Mutagenetix > Incidental Mutation

Incidental Mutation 'R5428:Gtse1'

427038

Institutional Source

Beutler Lab

Gene Symbol

Gtse1

Ensembl Gene

ENSMUSG00000022385

Gene Name

G two S phase expressed protein 1

Synonyms

B99, Gtse-1

MMRRC Submission

042994-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.083) question?

Stock #

R5428 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

85743946-85760774 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 85746340 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Alanine at position 52 (D52A)

Ref Sequence

ENSEMBL: ENSMUSP00000155552 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000146088] [ENSMUST00000170629] [ENSMUST00000231074]

AlphaFold

Q8R080

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133158

Predicted Effect

probably benign
Transcript: ENSMUST00000146088

SMART Domains

Protein: ENSMUSP00000114504
Gene: ENSMUSG00000035944

Domain	Start	End	E-Value	Type
SCOP:d1ld8a_	105	272	1e-7	SMART
low complexity region	342	354	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000170629
AA Change: D52A

PolyPhen 2 Score 0.120 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000128759
Gene: ENSMUSG00000022385
AA Change: D52A

Domain	Start	End	E-Value	Type
Pfam:GTSE1_N	10	153	3e-62	PFAM
low complexity region	284	301	N/A	INTRINSIC
low complexity region	310	321	N/A	INTRINSIC
low complexity region	360	372	N/A	INTRINSIC
low complexity region	478	497	N/A	INTRINSIC
low complexity region	568	593	N/A	INTRINSIC
low complexity region	644	653	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000231074
AA Change: D52A

PolyPhen 2 Score 0.120 (Sensitivity: 0.93; Specificity: 0.86)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.8%

