probably benign 0.00
R8368:Rad21l UTSW 2 151,495,390 (GRCm39) missense probably benign
R8673:Rad21l UTSW 2 151,502,718 (GRCm39) missense possibly damaging 0.77
R8698:Rad21l UTSW 2 151,487,373 (GRCm39) missense probably damaging 1.00
R8769:Rad21l UTSW 2 151,509,838 (GRCm39) missense probably benign 0.05
R9308:Rad21l UTSW 2 151,491,049 (GRCm39) missense probably benign 0.07
Z1088:Rad21l UTSW 2 151,509,939 (GRCm39) missense probably damaging 1.00
Z1176:Rad21l UTSW 2 151,497,152 (GRCm39) missense probably damaging 0.99
Predicted Primers
Posted On 2016-08-04