Validation Efficiency

98% (62/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is only expressed in the S and G2 phases of the cell cycle, where it colocalizes with cytoplasmic tubulin and microtubules. In response to DNA damage, the encoded protein accumulates in the nucleus and binds the tumor suppressor protein p53, shuttling it out of the nucleus and repressing its ability to induce apoptosis. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921524L21Rik	G	C	18: 6,635,918 (GRCm39)	V324L	probably benign	Het
Abl2	T	C	1: 156,469,681 (GRCm39)	C982R	probably damaging	Het
Adgrl4	G	A	3: 151,248,323 (GRCm39)	C665Y	probably damaging	Het
Adra1d	A	G	2: 131,403,323 (GRCm39)	S256P	probably damaging	Het
Aipl1	T	A	11: 71,921,313 (GRCm39)	Y194F	probably benign	Het
Arfgef1	C	A	1: 10,231,060 (GRCm39)	D1150Y	probably damaging	Het
Arl14epl	A	T	18: 47,059,387 (GRCm39)	M1L	possibly damaging	Het
Colgalt1	G	T	8: 72,075,420 (GRCm39)	R442L	probably damaging	Het
Ctnnd1	C	T	2: 84,447,133 (GRCm39)	V371M	probably damaging	Het
Dach1	A	G	14: 98,406,705 (GRCm39)	V14A	unknown	Het
Defa30	A	G	8: 21,625,419 (GRCm39)	D61G	probably benign	Het
Dnaja2	A	T	8: 86,266,804 (GRCm39)	C308S	probably benign	Het
Emc4	A	G	2: 112,197,700 (GRCm39)		probably benign	Het
Foxp1	A	G	6: 98,993,592 (GRCm39)	V104A	probably damaging	Het
Fry	T	G	5: 150,328,824 (GRCm39)	L1319R	possibly damaging	Het
Gad1-ps	G	A	10: 99,281,009 (GRCm39)		noncoding transcript	Het
Gja10	T	A	4: 32,601,169 (GRCm39)	H405L	probably benign	Het
Gm27047	A	G	6: 130,607,527 (GRCm39)		noncoding transcript	Het
Grm1	T	A	10: 10,595,307 (GRCm39)	T774S	probably damaging	Het
Kctd17	T	A	15: 78,312,982 (GRCm39)	F42Y	probably damaging	Het
Kndc1	A	G	7: 139,488,878 (GRCm39)	K178E	probably damaging	Het
Lrrc74b	T	C	16: 17,376,125 (GRCm39)	E175G	probably damaging	Het
Macf1	A	G	4: 123,278,661 (GRCm39)	I5927T	probably damaging	Het
Maml2	A	G	9: 13,617,191 (GRCm39)	N935S	probably benign	Het
Man2a1	A	G	17: 65,019,295 (GRCm39)	I720V	probably benign	Het
Map3k5	C	T	10: 19,899,399 (GRCm39)	H219Y	possibly damaging	Het
Map4k5	T	C	12: 69,884,787 (GRCm39)	T314A	possibly damaging	Het
Mast3	A	G	8: 71,237,377 (GRCm39)	V615A	possibly damaging	Het
Mcmbp	C	T	7: 128,306,248 (GRCm39)	V457I	probably benign	Het
Myt1l	G	A	12: 29,882,331 (GRCm39)	G509R	unknown	Het
Nacc1	T	C	8: 85,402,783 (GRCm39)	I337V	probably damaging	Het
Nipbl	T	C	15: 8,359,780 (GRCm39)	D1475G	probably benign	Het
Orc1	T	A	4: 108,457,137 (GRCm39)	D392E	probably benign	Het
Pappa2	T	C	1: 158,642,355 (GRCm39)	T1297A	possibly damaging	Het
Plag1	C	T	4: 3,905,538 (GRCm39)	V51I	possibly damaging	Het
Ppp1r12a	G	A	10: 108,089,208 (GRCm39)	E616K	possibly damaging	Het
Ptgs1	A	G	2: 36,135,280 (GRCm39)	M415V	probably benign	Het
Ralgapa2	C	T	2: 146,176,414 (GRCm39)	E1683K	probably damaging	Het
Rap2a	T	A	14: 120,716,406 (GRCm39)	F90I	probably benign	Het
Rcvrn	A	G	11: 67,590,875 (GRCm39)	E153G	possibly damaging	Het
Sharpin	C	A	15: 76,234,866 (GRCm39)		probably benign	Het
Skil	T	A	3: 31,151,647 (GRCm39)	D56E	probably benign	Het
Slc22a18	G	T	7: 143,033,082 (GRCm39)	G57W	probably damaging	Het
Sntb1	C	G	15: 55,506,191 (GRCm39)	G461R	probably damaging	Het
Synj1	T	C	16: 90,788,406 (GRCm39)	D154G	probably damaging	Het
Tbc1d24	A	T	17: 24,400,746 (GRCm39)	N156K	probably benign	Het
Tcea1	A	T	1: 4,950,568 (GRCm39)		probably benign	Het
Tmc3	T	C	7: 83,261,755 (GRCm39)	V611A	probably damaging	Het
Tnrc6c	A	G	11: 117,591,588 (GRCm39)	M1V	probably null	Het
Tomm5	A	T	4: 45,106,689 (GRCm39)		probably benign	Het
Ttc6	A	G	12: 57,736,620 (GRCm39)	K1207R	probably null	Het
Ttn	T	C	2: 76,591,448 (GRCm39)	T12747A	possibly damaging	Het
Ttn	A	T	2: 76,715,480 (GRCm39)		probably benign	Het
Utrn	T	C	10: 12,569,175 (GRCm39)	D1147G	probably benign	Het
Vmn1r53	T	C	6: 90,200,395 (GRCm39)	I310V	probably benign	Het
Washc4	A	C	10: 83,410,386 (GRCm39)	D658A	probably benign	Het
Wrap73	G	A	4: 154,229,731 (GRCm39)	R34Q	probably damaging	Het
Ylpm1	T	C	12: 85,077,003 (GRCm39)	F1243L	probably benign	Het
Zbtb24	T	C	10: 41,340,784 (GRCm39)	S605P	probably benign	Het
Zfy1	T	G	Y: 726,205 (GRCm39)	H520P	possibly damaging	Het

Other mutations in Gtse1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00990:Gtse1	APN	15	85,753,018 (GRCm39)	missense	possibly damaging	0.54
IGL01344:Gtse1	APN	15	85,746,267 (GRCm39)	critical splice acceptor site	probably null
IGL01541:Gtse1	APN	15	85,759,855 (GRCm39)	nonsense	probably null
IGL01621:Gtse1	APN	15	85,759,283 (GRCm39)	missense	probably benign	0.01
IGL01945:Gtse1	APN	15	85,755,748 (GRCm39)	missense	probably benign	0.00
IGL02193:Gtse1	APN	15	85,746,531 (GRCm39)	missense	probably benign	0.27
IGL02215:Gtse1	APN	15	85,746,799 (GRCm39)	missense	possibly damaging	0.92
IGL02494:Gtse1	APN	15	85,751,704 (GRCm39)	missense	probably damaging	1.00
IGL02879:Gtse1	APN	15	85,753,264 (GRCm39)	splice site	probably benign
R0009:Gtse1	UTSW	15	85,746,636 (GRCm39)	missense	probably benign	0.06
R0047:Gtse1	UTSW	15	85,746,579 (GRCm39)	missense	probably damaging	1.00
R0047:Gtse1	UTSW	15	85,746,579 (GRCm39)	missense	probably damaging	1.00
R0576:Gtse1	UTSW	15	85,753,252 (GRCm39)	missense	probably damaging	1.00
R1078:Gtse1	UTSW	15	85,746,508 (GRCm39)	missense	probably damaging	0.98
R1442:Gtse1	UTSW	15	85,744,303 (GRCm39)	splice site	probably benign
R1623:Gtse1	UTSW	15	85,751,779 (GRCm39)	missense	probably benign
R1925:Gtse1	UTSW	15	85,757,939 (GRCm39)	missense	probably benign	0.00
R1928:Gtse1	UTSW	15	85,746,264 (GRCm39)	splice site	probably benign
R4565:Gtse1	UTSW	15	85,759,385 (GRCm39)	missense	probably damaging	0.99
R5170:Gtse1	UTSW	15	85,748,465 (GRCm39)	critical splice donor site	probably null
R5310:Gtse1	UTSW	15	85,757,993 (GRCm39)	missense	probably benign	0.04
R5748:Gtse1	UTSW	15	85,751,778 (GRCm39)	missense	probably benign
R5996:Gtse1	UTSW	15	85,748,381 (GRCm39)	missense	probably benign	0.00
R6179:Gtse1	UTSW	15	85,753,158 (GRCm39)	missense	possibly damaging	0.95
R6379:Gtse1	UTSW	15	85,748,425 (GRCm39)	missense	probably benign	0.01
R6381:Gtse1	UTSW	15	85,746,349 (GRCm39)	missense	probably benign	0.00
R6434:Gtse1	UTSW	15	85,759,370 (GRCm39)	missense	probably benign	0.21
R7086:Gtse1	UTSW	15	85,759,750 (GRCm39)	missense	probably damaging	1.00
R7304:Gtse1	UTSW	15	85,755,748 (GRCm39)	missense	probably benign	0.00
R7485:Gtse1	UTSW	15	85,752,901 (GRCm39)	missense	probably benign	0.04
R7580:Gtse1	UTSW	15	85,746,432 (GRCm39)	missense	probably damaging	1.00
R7856:Gtse1	UTSW	15	85,748,342 (GRCm39)	missense	probably benign	0.09
R8496:Gtse1	UTSW	15	85,746,283 (GRCm39)	missense	probably damaging	1.00
R8674:Gtse1	UTSW	15	85,746,376 (GRCm39)	missense	probably damaging	1.00
R8987:Gtse1	UTSW	15	85,753,109 (GRCm39)	missense	probably benign	0.00
R9491:Gtse1	UTSW	15	85,755,734 (GRCm39)	missense	probably damaging	1.00
R9642:Gtse1	UTSW	15	85,751,697 (GRCm39)	missense	probably damaging	0.98
Z1176:Gtse1	UTSW	15	85,752,947 (GRCm39)	missense	possibly damaging	0.85
Z1177:Gtse1	UTSW	15	85,759,938 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- CAAGGTAAACATGCGTTTTCTTCC -3'
(R):5'- TGTGAGTCCTGCACAAACG -3'

Sequencing Primer
(F):5'- CCTAACCCCTGGTATAGACAGGTTC -3'
(R):5'- GTGAGTCCTGCACAAACGTTTCC -3'

Posted On

2016-09-01